Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

17682179 .. 17683446

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43935.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAACGTCGAAAGAGACCAACACATATCTCCACCGTGTCTCCTAACCAAGAAGATCCCTATCGTTGATCTAAGCGATCCAAGCGACGAGCTCGTGGCTCATGCAGTGGTGAAAGCGAGCGAAGAGTGGGGGATTTTTCAGTTGGTTAACCACGGCATTCCTGCCGAATTGATGCGGCGGCTGCAAGAAGTGGGGAGGCAGTTTTTCGAGCTCCCGGCTTCCGAAAAAGAATCTGTCACAAGGCCAGCCGACTCCCAAGACATCGAAGGTTTCTTTTCCAAGGATCCAAAAAAACTAAAGGCTTGGGACGATCATCTGATTCACAATATCTGGCCACCATCGTCCATCAACTATAGATATTGGCCTAACAATCCTTCAGATTACAGTGGTGATGGTTTCAGGGAGGTGACTAAGGAGTACACAAGGAATGTTACAAATCTAACGGAGAAGATTGTTGGTGGCGATAAAGCACAGTATGTGATGAGGATCAATTACTATCCGCCATCGGATTCAGCCATCGGAGCACCGGCGCACACAGATTTTTGTGGACTCGCACTTCTTGTCTCCAACGAGGTTCCAGGGCTTCAAGTGTTCAAGGATGACCATTGGTTCGACGTTGAGTATATCAACTCCGCTGTCATTGTCCTCATTGGGGATCAGATCATGAGGATGAGCAACGGGAAGTACAAGAACGTGCTACACAGATCAATAATGGATGCGAAAAAGACAAGAATGTCGTGGCCGATTTTGGTAGAGCCTAAGCGTGGTTTGGTCGTGGGACCTTTGCCTGAGCTCACGGGAGACGAGAATCCTCCCAAGTTTGAGTCTTTAACTTTTGAAGACTATGTATACCGCAAGATCATAAAGGTTCTTCGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0010033 GO:0016491 GO:0016705 GO:0016706 GO:0042221 GO:0042440 GO:0045431 GO:0046148 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055114 GO:0071704 GO:0080167 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

293

Amino Acids

33.46

Weight (kDa)

