Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

25454578 .. 25456476

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAAGTTGAGAGAGATCAACACATTTCTCCACCATCTCTTATGGCCAAGACGATCCCTATCATCGATCTAAGCAATCTTGACGAAGAGCTAGTGGCACATGCGGTGGTGAAAGGGAGTGAAGAGTGGGGCATTTTTCACGTGGTTAATCACGGAATCCCGATGGATTTGATACAGCGGTTGAAGGACGTTGGTACACAGTTCTTCGAGCTCCCGGAGACGGAGAAGAAAGCCGTAGCAAAACAAGATGGCTCCAAAGACTTCGAAGGTTACACGACGAATCTCAAGTATGTAAAAGGTGAGGTTTGGACCGAGAATCTTTTTCACAGAATCTGGCCACCGACGTGTATCAATTTTGATTACTGGCCCAAGAATCCTCCTCAATACAGGGAAGTGATTGAGGAGTACACAAAGGAGACTAAGAAGCTATCCGAGAGGATTTTAGGGTATTTATCAGAGGGATTAGGGTTACCAAGTGAGGCCTTGATACAAGGTCTCGGTGGGGAATCGACCGAGTATGTAATGAGGATCAACAATTATCCTCCTGACCCGAAACCTGATTTGACTCTAGGAGTGCCGGAGCACACTGACATCATTGGAATCACAATCATTATCACCAATGAAGTTCCAGGGCTTCAGATTTTCAAGGACGATCATTGGTTAGATGTCCACTACATTCCCTCCTCTATAACCGTCAACATTGGCGATCAGATAATGGCTGAGCAATGGAAAGTACAAGAATGTGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0010033 GO:0016491 GO:0016705 GO:0016706 GO:0042221 GO:0042440 GO:0045431 GO:0046148 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055114 GO:0071704 GO:0080167 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

250

Amino Acids

28.48

Weight (kDa)

