Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

13618490 .. 13624302

Gene Structure 5813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGATAGCGGTGGAAATGGAGACAACGTCACTCCCCTTTTATGGGTATTGTGAGGGAGGACAGTTGAGCTATCTAGCGAAAAGGAATGAGCCACGTCCTCTTCATGAATGGAGTGTGACCATAATATCAGATACACAGAAGTCCAAAGCCCTTCAAATAGATTGTTCACCAGCTTTCTTTTTCTGTTTGTTTTTGGAGTTTCAGAAAATGGGAGTGGAGTCTGTGGAGAGAGAACGCGAAAGCAATGAGGGTACAATCCCAGCTGAGTTCATTAGGTCGGAGAACGAGCAACCGGGAATCACAACCGTTCATGGGAAAGTCTTGGAAGTACCAACAATTGATTTCAGTGACCCTGATGAGGAAAAGCTCATCGTTCAAATTACTGAGGCCAGCTCCAACTGGGGCATGTACCAGATAGTGAACCACGACATTCCCAGCGAGGTCATAAGCAAATTGCAGGCTGTTGGGAAGGAGTTTTTTGAGCTTCCACAGGAGGAAAAGGAGGCTTATGCTAAGCCTCCGGACTCTGGCTCAATAGAAGGCTATGGGACAAAGCTCTTCAAGGAAATTTCTGAAGGCGACATTACGAAGAAAGGGTGGGTGGACAATCTGTTCAATAAGATTTGGCCTCCATCTGTTATTAATTACCAGTTCTGGCCTAAGAACCCACCCTCCTACAGGGAAGCTAATGAGGAGTATGCTAAGCATATGCACAAGGTGGTGGAAAAGCTATTTAGGCTGCTATCTTTAGGGTTAGGGCTTGAAGGACAAGAGTTAAAGAAGGCTGCCGGTGGTGATAACTTGGAGTACCTTCTCAAAATTAACTACTACCCACCATGTCCTCGCCCTGATCTTGCCCTTGGAGTGGTGGCTCACACCGACATGTCCACCGTCACCATTCTTGTCCCCAACGATGTTCAGGGCCTCCAGGCTTGCAAAGATGGCCGTTGGTACGACGTTAAGTACATCCCTAATGCCCTTGTCATCCACATTGGTGATCAGATGGAGATAATGAGCAATGGAAAGTTCAAGAGTGTCCTGCACAGGACCACTGTGAACAAGGATAAGACAAGAATCTCATGGCCTGTGTTCTTGGAGCCGCCAGCAGACCACGTCGTCGGTCCTCATCCACAGCTTGTGAACGCCGTTAATCAACCAAAGTACAAAACCAAGAAGTACGGCGACTATGTTTACTGTAAGATTAATAAGCTTCCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

407

Amino Acids

46.1

Weight (kDa)

