Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

20082535 .. 20087388

Gene Structure 4854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1168600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGATAGCGGTGGAAATGGAGACAACGTCACTTCCTTTTTATGCGAATTGTGAGAGAGGGCAGTTGAACTATCCAGCGAAAAGGAATGAGCCACGTCCTCTTCATGAATGCATCTTAACTTTTTCTGCCACATGTAAGTATGTATATGTATACAGCACTTCACGTAAAGGGAGTGTGACCATAATATCAGATACACAAACGTCCAAAGCCCTTCAAATAGATTGTTCACAACCTTTCTTTTTCTGTTTATTTTTGGAGTTTCAGAAAATGGGAGTGGAGTCTGTGGAGAGAGAACGCGAAAGCAATGAGGGTACAATCCCAGCTGAGTTCATTAGGTCGGAGAACGAGCAACCGGGAATCACAACCGTTCATGGGAAAGTCTTGGAAGTACCAATAATTGATTTCAGTGACCCTGATGAGGAAAAGCTGATCGTCCAAATTACTGAGGCCAGCTCCAACTGGGGCATGTACCAGATAGTGAACCACGACATTCCCAGCGAGGTCATAAGCAAATTGCAGGCTGTTGGGAAGGAGTTTTTTGAGCTTCCACAGGAGGAAAAGGAGGCTTATGCTAAGCCTCCGGACTCCGGCTCAATTGAAGGCTATGGGACAAAGCTCTTCAAGGAAATTTCTGAAGGCGATACTACGAAGAAAGGGTGGGTGGACAATCTGTTCAATAAGATTTGGCCTCCATCTGTTGTTAATTACCAGTTCTGGCCTAAGAACCCACCTTCTTACAGGGAAGCTAATGAAGAGTATGCTAAGCATTTGCACAACGTGGTGGAAAAGCTATTTAGGCTGCTATCTTTAGGGTTAGGGCTTGAAGGACAAGAGTTAAAGAAGGCTGCCGGTGGTGATAACTTAGAGTACCTTCTCAAAATTAACTACTACCCACCATGTCCTCGCCCTGATCTTGCCCTTGGAGTGGTGGCTCACACCGACATGTCCACCGTCACCATTCTCGTCCCCAACGATGTTCAGGGCCTCCAGGCTTGCAAAGATGGCCGGTGGTACGACGTTAAGTACATCCCTAATGCCCTTGTCATCCACATTGGTGATCAGATGGAGATAATGAGCAATGGAAAGTACACGAGTGTCCTGCACAGAACCACTGTGAACAAGGATAAGACAAGAATCTCATGGCCTGTGTTCTTGGAGCCGCCAGCAGACCACGTCGTGGGTCCTCATCCACAGCTTGTGAACGCCGTTAATCAACCAAAGTACAAGACCAAGAAGTACGGCGACTATGTTTACTGTAAGATTAACAAGCTTCCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

427

Amino Acids

48.34

Weight (kDa)

