Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

41580633 .. 41583079

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G502800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGGGTAGAGAGAGTCGAGGTCATTGCCCCAAAACCCGAGGGCACTATCCCAGACGAGTTCATTAGGTCAGAGAATGAGCAACCTGGGATCACGACCGTTCATGGGAAGGTCCTTGAGGTCCCAACCATTGATTTTAGTGACCCTGATGAGCAAAAGCTCATCCGTCAGATTGCTGAGGCCAGCAGCAACTGGGGCATGTACCAGATTGTGAACCATGACATCCCTAGTGAGGCCATAAGAAACTTGCAGGCTGTTGGGAATGAGTTTTTTGAGCTTCCACAGGAGGAAAAGGAGGCTTATGCTAAGCCTCTCGACTCTGACTCTATGGAAGGCTATGGGACAAAGCTTTTCAAGGAGTTTTCTGACGGCAACGTTACGAAAAAAGGTTGGGTGGACCATATGTTTAATAAGATCTGGCCTCCTTCTGTCATTAATTACCAGTTCTGGCCTAAGAACCCGCCTTCTTACAGGGAAGCTAATGAGGAGTATGCTAAGCATATGCACAAAGTGGTGGAGAAGCTGTTCAGGCTCCTATCGCTAGGGTTGGGGCTCGAAGGACAAGAGTTAAAGAAGGCTTCTGGTGGAGATGACTTGATTTACCTTCTCAAAATTAATTATTACCCGCCATGTCCCCGCCCGGATCTTGCTCTCGGCGTGGTGGCTCACACCGACATGTCCATCGTCACCATTCTCGTCCCCAACGATGTCCAGGGCCTCCAGGCCTCCAGAGATGGCCGCTGGTACGACGTTAGGTACATCCCTAATGCCCTTGTCATCCACATTGGTGATCAAATGGAGGTAATGAGCAATGGAAAGTACAAGAGTGTGCTGCACAGAACCACAGTGAACAAAGACAAGACAAGAATCTCATGGCCAGTGTTCTTGGAGCCTCCAGCAGACCACGTAATAGGGCCTCTCCCACAGCTTGTGAACCAGGAAAATCCACCTAAATACAAGACCAAGACGTACGGGGAGTATGTTTATTGTAAGCTCAACAAAATTCCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

38.38

Weight (kDa)

5.67

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	461, 626, 637, 739
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	2 cut(s)	98, 651
AcoI	YGGCCR	2 cut(s)	736, 875
AcsI	RAATTY	1 cut(s)	1002
AdeI	CACNNNGTG	1 cut(s)	511
AfaI	GTAC	5 cut(s)	203, 746, 758, 821, 971
AfiI	CCNNNNNNNGG	2 cut(s)	105, 232
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	4 cut(s)	85, 711, 720, 936
AleI	CACNNNNGTG	1 cut(s)	786
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AluBI	AGCT	7 cut(s)	160, 277, 349, 479, 523, 928, 994
AluI	AGCT	7 cut(s)	160, 277, 349, 479, 523, 928, 994
AlwI	GGATC	2 cut(s)	98, 651
AlwNI	CAGNNNCTG	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	9 cut(s)	180, 234, 419, 449, 715, 723, 736, 875, 914
ApeKI	GCWGC	2 cut(s)	186, 832
ApoI	RAATTY	1 cut(s)	1002
AseI	ATTAAT	2 cut(s)	435, 615
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	5 cut(s)	112, 121, 397, 715, 914
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	2 cut(s)	679, 800
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	3 cut(s)	112, 121, 397
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	198, 819
BccI	CCATC	2 cut(s)	689, 728
BceAI	ACGGC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	4 cut(s)	87, 713, 722, 938
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	641
BfaI	CTAG	2 cut(s)	228, 542
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	3 cut(s)	187, 739, 833
