Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Reverse (-)

21225705 .. 21231806

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGGTAGAAAGAGTGCAAGACATTGCATCTACAATTTCCGAGGACACAATCCCGGCGGAGTACATTAGGTCGGAGAATGAGCAGCCGGGAATCACCACCGTCCCTAACACAGTCCTCGAATGCCCTACCATTGATTTCAGCGACCCTGATGAGGAGAAGCTCCTCAAACAAATCTTCGAGGCCAGCACCGACTGGGGCATGTACCAAATCGTGAACCATGACATTTCCAACGAGGCCATATCCAAGTTACAGGCCGTCGGAAAAGAGTTCTTTGAGCTCCCGCAGGAGGAGAAAGAGGTTTACGCAAAAGATCCCAACTCAAAGTCCGTGGAGGGTTACGGTACATTTTTGCAGAAGGAACTGGAAGGGAAGAAAGGGTGGGTGGATCATCTGTTCCATAAGATTTGGCCACCTTCTACCATTAACTACCGCTTTTGGCCTAAGACTCCAGCTTCTTACAGGGAAGCCAATGAAGAGTATGCAAAGAATTTACACAAGGTGGTGGAGAAGCTATTTAAACTTTTATCTTTGGGGTTAGGGCTTGAAGCACAAGAACTGAAGAAGGCAATTGGTGGTGATGACTTGGTGTACCTTCTCAAAATCAATTACTATCCGCCGTGTCCCCGCCCTGATCTTGCTCTTGGTGTGGTTGCCCATACTGACATGTCCGCCCTCACCATTCTCGTCCCAAACGAAGTTCAGGGCCTCCAAGCTTGCCGCGATGGCCAGTGGTACGATGTCAAGTACATCCCTAATGCCCTAGTCATCCACATTGGTGATCAAATGGAGATAATGAGCAATGGAAAGTACAGGGCTGTGCTGCACAGAACCACAGTGAGCAAAGACAAGACGAGAATCTCCTGGCCTGTGTTTCTGGAACCTCCGGCAGACCAAGTAATAGGGCCTCACCCCAAGCTCGTTAATGATAAGGAGAATCCACCAGAGTACAAGACCAAGAAGTACAGCGAGTATGTTTACAACAAGCTCAACAAGATGCCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

336

Amino Acids

38.23

Weight (kDa)