4.77

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 114	5.7e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	172 - 239	2e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 178
AclWI	GGATC	2 cut(s)	49, 536
AcoI	YGGCCR	2 cut(s)	45, 335
AcuI	CTGAAG	1 cut(s)	620
AcvI	CACGTG	1 cut(s)	142
AfaI	GTAC	3 cut(s)	196, 407, 735
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	184, 646
AjiI	CACGTC	1 cut(s)	345
AjnI	CCWGG	1 cut(s)	628
AleI	CACNNNNGTG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	91, 211, 427
AluI	AGCT	3 cut(s)	91, 211, 427
Alw21I	GWGCWC	2 cut(s)	213, 585
Alw26I	GTCTC	3 cut(s)	212, 410, 500
AlwI	GGATC	2 cut(s)	49, 536
AlwNI	CAGNNNCTG	1 cut(s)	333
AoxI	GGCC	4 cut(s)	45, 335, 365, 480
AspS9I	GGNCC	2 cut(s)	309, 366
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	121, 311, 607
AsuII	TTCGAA	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	309
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BalI	TGGCCA	2 cut(s)	47, 337
BanII	GRGCYC	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	213, 585
BccI	CCATC	3 cut(s)	43, 157, 242
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	3 cut(s)	212, 410, 500
BfaI	CTAG	2 cut(s)	92, 569
BlpI	GCTNAGC	1 cut(s)	720
Bme1390I	CCNGG	2 cut(s)	215, 630
Bme18I	GGWCC	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	309, 366
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	215, 630
Bpu1102I	GCTNAGC	1 cut(s)	720
Bpu14I	TTCGAA	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	629
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	629
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	3 cut(s)	369, 416, 673
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	4 cut(s)	47, 337, 367, 482
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	2 cut(s)	213, 585
BsiSI	CCGG	2 cut(s)	215, 578
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	212, 410, 500
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	47, 337, 367, 482
Bso31I	GGTCTC	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	213, 585
Bsp143I	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
Bsp1720I	GCTNAGC	1 cut(s)	720
BspACI	CCGC	2 cut(s)	104, 178
BspANI	GGCC	4 cut(s)	47, 337, 367, 482
BspCNI	CTCAG	1 cut(s)	712
BspDI	ATCGAT	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	49, 536
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	731
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	201, 694
Bst6I	CTCTTC	2 cut(s)	81, 117
BstBAI	YACGTR	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	71, 420, 720
BstEII	GGTNACC	1 cut(s)	468
BstKTI	GATC	6 cut(s)	19, 57, 70, 531, 655, 709
BstMAI	GTCTC	3 cut(s)	212, 410, 500
BstMBI	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
BstMCI	CGRYCG	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	468
BstSCI	CCNGG	2 cut(s)	213, 628
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	47, 337, 367, 482
BsuTUI	ATCGAT	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	585
CaiI	CAGNNNCTG	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	309, 366
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	195, 406, 734
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	3 cut(s)	195, 406, 734
DdeI	CTNAG	3 cut(s)	71, 420, 720
DpnI	GATC	6 cut(s)	18, 56, 69, 530, 654, 708
DpnII	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
EaeI	YGGCCR	2 cut(s)	45, 335
Eam1104I	CTCTTC	2 cut(s)	81, 117
EarI	CTCTTC	2 cut(s)	81, 117
Ecl136II	GAGCTC	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	620
Eco72I	CACGTG	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	104
FaiI	YATR	6 cut(s)	44, 102, 291, 519, 689, 751
FatI	CATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	92, 569
HaeIII	GGCC	4 cut(s)	47, 337, 367, 482
HapII	CCGG	2 cut(s)	215, 578
Hin1II	CATG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	8 cut(s)	156, 280, 316, 330, 373, 506, 565, 600
HpaII	CCGG	2 cut(s)	215, 578
HphI	GGTGA	3 cut(s)	121, 311, 607
Hpy166II	GTNNAC	4 cut(s)	197, 408, 670, 697
Hpy188I	TCNGA	4 cut(s)	433, 457, 639, 711
Hpy188III	TCNNGA	3 cut(s)	80, 160, 545
Hpy8I	GTNNAC	4 cut(s)	197, 408, 670, 697
Hpy99I	CGWCG	2 cut(s)	280, 346
HpyAV	CCTTC	2 cut(s)	178, 260
HpyCH4III	ACNGT	2 cut(s)	201, 694
HpyCH4IV	ACGT	3 cut(s)	141, 189, 344
HpyCH4V	TGCA	1 cut(s)	749
HpyF3I	CTNAG	3 cut(s)	71, 420, 720
HpySE526I	ACGT	3 cut(s)	141, 189, 344
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	216, 257, 580
LpnPI	CCDG	9 cut(s)	228, 319, 349, 373, 558, 570, 591, 615, 642
MaeI	CTAG	2 cut(s)	92, 569
MaeII	ACGT	3 cut(s)	141, 189, 344
MaeIII	GTNAC	2 cut(s)	269, 468
MalI	GATC	6 cut(s)	18, 56, 69, 530, 654, 708
MboI	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
MboII	GAAGA	4 cut(s)	98, 134, 196, 238
MhlI	GDGCHC	2 cut(s)	213, 585
MlsI	TGGCCA	2 cut(s)	47, 337
MluCI	AATT	2 cut(s)	352, 535
MluNI	TGGCCA	2 cut(s)	47, 337
MlyI	GAGTC	1 cut(s)	559
Mox20I	TGGCCA	2 cut(s)	47, 337
MscI	TGGCCA	2 cut(s)	47, 337
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	343
Msp20I	TGGCCA	2 cut(s)	47, 337
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	2 cut(s)	215, 578
MspR9I	CCNGG	2 cut(s)	215, 630
MvaI	CCWGG	1 cut(s)	630
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	264
OliI	CACNNNNGTG	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	7 cut(s)	156, 280, 316, 330, 373, 506, 600
PfoI	TCCNGGA	1 cut(s)	213
PleI	GAGTC	1 cut(s)	559
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	628
PspCI	CACGTG	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	309, 366
PstNI	CAGNNNCTG	1 cut(s)	333
RsaI	GTAC	3 cut(s)	196, 407, 735
RsaNI	GTAC	3 cut(s)	195, 406, 734
RseI	CAYNNNNRTG	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	6 cut(s)	16, 54, 67, 528, 652, 706
Sau96I	GGNCC	2 cut(s)	309, 366
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	215, 630
SduI	GDGCHC	2 cut(s)	213, 585
SfuI	TTCGAA	1 cut(s)	264
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	352, 535
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	2 cut(s)	104, 178
SspMI	CTAG	2 cut(s)	92, 569
SstI	GAGCTC	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	213, 628
TaaI	ACNGT	2 cut(s)	201, 694
TaiI	ACGT	3 cut(s)	144, 192, 347
TaqI	TCGA	4 cut(s)	66, 207, 264, 509
TaqII	GACCGA	2 cut(s)	326, 527
TasI	AATT	2 cut(s)	352, 535
TatI	WGTACW	2 cut(s)	405, 733
TfiI	GAWTC	7 cut(s)	156, 280, 316, 330, 373, 506, 600
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	636
TspGWI	ACGGA	2 cut(s)	168, 236
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	309
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	2 cut(s)	92, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.