BlpI	GCTNAGC	2 cut(s)	306, 495
BlsI	GCNGC	3 cut(s)	188, 740, 834
Bme1390I	CCNGG	5 cut(s)	87, 641, 713, 722, 938
Bme18I	GGWCC	3 cut(s)	112, 121, 397
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	5 cut(s)	112, 121, 397, 715, 914
BmiI	GGNNCC	3 cut(s)	123, 533, 891
BmrFI	CCNGG	5 cut(s)	87, 641, 713, 722, 938
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BpmI	CTGGAG	3 cut(s)	704, 712, 879
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu1102I	GCTNAGC	2 cut(s)	306, 495
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	641
BsaAI	YACGTR	1 cut(s)	907
BsaJI	CCNNGG	3 cut(s)	39, 86, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 232
Bse1I	ACTGG	3 cut(s)	197, 442, 878
Bse3DI	GCAATG	2 cut(s)	24, 817
BseBI	CCWGG	4 cut(s)	87, 713, 722, 938
BseDI	CCNNGG	3 cut(s)	39, 86, 712
BseGI	GGATG	4 cut(s)	162, 222, 759, 777
BseLI	CCNNNNNNNGG	2 cut(s)	105, 232
BseMI	GCAATG	2 cut(s)	24, 817
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	197, 442, 878
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	198, 819
BsgI	GTGCAG	1 cut(s)	818
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	9 cut(s)	182, 236, 421, 451, 717, 725, 738, 877, 916
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	641
BsiWI	CGTACG	1 cut(s)	969
BslFI	GGGAC	4 cut(s)	107, 355, 618, 683
BslI	CCNNNNNNNGG	2 cut(s)	105, 232
BsmFI	GGGAC	4 cut(s)	107, 355, 618, 683
BsnI	GGCC	9 cut(s)	182, 236, 421, 451, 717, 725, 738, 877, 916
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	47, 555
Bsp143I	GATC	4 cut(s)	90, 414, 643, 790
Bsp1720I	GCTNAGC	2 cut(s)	306, 495
BspACI	CCGC	4 cut(s)	461, 626, 637, 739
BspANI	GGCC	9 cut(s)	182, 236, 421, 451, 717, 725, 738, 877, 916
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	123, 533, 891
BspPI	GGATC	2 cut(s)	98, 651
BsrDI	GCAATG	2 cut(s)	24, 817
BsrI	ACTGG	3 cut(s)	197, 442, 878
BssECI	CCNNGG	3 cut(s)	39, 86, 712
BssMI	GATC	4 cut(s)	90, 414, 643, 790
Bst2UI	CCWGG	4 cut(s)	87, 713, 722, 938
Bst4CI	ACNGT	2 cut(s)	100, 847
BstBAI	YACGTR	1 cut(s)	907
BstC8I	GCNNGC	2 cut(s)	184, 252
BstDEI	CTNAG	4 cut(s)	177, 306, 453, 495
BstF5I	GGATG	4 cut(s)	162, 222, 759, 777
BstKTI	GATC	4 cut(s)	93, 417, 646, 793
BstMBI	GATC	4 cut(s)	90, 414, 643, 790
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 529, 538
BstNI	CCWGG	4 cut(s)	87, 713, 722, 938
BstNSI	RCATGY	2 cut(s)	202, 679
BstSCI	CCNGG	5 cut(s)	85, 639, 711, 720, 936
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	198, 819
BstX2I	RGATCY	2 cut(s)	414, 643
BstYI	RGATCY	2 cut(s)	414, 643
BsuRI	GGCC	9 cut(s)	182, 236, 421, 451, 717, 725, 738, 877, 916
BtsCI	GGATG	4 cut(s)	162, 222, 759, 777