5.68

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 123	1.2e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	159 - 252	1.5e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	849
AciI	CCGC	5 cut(s)	175, 178, 500, 633, 853
AclWI	GGATC	6 cut(s)	49, 71, 278, 291, 494, 663
AcoI	YGGCCR	2 cut(s)	332, 740
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	419, 686
AfiI	CCNNNNNNNGG	2 cut(s)	652, 764
AgsI	TTSAA	3 cut(s)	587, 595, 839
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	3 cut(s)	91, 211, 793
AluI	AGCT	3 cut(s)	91, 211, 793
Alw21I	GWGCWC	4 cut(s)	93, 213, 526, 795
Alw26I	GTCTC	4 cut(s)	9, 44, 568, 795
AlwI	GGATC	6 cut(s)	49, 71, 278, 291, 494, 663
AoxI	GGCC	4 cut(s)	242, 332, 362, 740
ApeKI	GCWGC	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	779
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	121, 401, 418
AvaII	GGWCC	1 cut(s)	779
BalI	TGGCCA	1 cut(s)	334
BamHI	GGATCC	1 cut(s)	283
BanII	GRGCYC	3 cut(s)	93, 213, 795
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	4 cut(s)	93, 213, 526, 795
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	5 cut(s)	346, 353, 386, 511, 524
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	4 cut(s)	9, 44, 568, 795
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	3 cut(s)	176, 179, 182
BlsI	GCNGC	3 cut(s)	177, 180, 183
Bme1390I	CCNGG	2 cut(s)	215, 579
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	3 cut(s)	285, 576, 780
BmrFI	CCNGG	2 cut(s)	215, 579
BmsI	GCATC	2 cut(s)	162, 706
BpiI	GAAGAC	1 cut(s)	846
Bpu10I	CCTNAGC	2 cut(s)	759, 789
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	2 cut(s)	59, 485
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	151, 279, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 764
Bse118I	RCCGGY	1 cut(s)	526
Bse8I	GATNNNNATC	2 cut(s)	59, 485
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	151, 279, 578
BseGI	GGATG	3 cut(s)	604, 675, 721
BseJI	GATNNNNATC	2 cut(s)	59, 485
BseLI	CCNNNNNNNGG	2 cut(s)	652, 764
BseMII	CTCAG	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	168
BshFI	GGCC	4 cut(s)	244, 334, 364, 742
BsiHKAI	GWGCWC	4 cut(s)	93, 213, 526, 795
BsiSI	CCGG	2 cut(s)	215, 527
BslFI	GGGAC	2 cut(s)	320, 792
BslI	CCNNNNNNNGG	2 cut(s)	652, 764
BsmAI	GTCTC	4 cut(s)	9, 44, 568, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	2 cut(s)	320, 792
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	4 cut(s)	244, 334, 364, 742
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	4 cut(s)	93, 213, 526, 795
BspACI	CCGC	5 cut(s)	175, 178, 500, 633, 853
BspANI	GGCC	4 cut(s)	244, 334, 364, 742
BspCNI	CTCAG	1 cut(s)	781
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	285, 576, 780
BspPI	GGATC	6 cut(s)	49, 71, 278, 291, 494, 663
BspTNI	GGTCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	3 cut(s)	151, 279, 578
BssNAI	GTATAC	1 cut(s)	850
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	850
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	36, 386, 474
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	118, 246
BstDEI	CTNAG	4 cut(s)	71, 411, 759, 789
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	604, 675, 721
BstHHI	GCGC	1 cut(s)	532
BstMAI	GTCTC	4 cut(s)	9, 44, 568, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 181, 521
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	213, 577
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	54, 283
BstYI	RGATCY	2 cut(s)	54, 283
BstZ17I	GTATAC	1 cut(s)	850
BsuRI	GGCC	4 cut(s)	244, 334, 364, 742
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	604, 675, 721
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 391
Cac8I	GCNNGC	2 cut(s)	118, 246
CciI	TCATGA	1 cut(s)	663
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	779
Csp6I	GTAC	2 cut(s)	418, 685
CviAII	CATG	2 cut(s)	101, 664
CviQI	GTAC	2 cut(s)	418, 685
DdeI	CTNAG	4 cut(s)	71, 411, 759, 789
DrdI	GACNNNNNNGTC	1 cut(s)	733
DseDI	GACNNNNNNGTC	1 cut(s)	733
EaeI	YGGCCR	2 cut(s)	332, 740
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	489
Ecl136II	GAGCTC	3 cut(s)	91, 211, 793
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	3 cut(s)	93, 213, 795
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	779