5.69

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	130 - 241	6.6e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	290 - 387	3.5e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	2 cut(s)	8, 1160
AcoI	YGGCCR	1 cut(s)	1003
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	654
AdeI	CACNNNGTG	2 cut(s)	778, 1177
AfaI	GTAC	9 cut(s)	313, 390, 470, 869, 1013, 1025, 1088, 1223, 1238
AfiI	CCNNNNNNNGG	5 cut(s)	372, 418, 587, 925, 1177
AflIII	ACRYGT	2 cut(s)	131, 942
AgsI	TTSAA	6 cut(s)	67, 215, 599, 622, 676, 824
AjiI	CACGTC	2 cut(s)	95, 1174
AjnI	CCWGG	1 cut(s)	987
AleI	CACNNNNGTG	1 cut(s)	1053
AloI	GAACNNNNNNTCC	2 cut(s)	656, 688
AluBI	AGCT	9 cut(s)	323, 427, 453, 544, 616, 746, 790, 1195, 1270
AluI	AGCT	9 cut(s)	323, 427, 453, 544, 616, 746, 790, 1195, 1270
Alw26I	GTCTC	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	6 cut(s)	447, 686, 716, 982, 1003, 1142
ApeKI	GCWGC	2 cut(s)	799, 845
ApoI	RAATTY	1 cut(s)	627
AspS9I	GGNCC	2 cut(s)	982, 1181
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	3 cut(s)	866, 946, 1067
AvaII	GGWCC	1 cut(s)	1181
BauI	CACGAG	1 cut(s)	1090
BbvI	GCAGC	2 cut(s)	786, 832
BccI	CCATC	3 cut(s)	700, 995, 1057
BceAI	ACGGC	2 cut(s)	1190, 1255
BcgI	CGANNNNNNTGC	2 cut(s)	1081, 1115
BciT130I	CCWGG	1 cut(s)	989
BclI	TGATCA	1 cut(s)	1057
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	14
BisI	GCNGC	3 cut(s)	800, 846, 1160
BlpI	GCTNAGC	2 cut(s)	573, 762
BlsI	GCNGC	3 cut(s)	801, 847, 1161
Bme1390I	CCNGG	2 cut(s)	354, 989
Bme18I	GGWCC	1 cut(s)	1181
BmgBI	CACGTC	2 cut(s)	95, 1174
BmgT120I	GGNCC	2 cut(s)	982, 1181
BmiI	GGNNCC	2 cut(s)	1158, 1182
BmrFI	CCNGG	2 cut(s)	354, 989
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpmI	CTGGAG	1 cut(s)	971
Bpu1102I	GCTNAGC	2 cut(s)	573, 762
BpuMI	CCSGG	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	919
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	5 cut(s)	372, 418, 587, 925, 1177
Bse118I	RCCGGY	2 cut(s)	848, 1005
Bse1I	ACTGG	2 cut(s)	464, 709
Bse3DI	GCAATG	2 cut(s)	310, 1084
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	989
BseDI	CCNNGG	1 cut(s)	919
BseGI	GGATG	3 cut(s)	1026, 1044, 1186
BseLI	CCNNNNNNNGG	5 cut(s)	372, 418, 587, 925, 1177
BseMI	GCAATG	2 cut(s)	310, 1084
BseMII	CTCAG	2 cut(s)	315, 435
BseNI	ACTGG	2 cut(s)	464, 709
BseXI	GCAGC	2 cut(s)	786, 832
BseYI	CCCAGC	2 cut(s)	319, 494
BsgI	GTGCAG	1 cut(s)	1085
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	6 cut(s)	449, 688, 718, 984, 1005, 1144
BsiSI	CCGG	5 cut(s)	353, 581, 588, 849, 1006
BslFI	GGGAC	2 cut(s)	622, 950
BslI	CCNNNNNNNGG	5 cut(s)	372, 418, 587, 925, 1177
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	622, 950
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	6 cut(s)	449, 688, 718, 984, 1005, 1144
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	429, 910, 1057
Bsp1720I	GCTNAGC	2 cut(s)	573, 762
BspACI	CCGC	2 cut(s)	8, 1160
BspANI	GGCC	6 cut(s)	449, 688, 718, 984, 1005, 1144
BspCNI	CTCAG	2 cut(s)	316, 436
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	1158, 1182
BspQI	GCTCTTC	1 cut(s)	623
BsrDI	GCAATG	2 cut(s)	310, 1084
BsrFI	RCCGGY	2 cut(s)	848, 1005
BsrI	ACTGG	2 cut(s)	464, 709
BssAI	RCCGGY	2 cut(s)	848, 1005
BssECI	CCNNGG	1 cut(s)	919
BssMI	GATC	3 cut(s)	429, 910, 1057
BssNAI	GTATAC	1 cut(s)	151
BssSI	CACGAG	1 cut(s)	1090
BssT1I	CCWWGG	1 cut(s)	919