BtsIMutI	CAGTG	2 cut(s)	852, 885
Cac8I	GCNNGC	2 cut(s)	184, 252
CaiI	CAGNNNCTG	1 cut(s)	192
Cfr13I	GGNCC	5 cut(s)	112, 121, 397, 715, 914
Csp6I	GTAC	5 cut(s)	202, 745, 757, 820, 970
CviAII	CATG	6 cut(s)	104, 199, 218, 630, 676, 873
CviQI	GTAC	5 cut(s)	202, 745, 757, 820, 970
DdeI	CTNAG	4 cut(s)	177, 306, 453, 495
DpnI	GATC	4 cut(s)	92, 416, 645, 792
DpnII	GATC	4 cut(s)	90, 414, 643, 790
DraIII	CACNNNGTG	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	736, 875
Eco147I	AGGCCT	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	555
Eco47I	GGWCC	3 cut(s)	112, 121, 397
Eco88I	CYCGRG	1 cut(s)	38
EcoO109I	RGGNCCY	4 cut(s)	112, 121, 715, 914
EcoRII	CCWGG	4 cut(s)	85, 711, 720, 936
EcoT38I	GRGCYC	1 cut(s)	555
FaeI	CATG	6 cut(s)	107, 202, 221, 633, 679, 876
FaqI	GGGAC	4 cut(s)	107, 355, 618, 683
FatI	CATG	6 cut(s)	103, 198, 217, 629, 675, 872
FauI	CCCGC	3 cut(s)	468, 633, 644
FauNDI	CATATG	2 cut(s)	402, 501
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	3 cut(s)	187, 739, 833
FokI	GGATG	4 cut(s)	149, 209, 746, 764
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	3 cut(s)	187, 739, 833
FspBI	CTAG	2 cut(s)	228, 542
GluI	GCNGC	3 cut(s)	187, 739, 833
GsuI	CTGGAG	3 cut(s)	704, 712, 879
HaeIII	GGCC	9 cut(s)	182, 236, 421, 451, 717, 725, 738, 877, 916
HapII	CCGG	1 cut(s)	641
Hin1II	CATG	6 cut(s)	107, 202, 221, 633, 679, 876
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	15, 317, 323, 867
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	2 cut(s)	679, 800
Hpy166II	GTNNAC	4 cut(s)	214, 397, 850, 934
Hpy188I	TCNGA	4 cut(s)	73, 171, 322, 367
Hpy188III	TCNNGA	3 cut(s)	94, 314, 729
Hpy8I	GTNNAC	4 cut(s)	214, 397, 850, 934
Hpy99I	CGWCG	1 cut(s)	752
HpyAV	CCTTC	7 cut(s)	103, 326, 435, 474, 551, 568, 614
HpyCH4III	ACNGT	2 cut(s)	100, 847
HpyCH4IV	ACGT	4 cut(s)	375, 750, 906, 968
HpyCH4V	TGCA	3 cut(s)	250, 505, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 529, 538
HpyF3I	CTNAG	4 cut(s)	177, 306, 453, 495
HpySE526I	ACGT	4 cut(s)	375, 750, 906, 968
Hsp92II	CATG	6 cut(s)	107, 202, 221, 633, 679, 876
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	4 cut(s)	90, 414, 643, 790
LmnI	GCTCC	2 cut(s)	537, 889
Lsp1109I	GCAGC	2 cut(s)	198, 819
MaeI	CTAG	2 cut(s)	228, 542
MaeII	ACGT	4 cut(s)	375, 750, 906, 968
MaeIII	GTNAC	3 cut(s)	140, 376, 685
MalI	GATC	4 cut(s)	92, 416, 645, 792
MboI	GATC	4 cut(s)	90, 414, 643, 790
MflI	RGATCY	2 cut(s)	414, 643
MhlI	GDGCHC	2 cut(s)	47, 555
MlsI	TGGCCA	1 cut(s)	877
MluCI	AATT	4 cut(s)	436, 612, 616, 1002
MluNI	TGGCCA	1 cut(s)	877
MlyI	GAGTC	3 cut(s)	24, 311, 317
Mox20I	TGGCCA	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	877
MseI	TTAA	4 cut(s)	408, 435, 569, 615
