Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Reverse (-)

56327126 .. 56332029

Gene Structure 4904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG376600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGGGTAGAGAGAGTTCAAGACATTGCTTCAGCAACTTCTGAGGACACAATCCCAGTGGAGTTCATCAGGTCAGAGAATGAGCAGCCTGGAATCACCACCGTCCCCGGCACAGTCCTCGAGTGCCCTACCATTGATTTCAGCGACCCTGATGAGGAGAAACTCCTCAAACAAATCTTCGAGGCCAGCACCGACTGGGGCATGTACCAAATCGTGAACCACGACATTTCCAACGAGGCCATTGCCAAGTTGCAGGCCGTCGGAAAAGATTTCTTTGAGCTTCCGCAGGAGGAGAAAGAGGTTTACGCAAAAGATCCGAACTCTAAGTCCGTGGAGGGATACGGAACATTTTTACAGAAGGAACTAGAAGGGAAGAAAGGGTGGGTGGATCATCTGTTCCATAAGATTTGGCCACCTTCTGCCATTAACTACTGCTTTTGGCCTAAGAATCCAGCTTCTTACAGGGAAGCTAATGAAGAGTATGCAAAGAATCTACATAAGGTGGTGGAGAAGCTATTTAAACTGTTATCTTTGGGGTTGGGGCTTGAAGCACAAGAACTGAAGAAGGCAGTTGGTGGTGATGACTTGGTGTACCTTCTCAAAATCAATTACTACCCGCCTTGTCCCCGCCCTGATCTTGCTCTTGGTGTGGTTGCCCATACGGACATGTCCGCCCTAACCATTCTCGTCCCAAACGACGTTCAGGGCCTCCAAGCTTGCCGAGATGGCCAGTGGTACGATGTCAAATATATCCCTAATGCCCTAGTCATCCACATTGGTGATCAAATGGAGGTATATATATATATATATACACCTCTCTCTCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

276

Amino Acids

31.13

Weight (kDa)