5.41

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 149	3.7e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 295	9.4e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	723
AciI	CCGC	7 cut(s)	59, 284, 433, 617, 628, 672, 721
AclWI	GGATC	2 cut(s)	308, 396
AcoI	YGGCCR	2 cut(s)	410, 727
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	581
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	9 cut(s)	65, 206, 346, 593, 737, 749, 812, 950, 965
AfiI	CCNNNNNNNGG	2 cut(s)	154, 289
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	863
AleI	CACNNNNGTG	1 cut(s)	777
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	7 cut(s)	163, 280, 455, 514, 716, 919, 988
AluI	AGCT	7 cut(s)	163, 280, 455, 514, 716, 919, 988
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	2 cut(s)	308, 396
AoxI	GGCC	9 cut(s)	183, 237, 255, 410, 440, 706, 727, 866, 905
ApeKI	GCWGC	2 cut(s)	85, 823
ApoI	RAATTY	1 cut(s)	490
AspS9I	GGNCC	2 cut(s)	706, 905
AsuC2I	CCSGG	2 cut(s)	56, 90
AsuHPI	GGTGA	5 cut(s)	88, 590, 670, 791, 902
BalI	TGGCCA	2 cut(s)	412, 729
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	97, 810
BccI	CCATC	1 cut(s)	719
BceAI	ACGGC	2 cut(s)	242, 604
BciT130I	CCWGG	1 cut(s)	865
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	2 cut(s)	56, 90
BfaI	CTAG	1 cut(s)	764
BglI	GCCNNNNNGGC	1 cut(s)	726
BisI	GCNGC	3 cut(s)	86, 721, 824
BlsI	GCNGC	3 cut(s)	87, 722, 825
Bme1390I	CCNGG	3 cut(s)	56, 90, 865
BmgT120I	GGNCC	2 cut(s)	706, 905
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	3 cut(s)	56, 90, 865
BmrI	ACTGGG	2 cut(s)	205, 997
BmsI	GCATC	2 cut(s)	38, 987
BmuI	ACTGGG	2 cut(s)	205, 997
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	56, 90
BsaJI	CCNNGG	2 cut(s)	42, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 289
Bse1I	ACTGG	4 cut(s)	200, 369, 730, 1003
Bse3DI	GCAATG	2 cut(s)	24, 808
BseBI	CCWGG	1 cut(s)	865
BseDI	CCNNGG	2 cut(s)	42, 330
BseGI	GGATG	2 cut(s)	750, 768
BseLI	CCNNNNNNNGG	2 cut(s)	154, 289
BseMI	GCAATG	2 cut(s)	24, 808
BseNI	ACTGG	4 cut(s)	200, 369, 730, 1003
BseRI	GAGGAG	3 cut(s)	155, 170, 305
BseXI	GCAGC	2 cut(s)	97, 810
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	1 cut(s)	723
BshFI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	56, 89, 887
BslFI	GGGAC	3 cut(s)	89, 609, 674
BslI	CCNNNNNNNGG	2 cut(s)	154, 289
BsmFI	GGGAC	3 cut(s)	89, 609, 674
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	313, 388, 634, 781
BspACI	CCGC	7 cut(s)	59, 284, 433, 617, 628, 672, 721
BspANI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
BspFNI	CGCG	1 cut(s)	723
BspLI	GGNNCC	1 cut(s)	882
BspPI	GGATC	2 cut(s)	308, 396
BsrDI	GCAATG	2 cut(s)	24, 808
BsrI	ACTGG	4 cut(s)	200, 369, 730, 1003
BssECI	CCNNGG	2 cut(s)	42, 330
BssMI	GATC	4 cut(s)	313, 388, 634, 781
Bst2UI	CCWGG	1 cut(s)	865
Bst4CI	ACNGT	4 cut(s)	103, 115, 344, 838
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	187, 718
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	750, 768
BstFNI	CGCG	1 cut(s)	723
BstKTI	GATC	4 cut(s)	316, 391, 637, 784
BstMBI	GATC	4 cut(s)	313, 388, 634, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	726
BstNI	CCWGG	1 cut(s)	865
BstNSI	RCATGY	2 cut(s)	205, 670
BstSCI	CCNGG	3 cut(s)	54, 88, 863
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	2 cut(s)	97, 810
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
BtgI	CCRYGG	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	750, 768
BtsIMutI	CAGTG	2 cut(s)	737, 843
Cac8I	GCNNGC	2 cut(s)	187, 718
Cfr13I	GGNCC	2 cut(s)	706, 905
Csp6I	GTAC	9 cut(s)	64, 205, 345, 592, 736, 748, 811, 949, 964
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	3 cut(s)	202, 221, 667
CviQI	GTAC	9 cut(s)	64, 205, 345, 592, 736, 748, 811, 949, 964
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	4 cut(s)	315, 390, 636, 783