5.59

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1115
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	2 cut(s)	8, 1100
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	594
AdeI	CACNNNGTG	1 cut(s)	718
AfaI	GTAC	8 cut(s)	253, 330, 410, 809, 953, 965, 1163, 1178
AfiI	CCNNNNNNNGG	7 cut(s)	41, 42, 312, 358, 527, 678, 865
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	6 cut(s)	155, 377, 562, 616, 764, 1030
AjiI	CACGTC	2 cut(s)	95, 1114
AjnI	CCWGG	1 cut(s)	927
AleI	CACNNNNGTG	1 cut(s)	993
AloI	GAACNNNNNNTCC	4 cut(s)	596, 628, 656, 688
Alw26I	GTCTC	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	6 cut(s)	387, 626, 656, 922, 943, 1082
ApeKI	GCWGC	2 cut(s)	739, 785
ApoI	RAATTY	1 cut(s)	567
AseI	ATTAAT	2 cut(s)	642, 1203
AspS9I	GGNCC	3 cut(s)	922, 1047, 1121
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	4 cut(s)	159, 806, 886, 1007
AvaII	GGWCC	2 cut(s)	1047, 1121
BbvI	GCAGC	2 cut(s)	726, 772
BccI	CCATC	3 cut(s)	640, 935, 997
BceAI	ACGGC	3 cut(s)	930, 1130, 1195
BciT130I	CCWGG	1 cut(s)	929
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	676
BisI	GCNGC	3 cut(s)	740, 786, 1100
BlpI	GCTNAGC	2 cut(s)	513, 702
BlsI	GCNGC	3 cut(s)	741, 787, 1101
Bme1390I	CCNGG	2 cut(s)	294, 929
Bme18I	GGWCC	2 cut(s)	1047, 1121
BmgBI	CACGTC	2 cut(s)	95, 1114
BmgT120I	GGNCC	3 cut(s)	922, 1047, 1121
BmiI	GGNNCC	1 cut(s)	1098
BmrFI	CCNGG	2 cut(s)	294, 929
BmrI	ACTGGG	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	1 cut(s)	911
Bpu1102I	GCTNAGC	2 cut(s)	513, 702
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	859
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 656, 686
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 42, 312, 358, 527, 678, 865
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	2 cut(s)	404, 649
Bse3DI	GCAATG	2 cut(s)	250, 1024
BseAI	TCCGGA	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	929
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	3 cut(s)	966, 984, 1126
BseLI	CCNNNNNNNGG	7 cut(s)	41, 42, 312, 358, 527, 678, 865
BseMI	GCAATG	2 cut(s)	250, 1024
BseMII	CTCAG	2 cut(s)	255, 375
BseNI	ACTGG	2 cut(s)	404, 649
BseRI	GAGGAG	1 cut(s)	707
BseXI	GCAGC	2 cut(s)	726, 772
BseYI	CCCAGC	2 cut(s)	259, 434
BsgI	GTGCAG	1 cut(s)	1025
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	6 cut(s)	389, 628, 658, 924, 945, 1084
BsiSI	CCGG	3 cut(s)	293, 521, 789
BslFI	GGGAC	2 cut(s)	562, 890
BslI	CCNNNNNNNGG	7 cut(s)	41, 42, 312, 358, 527, 678, 865
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	562, 890
BsnI	GGCC	6 cut(s)	389, 628, 658, 924, 945, 1084
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	2 cut(s)	850, 997
Bsp1720I	GCTNAGC	2 cut(s)	513, 702
BspACI	CCGC	2 cut(s)	8, 1100
BspANI	GGCC	6 cut(s)	389, 628, 658, 924, 945, 1084
BspCNI	CTCAG	2 cut(s)	256, 376
BspEI	TCCGGA	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	1098
BspQI	GCTCTTC	1 cut(s)	563
BsrDI	GCAATG	2 cut(s)	250, 1024
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	404, 649
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	2 cut(s)	850, 997