Eco53kI	GAGCTC	3 cut(s)	91, 211, 793
Eco57I	CTGAAG	1 cut(s)	360
EcoICRI	GAGCTC	3 cut(s)	91, 211, 793
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	3 cut(s)	93, 213, 795
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	2 cut(s)	104, 667
FaiI	YATR	9 cut(s)	26, 102, 354, 477, 624, 665, 846, 850, 863
FaqI	GGGAC	2 cut(s)	320, 792
FatI	CATG	2 cut(s)	100, 663
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	3 cut(s)	176, 179, 182
FokI	GGATG	3 cut(s)	611, 682, 728
FriOI	GRGCYC	3 cut(s)	93, 213, 795
Fsp4HI	GCNGC	3 cut(s)	176, 179, 182
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	3 cut(s)	176, 179, 182
HaeIII	GGCC	4 cut(s)	244, 334, 364, 742
HapII	CCGG	2 cut(s)	215, 527
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	2 cut(s)	104, 667
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	7 cut(s)	230, 251, 319, 509, 549, 808, 824
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	215, 527
HphI	GGTGA	3 cut(s)	121, 401, 418
Hpy166II	GTNNAC	4 cut(s)	148, 420, 548, 850
Hpy188I	TCNGA	6 cut(s)	223, 318, 379, 508, 521, 660
Hpy188III	TCNNGA	2 cut(s)	664, 875
Hpy8I	GTNNAC	4 cut(s)	148, 420, 548, 850
Hpy99I	CGWCG	3 cut(s)	11, 89, 617
HpyAV	CCTTC	2 cut(s)	260, 384
HpyCH4III	ACNGT	3 cut(s)	36, 386, 474
HpyCH4IV	ACGT	3 cut(s)	6, 615, 693
HpyCH4V	TGCA	2 cut(s)	104, 184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 181, 521
HpyF3I	CTNAG	4 cut(s)	71, 411, 759, 789
HpySE526I	ACGT	3 cut(s)	6, 615, 693
Hsp92II	CATG	2 cut(s)	104, 667
HspAI	GCGC	1 cut(s)	530
KspAI	GTTAAC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	216, 521
LpnPI	CCDG	9 cut(s)	174, 228, 258, 316, 385, 540, 564, 591, 801
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	162, 706
MaeII	ACGT	3 cut(s)	6, 615, 693
MaeIII	GTNAC	3 cut(s)	235, 406, 430
MboII	GAAGA	5 cut(s)	64, 134, 460, 851, 863
MflI	RGATCY	2 cut(s)	54, 283
MhlI	GDGCHC	4 cut(s)	93, 213, 526, 795
MlsI	TGGCCA	1 cut(s)	334
MluCI	AATT	2 cut(s)	167, 490
MluNI	TGGCCA	1 cut(s)	334
MlyI	GAGTC	3 cut(s)	245, 543, 833
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	7 cut(s)	189, 397, 477, 565, 656, 660, 822
Mox20I	TGGCCA	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	334
MseI	TTAA	2 cut(s)	147, 830
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	2 cut(s)	215, 527
MspR9I	CCNGG	2 cut(s)	215, 579
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	3 cut(s)	81, 181, 521
NciI	CCSGG	1 cut(s)	215
NlaIII	CATG	2 cut(s)	104, 667
NlaIV	GGNNCC	3 cut(s)	285, 576, 780
NmuCI	GTSAC	2 cut(s)	235, 406
PagI	TCATGA	1 cut(s)	663
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	4 cut(s)	230, 319, 509, 808
PkrI	GCNGC	3 cut(s)	177, 180, 183
PleI	GAGTC	3 cut(s)	245, 543, 832
PpsI	GAGTC	3 cut(s)	245, 543, 832
PpuMI	RGGWCCY	1 cut(s)	779
Psp124BI	GAGCTC	3 cut(s)	93, 213, 795
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	3 cut(s)	285, 576, 780
PspPI	GGNCC	1 cut(s)	779
PspPPI	RGGWCCY	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	54, 283
RsaI	GTAC	2 cut(s)	419, 686
RsaNI	GTAC	2 cut(s)	418, 685
RseI	CAYNNNNRTG	1 cut(s)	668
SacI	GAGCTC	3 cut(s)	93, 213, 795
SaqAI	TTAA	2 cut(s)	147, 830
SatI	GCNGC	3 cut(s)	176, 179, 182
Sau96I	GGNCC	1 cut(s)	779
SchI	GAGTC	3 cut(s)	245, 543, 833
ScrFI	CCNGG	2 cut(s)	215, 579
SduI	GDGCHC	4 cut(s)	93, 213, 526, 795
SfaNI	GCATC	2 cut(s)	162, 706
SfcI	CTRYAG	1 cut(s)	352
SgrAI	CRCCGGYG	1 cut(s)	526
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	668
Sse9I	AATT	2 cut(s)	167, 490
SsiI	CCGC	5 cut(s)	175, 178, 500, 633, 853
SstI	GAGCTC	3 cut(s)	93, 213, 795
StyD4I	CCNGG	2 cut(s)	213, 577
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	36, 386, 474
TaiI	ACGT	3 cut(s)	9, 618, 696
TaqI	TCGA	4 cut(s)	9, 207, 264, 612
TasI	AATT	2 cut(s)	167, 490
TatI	WGTACW	2 cut(s)	417, 684
TauI	GCSGC	2 cut(s)	178, 181
TfiI	GAWTC	4 cut(s)	230, 319, 509, 808
Tru1I	TTAA	2 cut(s)	147, 830
Tru9I	TTAA	2 cut(s)	147, 830
TscAI	CASTG	2 cut(s)	111, 391
TseFI	GTSAC	2 cut(s)	235, 406
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	2 cut(s)	235, 406
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	2 cut(s)	111, 391
VpaK11BI	GGWCC	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.