Bst1107I	GTATAC	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	1090
Bst2UI	CCWGG	1 cut(s)	989
Bst4CI	ACNGT	4 cut(s)	367, 952, 1114, 1256
Bst6I	CTCTTC	3 cut(s)	105, 623, 747
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	4 cut(s)	451, 519, 994, 1164
BstDEI	CTNAG	6 cut(s)	324, 444, 573, 720, 762, 862
BstF5I	GGATG	3 cut(s)	1026, 1044, 1186
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	3 cut(s)	432, 913, 1060
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	3 cut(s)	429, 910, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	796, 1002
BstNI	CCWGG	1 cut(s)	989
BstNSI	RCATGY	3 cut(s)	135, 469, 946
BstSCI	CCNGG	2 cut(s)	352, 987
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	786, 832
BstZ17I	GTATAC	1 cut(s)	151
BsuRI	GGCC	6 cut(s)	449, 688, 718, 984, 1005, 1144
BtrI	CACGTC	2 cut(s)	95, 1174
BtsCI	GGATG	3 cut(s)	1026, 1044, 1186
BtsIMutI	CAGTG	2 cut(s)	412, 1110
Cac8I	GCNNGC	4 cut(s)	451, 519, 994, 1164
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	848, 1005
Cfr13I	GGNCC	2 cut(s)	982, 1181
Csp6I	GTAC	9 cut(s)	312, 389, 469, 868, 1012, 1024, 1087, 1222, 1237
CviAII	CATG	7 cut(s)	104, 132, 371, 466, 897, 943, 1140
CviQI	GTAC	9 cut(s)	312, 389, 469, 868, 1012, 1024, 1087, 1222, 1237
DdeI	CTNAG	6 cut(s)	324, 444, 573, 720, 762, 862
DpnI	GATC	3 cut(s)	431, 912, 1059
DpnII	GATC	3 cut(s)	429, 910, 1057
DraIII	CACNNNGTG	2 cut(s)	778, 1177
EaeI	YGGCCR	1 cut(s)	1003
Eam1104I	CTCTTC	3 cut(s)	105, 623, 747
EarI	CTCTTC	3 cut(s)	105, 623, 747
Eco130I	CCWWGG	1 cut(s)	919
Eco47I	GGWCC	1 cut(s)	1181
Eco57I	CTGAAG	1 cut(s)	654
EcoO109I	RGGNCCY	2 cut(s)	982, 1181
EcoRII	CCWGG	1 cut(s)	987
EcoT14I	CCWWGG	1 cut(s)	919
EcoT22I	ATGCAT	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	919
FaeI	CATG	7 cut(s)	107, 135, 374, 469, 900, 946, 1143
FaqI	GGGAC	2 cut(s)	622, 950
FatI	CATG	7 cut(s)	103, 131, 370, 465, 896, 942, 1139
FbaI	TGATCA	1 cut(s)	1057
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	800, 846, 1160
FokI	GGATG	3 cut(s)	1013, 1031, 1173
Fsp4HI	GCNGC	3 cut(s)	800, 846, 1160
GluI	GCNGC	3 cut(s)	800, 846, 1160
GsaI	CCCAGC	2 cut(s)	323, 498
GsuI	CTGGAG	1 cut(s)	971
HaeIII	GGCC	6 cut(s)	449, 688, 718, 984, 1005, 1144
HapII	CCGG	5 cut(s)	353, 581, 588, 849, 1006
Hin1II	CATG	7 cut(s)	107, 135, 374, 469, 900, 946, 1143
HindIII	AAGCTT	1 cut(s)	1268
HinfI	GANTC	4 cut(s)	278, 357, 584, 1134
HpaII	CCGG	5 cut(s)	353, 581, 588, 849, 1006
HphI	GGTGA	3 cut(s)	866, 946, 1067
Hpy166II	GTNNAC	9 cut(s)	151, 227, 481, 664, 948, 1089, 1117, 1201, 1252
Hpy188I	TCNGA	5 cut(s)	190, 264, 340, 634, 1062
Hpy188III	TCNNGA	2 cut(s)	104, 581
Hpy8I	GTNNAC	9 cut(s)	151, 227, 481, 664, 948, 1089, 1117, 1201, 1252
Hpy99I	CGWCG	2 cut(s)	1019, 1178
HpyAV	CCTTC	8 cut(s)	221, 523, 593, 629, 741, 818, 835, 881
HpyCH4III	ACNGT	4 cut(s)	367, 952, 1114, 1256
HpyCH4IV	ACGT	7 cut(s)	26, 94, 163, 200, 777, 1017, 1173
HpyCH4V	TGCA	5 cut(s)	111, 517, 772, 996, 1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	796, 1002
HpyF3I	CTNAG	6 cut(s)	324, 444, 573, 720, 762, 862
HpySE526I	ACGT	7 cut(s)	26, 94, 163, 200, 777, 1017, 1173
Hsp92II	CATG	7 cut(s)	107, 135, 374, 469, 900, 946, 1143
Kpn2I	TCCGGA	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	1057
Kzo9I	GATC	3 cut(s)	429, 910, 1057
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	458, 1156