4.74

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 149	9e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 265	2.4e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	284, 617, 628, 672
AclWI	GGATC	2 cut(s)	308, 396
AcoI	YGGCCR	2 cut(s)	410, 727
AcuI	CTGAAG	2 cut(s)	15, 581
AfaI	GTAC	3 cut(s)	206, 593, 737
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	2 cut(s)	20, 548
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	777
AloI	GAACNNNNNNTCC	4 cut(s)	311, 343, 380, 412
AluBI	AGCT	5 cut(s)	280, 455, 470, 514, 716
AluI	AGCT	5 cut(s)	280, 455, 470, 514, 716
AlwI	GGATC	2 cut(s)	308, 396
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	7 cut(s)	183, 237, 255, 410, 440, 706, 727
ApeKI	GCWGC	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspS9I	GGNCC	1 cut(s)	706
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	88, 590, 791
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	128
BalI	TGGCCA	2 cut(s)	412, 729
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	719
BceAI	ACGGC	1 cut(s)	242
BcgI	CGANNNNNNTGC	4 cut(s)	100, 134, 224, 258
BciT130I	CCWGG	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	332
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	2 cut(s)	365, 764
BfuI	GTATCC	1 cut(s)	332
BglI	GCCNNNNNGGC	1 cut(s)	726
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	90, 108
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	706
BmrFI	CCNGG	2 cut(s)	90, 108
BmrI	ACTGGG	2 cut(s)	50, 205
BmuI	ACTGGG	2 cut(s)	50, 205
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	106, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	56, 200, 730
Bse3DI	GCAATG	2 cut(s)	24, 240
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	106, 330
BseGI	GGATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	2 cut(s)	24, 240
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	3 cut(s)	56, 200, 730
BseRI	GAGGAG	3 cut(s)	155, 170, 305
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	7 cut(s)	185, 239, 257, 412, 442, 708, 729
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	3 cut(s)	89, 609, 674
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	3 cut(s)	89, 609, 674
BsnI	GGCC	7 cut(s)	185, 239, 257, 412, 442, 708, 729
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	313, 388, 634, 781
BspACI	CCGC	4 cut(s)	284, 617, 628, 672
BspANI	GGCC	7 cut(s)	185, 239, 257, 412, 442, 708, 729
BspCNI	CTCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	308, 396
BsrDI	GCAATG	2 cut(s)	24, 240
BsrI	ACTGG	3 cut(s)	56, 200, 730
BssECI	CCNNGG	2 cut(s)	106, 330
BssMI	GATC	4 cut(s)	313, 388, 634, 781
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	103, 115, 525
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	187, 255, 718
BstDEI	CTNAG	3 cut(s)	42, 324, 444
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	768
BstKTI	GATC	4 cut(s)	316, 391, 637, 784
BstMBI	GATC	4 cut(s)	313, 388, 634, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	726
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	2 cut(s)	205, 670
BstSCI	CCNGG	2 cut(s)	88, 106
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	7 cut(s)	185, 239, 257, 412, 442, 708, 729
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	768
BtsIMutI	CAGTG	2 cut(s)	63, 737
Cac8I	GCNNGC	3 cut(s)	187, 255, 718
Cfr13I	GGNCC	1 cut(s)	706
Csp6I	GTAC	3 cut(s)	205, 592, 736
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviAII	CATG	2 cut(s)	202, 667
CviQI	GTAC	3 cut(s)	205, 592, 736
DdeI	CTNAG	3 cut(s)	42, 324, 444
DpnI	GATC	4 cut(s)	315, 390, 636, 783
DpnII	GATC	4 cut(s)	313, 388, 634, 781
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	2 cut(s)	410, 727
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	661
Eco57I	CTGAAG	2 cut(s)	15, 581
Eco88I	CYCGRG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	205, 670
FaqI	GGGAC	3 cut(s)	89, 609, 674
FatI	CATG	2 cut(s)	201, 666
FauI	CCCGC	2 cut(s)	624, 635
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	755
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	2 cut(s)	365, 764
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	7 cut(s)	185, 239, 257, 412, 442, 708, 729
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	205, 670
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	3 cut(s)	93, 448, 490
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	88, 590, 791
Hpy166II	GTNNAC	3 cut(s)	217, 304, 592
Hpy188I	TCNGA	4 cut(s)	43, 76, 263, 318
Hpy188III	TCNNGA	2 cut(s)	20, 214
Hpy8I	GTNNAC	3 cut(s)	217, 304, 592
Hpy99I	CGWCG	2 cut(s)	263, 701
HpyAV	CCTTC	5 cut(s)	352, 362, 426, 559, 605
HpyCH4III	ACNGT	3 cut(s)	103, 115, 525
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	2 cut(s)	253, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	726
HpyF3I	CTNAG	3 cut(s)	42, 324, 444
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	2 cut(s)	205, 670
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	313, 388, 634, 781
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	365, 764
MaeII	ACGT	1 cut(s)	699
MalI	GATC	4 cut(s)	315, 390, 636, 783
MboI	GATC	4 cut(s)	313, 388, 634, 781
MboII	GAAGA	4 cut(s)	169, 385, 488, 574
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	128
MlsI	TGGCCA	2 cut(s)	412, 729
MluCI	AATT	1 cut(s)	607
MluNI	TGGCCA	2 cut(s)	412, 729
MmeI	TCCRAC	2 cut(s)	241, 255
Mox20I	TGGCCA	2 cut(s)	412, 729
MscI	TGGCCA	2 cut(s)	412, 729
MseI	TTAA	2 cut(s)	426, 519
MslI	CAYNNNNRTG	1 cut(s)	777
Msp20I	TGGCCA	2 cut(s)	412, 729
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	90, 108
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	726
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	313, 388, 634, 781
NlaIII	CATG	2 cut(s)	205, 670
NmeAIII	GCCGAG	1 cut(s)	746
NspI	RCATGY	2 cut(s)	205, 670
OliI	CACNNNNGTG	1 cut(s)	777
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 693
PfeI	GAWTC	3 cut(s)	93, 448, 490
PkrI	GCNGC	1 cut(s)	87
PscI	ACATGT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	706
PspXI	VCTCGAGB	1 cut(s)	119
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	3 cut(s)	206, 593, 737
RsaNI	GTAC	3 cut(s)	205, 592, 736
RseI	CAYNNNNRTG	1 cut(s)	777
SaqAI	TTAA	2 cut(s)	426, 519
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	4 cut(s)	313, 388, 634, 781
Sau96I	GGNCC	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	90, 108
SduI	GDGCHC	1 cut(s)	128
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	607
SsiI	CCGC	4 cut(s)	284, 617, 628, 672
SspMI	CTAG	2 cut(s)	365, 764
StyD4I	CCNGG	2 cut(s)	88, 106
TaaI	ACNGT	3 cut(s)	103, 115, 525
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	2 cut(s)	120, 180
TasI	AATT	1 cut(s)	607
TfiI	GAWTC	3 cut(s)	93, 448, 490
Tru1I	TTAA	2 cut(s)	426, 519
Tru9I	TTAA	2 cut(s)	426, 519
TscAI	CASTG	2 cut(s)	63, 737
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	55, 489
TspGWI	ACGGA	3 cut(s)	319, 357, 677
TspRI	CASTG	2 cut(s)	63, 737
XceI	RCATGY	2 cut(s)	205, 670
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	2 cut(s)	365, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.