BssT1I	CCWWGG	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	929
Bst4CI	ACNGT	5 cut(s)	63, 307, 892, 1054, 1196
Bst6I	CTCTTC	2 cut(s)	105, 563
BstC8I	GCNNGC	4 cut(s)	391, 459, 934, 1104
BstDEI	CTNAG	5 cut(s)	264, 384, 513, 660, 702
BstENI	CCTNNNNNAGG	1 cut(s)	676
BstF5I	GGATG	3 cut(s)	966, 984, 1126
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	853, 1000
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	850, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	736, 942
BstNI	CCWGG	1 cut(s)	929
BstNSI	RCATGY	2 cut(s)	409, 886
BstSCI	CCNGG	2 cut(s)	292, 927
BstSFI	CTRYAG	1 cut(s)	676
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	726, 772
BsuRI	GGCC	6 cut(s)	389, 628, 658, 924, 945, 1084
BtrI	CACGTC	2 cut(s)	95, 1114
BtsCI	GGATG	3 cut(s)	966, 984, 1126
BtsIMutI	CAGTG	2 cut(s)	352, 1050
Cac8I	GCNNGC	4 cut(s)	391, 459, 934, 1104
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	3 cut(s)	922, 1047, 1121
Csp6I	GTAC	8 cut(s)	252, 329, 409, 808, 952, 964, 1162, 1177
CviAII	CATG	6 cut(s)	104, 311, 406, 837, 883, 1080
CviQI	GTAC	8 cut(s)	252, 329, 409, 808, 952, 964, 1162, 1177
DdeI	CTNAG	5 cut(s)	264, 384, 513, 660, 702
DpnI	GATC	2 cut(s)	852, 999
DpnII	GATC	2 cut(s)	850, 997
DraIII	CACNNNGTG	1 cut(s)	718
DrdI	GACNNNNNNGTC	1 cut(s)	1115
DseDI	GACNNNNNNGTC	1 cut(s)	1115
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	2 cut(s)	105, 563
EarI	CTCTTC	2 cut(s)	105, 563
Eco130I	CCWWGG	1 cut(s)	859
Eco47I	GGWCC	2 cut(s)	1047, 1121
Eco57I	CTGAAG	1 cut(s)	594
EcoNI	CCTNNNNNAGG	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	922
EcoRII	CCWGG	1 cut(s)	927
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	6 cut(s)	107, 314, 409, 840, 886, 1083
FaqI	GGGAC	2 cut(s)	562, 890
FatI	CATG	6 cut(s)	103, 310, 405, 836, 882, 1079
FauNDI	CATATG	1 cut(s)	708
FbaI	TGATCA	1 cut(s)	997
Fnu4HI	GCNGC	3 cut(s)	740, 786, 1100
FokI	GGATG	3 cut(s)	953, 971, 1113
Fsp4HI	GCNGC	3 cut(s)	740, 786, 1100
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	3 cut(s)	740, 786, 1100
GsaI	CCCAGC	2 cut(s)	263, 438
GsuI	CTGGAG	1 cut(s)	911
HaeIII	GGCC	6 cut(s)	389, 628, 658, 924, 945, 1084
HapII	CCGG	3 cut(s)	293, 521, 789
Hin1II	CATG	6 cut(s)	107, 314, 409, 840, 886, 1083
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	4 cut(s)	218, 297, 524, 1074
HpaII	CCGG	3 cut(s)	293, 521, 789
HphI	GGTGA	4 cut(s)	159, 806, 886, 1007
Hpy166II	GTNNAC	7 cut(s)	167, 421, 604, 888, 1057, 1141, 1192
Hpy188I	TCNGA	5 cut(s)	130, 204, 280, 574, 1002
Hpy188III	TCNNGA	3 cut(s)	104, 521, 1030
Hpy8I	GTNNAC	7 cut(s)	167, 421, 604, 888, 1057, 1141, 1192
Hpy99I	CGWCG	3 cut(s)	959, 1118, 1121
HpyAV	CCTTC	7 cut(s)	161, 463, 533, 569, 758, 775, 821
HpyCH4III	ACNGT	5 cut(s)	63, 307, 892, 1054, 1196
HpyCH4IV	ACGT	4 cut(s)	26, 94, 957, 1113
HpyCH4V	TGCA	4 cut(s)	457, 712, 936, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	736, 942
HpyF3I	CTNAG	5 cut(s)	264, 384, 513, 660, 702
HpySE526I	ACGT	4 cut(s)	26, 94, 957, 1113
Hsp92II	CATG	6 cut(s)	107, 314, 409, 840, 886, 1083
Kpn2I	TCCGGA	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	2 cut(s)	850, 997