Lsp1109I	GCAGC	2 cut(s)	786, 832
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	7 cut(s)	26, 94, 163, 200, 777, 1017, 1173
MaeIII	GTNAC	4 cut(s)	27, 175, 407, 952
MalI	GATC	3 cut(s)	431, 912, 1059
MboI	GATC	3 cut(s)	429, 910, 1057
MboII	GAAGA	4 cut(s)	92, 610, 661, 764
MfeI	CAATTG	1 cut(s)	594
MluCI	AATT	8 cut(s)	46, 396, 438, 512, 594, 627, 703, 879
MlyI	GAGTC	2 cut(s)	287, 578
MmeI	TCCRAC	2 cut(s)	318, 480
Mph1103I	ATGCAT	1 cut(s)	113
MroI	TCCGGA	1 cut(s)	580
MseI	TTAA	7 cut(s)	116, 702, 836, 882, 1020, 1209, 1263
MslI	CAYNNNNRTG	2 cut(s)	941, 1053
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	5 cut(s)	353, 581, 588, 849, 1006
MspR9I	CCNGG	2 cut(s)	354, 989
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	989
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	796, 1002
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	429, 910, 1057
NlaIII	CATG	7 cut(s)	107, 135, 374, 469, 900, 946, 1143
NlaIV	GGNNCC	2 cut(s)	1158, 1182
NmuCI	GTSAC	4 cut(s)	27, 175, 407, 952
NsiI	ATGCAT	1 cut(s)	113
NspI	RCATGY	3 cut(s)	135, 469, 946
OliI	CACNNNNGTG	1 cut(s)	1053
PagI	TCATGA	1 cut(s)	103
PciI	ACATGT	2 cut(s)	131, 942
PciSI	GCTCTTC	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	1 cut(s)	969
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	357, 1134
PflFI	GACNNNGTC	2 cut(s)	25, 1172
PflMI	CCANNNNNTGG	1 cut(s)	1177
PkrI	GCNGC	3 cut(s)	801, 847, 1161
PleI	GAGTC	2 cut(s)	286, 578
PpsI	GAGTC	2 cut(s)	286, 578
Ppu21I	YACGTR	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	1181
PscI	ACATGT	2 cut(s)	131, 942
Psp5II	RGGWCCY	1 cut(s)	1181
Psp6I	CCWGG	1 cut(s)	987
PspFI	CCCAGC	2 cut(s)	319, 494
PspGI	CCWGG	1 cut(s)	987
PspN4I	GGNNCC	2 cut(s)	1158, 1182
PspPI	GGNCC	2 cut(s)	982, 1181
PspPPI	RGGWCCY	1 cut(s)	1181
PsyI	GACNNNGTC	2 cut(s)	25, 1172
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	9 cut(s)	313, 390, 470, 869, 1013, 1025, 1088, 1223, 1238
RsaNI	GTAC	9 cut(s)	312, 389, 469, 868, 1012, 1024, 1087, 1222, 1237
RseI	CAYNNNNRTG	2 cut(s)	941, 1053
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	7 cut(s)	116, 702, 836, 882, 1020, 1209, 1263
SatI	GCNGC	3 cut(s)	800, 846, 1160
Sau3AI	GATC	3 cut(s)	429, 910, 1057
Sau96I	GGNCC	2 cut(s)	982, 1181
SchI	GAGTC	2 cut(s)	287, 578
ScrFI	CCNGG	2 cut(s)	354, 989
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	1181
SmiMI	CAYNNNNRTG	2 cut(s)	941, 1053
Sse9I	AATT	8 cut(s)	46, 396, 438, 512, 594, 627, 703, 879
SsiI	CCGC	2 cut(s)	8, 1160
StyD4I	CCNGG	2 cut(s)	352, 987
StyI	CCWWGG	1 cut(s)	919
TaaI	ACNGT	4 cut(s)	367, 952, 1114, 1256
TaiI	ACGT	7 cut(s)	29, 97, 166, 203, 780, 1020, 1176
TasI	AATT	8 cut(s)	46, 396, 438, 512, 594, 627, 703, 879
TatI	WGTACW	3 cut(s)	1023, 1086, 1221
TauI	GCSGC	1 cut(s)	1162
TfiI	GAWTC	2 cut(s)	357, 1134
Tru1I	TTAA	7 cut(s)	116, 702, 836, 882, 1020, 1209, 1263
Tru9I	TTAA	7 cut(s)	116, 702, 836, 882, 1020, 1209, 1263
TscAI	CASTG	2 cut(s)	412, 1117
TseFI	GTSAC	4 cut(s)	27, 175, 407, 952
TseI	GCWGC	2 cut(s)	799, 845
Tsp45I	GTSAC	4 cut(s)	27, 175, 407, 952
TspDTI	ATGAA	5 cut(s)	92, 120, 319, 359, 765
TspRI	CASTG	2 cut(s)	412, 1117
Tth111I	GACNNNGTC	2 cut(s)	25, 1172
Van91I	CCANNNNNTGG	1 cut(s)	1177
VpaK11BI	GGWCC	1 cut(s)	1181
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	3 cut(s)	135, 469, 946
XmiI	GTMKAC	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.