MslI	CAYNNNNRTG	2 cut(s)	674, 786
Msp20I	TGGCCA	1 cut(s)	877
MspA1I	CMGCKG	1 cut(s)	741
MspI	CCGG	1 cut(s)	641
MspR9I	CCNGG	5 cut(s)	87, 641, 713, 722, 938
MvaI	CCWGG	4 cut(s)	87, 713, 722, 938
MwoI	GCNNNNNNNGC	3 cut(s)	195, 529, 538
NciI	CCSGG	1 cut(s)	641
NdeI	CATATG	2 cut(s)	402, 501
NdeII	GATC	4 cut(s)	90, 414, 643, 790
NlaIII	CATG	6 cut(s)	107, 202, 221, 633, 679, 876
NlaIV	GGNNCC	3 cut(s)	123, 533, 891
NmeAIII	GCCGAG	1 cut(s)	633
NmuCI	GTSAC	2 cut(s)	140, 685
NspI	RCATGY	2 cut(s)	202, 679
OliI	CACNNNNGTG	1 cut(s)	786
PceI	AGGCCT	1 cut(s)	725
PciI	ACATGT	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	867
Pfl23II	CGTACG	1 cut(s)	969
PkrI	GCNGC	3 cut(s)	188, 740, 834
PleI	GAGTC	3 cut(s)	23, 311, 317
PpsI	GAGTC	3 cut(s)	23, 311, 317
Ppu21I	YACGTR	1 cut(s)	907
PpuMI	RGGWCCY	2 cut(s)	112, 121
PscI	ACATGT	1 cut(s)	675
PshBI	ATTAAT	2 cut(s)	435, 615
Psp1406I	AACGTT	1 cut(s)	375
Psp5II	RGGWCCY	2 cut(s)	112, 121
Psp6I	CCWGG	4 cut(s)	85, 711, 720, 936
PspGI	CCWGG	4 cut(s)	85, 711, 720, 936
PspLI	CGTACG	1 cut(s)	969
PspN4I	GGNNCC	3 cut(s)	123, 533, 891
PspPI	GGNCC	5 cut(s)	112, 121, 397, 715, 914
PspPPI	RGGWCCY	2 cut(s)	112, 121
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	2 cut(s)	414, 643
RsaI	GTAC	5 cut(s)	203, 746, 758, 821, 971
RsaNI	GTAC	5 cut(s)	202, 745, 757, 820, 970
RseI	CAYNNNNRTG	2 cut(s)	674, 786
SaqAI	TTAA	4 cut(s)	408, 435, 569, 615
SatI	GCNGC	3 cut(s)	187, 739, 833
Sau3AI	GATC	4 cut(s)	90, 414, 643, 790
Sau96I	GGNCC	5 cut(s)	112, 121, 397, 715, 914
SchI	GAGTC	3 cut(s)	24, 311, 317
ScrFI	CCNGG	5 cut(s)	87, 641, 713, 722, 938
SduI	GDGCHC	2 cut(s)	47, 555
SinI	GGWCC	3 cut(s)	112, 121, 397
SmiMI	CAYNNNNRTG	2 cut(s)	674, 786
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	4 cut(s)	436, 612, 616, 1002
SseBI	AGGCCT	1 cut(s)	725
SsiI	CCGC	4 cut(s)	461, 626, 637, 739
SspMI	CTAG	2 cut(s)	228, 542
StuI	AGGCCT	1 cut(s)	725
StyD4I	CCNGG	5 cut(s)	85, 639, 711, 720, 936
TaaI	ACNGT	2 cut(s)	100, 847
TaiI	ACGT	4 cut(s)	378, 753, 909, 971
TaqI	TCGA	3 cut(s)	18, 315, 555
TasI	AATT	4 cut(s)	436, 612, 616, 1002
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	4 cut(s)	408, 435, 569, 615
Tru9I	TTAA	4 cut(s)	408, 435, 569, 615
TscAI	CASTG	2 cut(s)	852, 885
TseFI	GTSAC	2 cut(s)	140, 685
TseI	GCWGC	2 cut(s)	186, 832
Tsp45I	GTSAC	2 cut(s)	140, 685
TspDTI	ATGAA	2 cut(s)	52, 92
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	852, 885
VpaK11BI	GGWCC	3 cut(s)	112, 121, 397
VspI	ATTAAT	2 cut(s)	435, 615
XapI	RAATTY	1 cut(s)	1002
XceI	RCATGY	2 cut(s)	202, 679
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	2 cut(s)	228, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.