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	398, 1096
Lsp1109I	GCAGC	2 cut(s)	726, 772
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	4 cut(s)	26, 94, 957, 1113
MaeIII	GTNAC	4 cut(s)	27, 115, 347, 892
MalI	GATC	2 cut(s)	852, 999
MboI	GATC	2 cut(s)	850, 997
MboII	GAAGA	3 cut(s)	92, 550, 601
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	6 cut(s)	336, 378, 452, 567, 643, 819
MlyI	GAGTC	2 cut(s)	227, 518
MmeI	TCCRAC	2 cut(s)	258, 420
MroI	TCCGGA	1 cut(s)	520
MseI	TTAA	6 cut(s)	642, 776, 822, 960, 1149, 1203
MslI	CAYNNNNRTG	2 cut(s)	881, 993
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	3 cut(s)	293, 521, 789
MspR9I	CCNGG	2 cut(s)	294, 929
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	929
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	736, 942
NciI	CCSGG	1 cut(s)	294
NdeI	CATATG	1 cut(s)	708
NdeII	GATC	2 cut(s)	850, 997
NlaIII	CATG	6 cut(s)	107, 314, 409, 840, 886, 1083
NlaIV	GGNNCC	1 cut(s)	1098
NmuCI	GTSAC	4 cut(s)	27, 115, 347, 892
NspI	RCATGY	2 cut(s)	409, 886
OliI	CACNNNNGTG	1 cut(s)	993
PagI	TCATGA	1 cut(s)	103
PciI	ACATGT	1 cut(s)	882
PciSI	GCTCTTC	1 cut(s)	563
PfeI	GAWTC	2 cut(s)	297, 1074
PflFI	GACNNNGTC	2 cut(s)	25, 1112
PkrI	GCNGC	3 cut(s)	741, 787, 1101
PleI	GAGTC	2 cut(s)	226, 518
PpsI	GAGTC	2 cut(s)	226, 518
PscI	ACATGT	1 cut(s)	882
PshBI	ATTAAT	2 cut(s)	642, 1203
Psp6I	CCWGG	1 cut(s)	927
PspFI	CCCAGC	2 cut(s)	259, 434
PspGI	CCWGG	1 cut(s)	927
PspN4I	GGNNCC	1 cut(s)	1098
PspPI	GGNCC	3 cut(s)	922, 1047, 1121
PsyI	GACNNNGTC	2 cut(s)	25, 1112
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	8 cut(s)	253, 330, 410, 809, 953, 965, 1163, 1178
RsaNI	GTAC	8 cut(s)	252, 329, 409, 808, 952, 964, 1162, 1177
RseI	CAYNNNNRTG	2 cut(s)	881, 993
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	6 cut(s)	642, 776, 822, 960, 1149, 1203
SatI	GCNGC	3 cut(s)	740, 786, 1100
Sau3AI	GATC	2 cut(s)	850, 997
Sau96I	GGNCC	3 cut(s)	922, 1047, 1121
SchI	GAGTC	2 cut(s)	227, 518
ScrFI	CCNGG	2 cut(s)	294, 929
SfcI	CTRYAG	1 cut(s)	676
SinI	GGWCC	2 cut(s)	1047, 1121
SmiMI	CAYNNNNRTG	2 cut(s)	881, 993
Sse9I	AATT	6 cut(s)	336, 378, 452, 567, 643, 819
SsiI	CCGC	2 cut(s)	8, 1100
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	292, 927
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	5 cut(s)	63, 307, 892, 1054, 1196
TaiI	ACGT	4 cut(s)	29, 97, 960, 1116
TaqII	GACCGA	1 cut(s)	1109
TasI	AATT	6 cut(s)	336, 378, 452, 567, 643, 819
TatI	WGTACW	2 cut(s)	963, 1161
TauI	GCSGC	1 cut(s)	1102
TfiI	GAWTC	2 cut(s)	297, 1074
Tru1I	TTAA	6 cut(s)	642, 776, 822, 960, 1149, 1203
Tru9I	TTAA	6 cut(s)	642, 776, 822, 960, 1149, 1203
TscAI	CASTG	2 cut(s)	352, 1057
TseFI	GTSAC	4 cut(s)	27, 115, 347, 892
TseI	GCWGC	2 cut(s)	739, 785
Tsp45I	GTSAC	4 cut(s)	27, 115, 347, 892
TspDTI	ATGAA	4 cut(s)	92, 120, 259, 299
TspRI	CASTG	2 cut(s)	352, 1057
Tth111I	GACNNNGTC	2 cut(s)	25, 1112
VpaK11BI	GGWCC	2 cut(s)	1047, 1121
VspI	ATTAAT	2 cut(s)	642, 1203
XagI	CCTNNNNNAGG	1 cut(s)	676
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	2 cut(s)	409, 886
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.