DpnII	GATC	4 cut(s)	313, 388, 634, 781
DraI	TTTAAA	1 cut(s)	520
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	2 cut(s)	410, 727
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	3 cut(s)	74, 606, 661
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	2 cut(s)	706, 905
EcoRII	CCWGG	1 cut(s)	863
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	3 cut(s)	205, 224, 670
FaiI	YATR	8 cut(s)	203, 222, 242, 402, 483, 660, 668, 975
FaqI	GGGAC	3 cut(s)	89, 609, 674
FatI	CATG	3 cut(s)	201, 220, 666
FauI	CCCGC	2 cut(s)	291, 635
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	86, 721, 824
FokI	GGATG	2 cut(s)	737, 755
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	86, 721, 824
FspBI	CTAG	1 cut(s)	764
GluI	GCNGC	3 cut(s)	86, 721, 824
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
HapII	CCGG	3 cut(s)	56, 89, 887
Hin1II	CATG	3 cut(s)	205, 224, 670
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	4 cut(s)	93, 448, 858, 937
HpaII	CCGG	3 cut(s)	56, 89, 887
HphI	GGTGA	5 cut(s)	88, 590, 670, 791, 902
Hpy166II	GTNNAC	4 cut(s)	217, 304, 592, 979
Hpy188I	TCNGA	3 cut(s)	43, 76, 263
Hpy188III	TCNNGA	2 cut(s)	214, 878
Hpy8I	GTNNAC	4 cut(s)	217, 304, 592, 979
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	5 cut(s)	352, 362, 426, 559, 605
HpyCH4III	ACNGT	4 cut(s)	103, 115, 344, 838
HpyCH4V	TGCA	5 cut(s)	19, 29, 355, 485, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	726
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	205, 224, 670
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	313, 388, 634, 781
LmnI	GCTCC	2 cut(s)	168, 285
Lsp1109I	GCAGC	2 cut(s)	97, 810
LweI	GCATC	2 cut(s)	38, 987
MaeI	CTAG	1 cut(s)	764
MaeIII	GTNAC	2 cut(s)	249, 338
MalI	GATC	4 cut(s)	315, 390, 636, 783
MboI	GATC	4 cut(s)	313, 388, 634, 781
MboII	GAAGA	4 cut(s)	169, 385, 488, 574
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	2 cut(s)	412, 729
MluCI	AATT	4 cut(s)	36, 490, 570, 607
MluNI	TGGCCA	2 cut(s)	412, 729
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	3 cut(s)	54, 241, 255
Mox20I	TGGCCA	2 cut(s)	412, 729
MscI	TGGCCA	2 cut(s)	412, 729
MseI	TTAA	3 cut(s)	426, 519, 924
MslI	CAYNNNNRTG	1 cut(s)	777
Msp20I	TGGCCA	2 cut(s)	412, 729
MspI	CCGG	3 cut(s)	56, 89, 887
MspR9I	CCNGG	3 cut(s)	56, 90, 865
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	865
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	1 cut(s)	726
NciI	CCSGG	2 cut(s)	56, 90
NdeII	GATC	4 cut(s)	313, 388, 634, 781
NlaIII	CATG	3 cut(s)	205, 224, 670
NlaIV	GGNNCC	1 cut(s)	882
NspI	RCATGY	2 cut(s)	205, 670
OliI	CACNNNNGTG	1 cut(s)	777
PciI	ACATGT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	93, 858, 937
PkrI	GCNGC	3 cut(s)	87, 722, 825
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PscI	ACATGT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	863
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	2 cut(s)	706, 905
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	9 cut(s)	65, 206, 346, 593, 737, 749, 812, 950, 965
RsaNI	GTAC	9 cut(s)	64, 205, 345, 592, 736, 748, 811, 949, 964
RseI	CAYNNNNRTG	1 cut(s)	777
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	426, 519, 924
SatI	GCNGC	3 cut(s)	86, 721, 824
Sau3AI	GATC	4 cut(s)	313, 388, 634, 781
Sau96I	GGNCC	2 cut(s)	706, 905
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	3 cut(s)	56, 90, 865
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	38, 987
SmiMI	CAYNNNNRTG	1 cut(s)	777
Sse9I	AATT	4 cut(s)	36, 490, 570, 607
SsiI	CCGC	7 cut(s)	59, 284, 433, 617, 628, 672, 721
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	3 cut(s)	54, 88, 863
TaaI	ACNGT	4 cut(s)	103, 115, 344, 838
TaqI	TCGA	2 cut(s)	120, 180
TasI	AATT	4 cut(s)	36, 490, 570, 607
TatI	WGTACW	5 cut(s)	63, 747, 810, 948, 963
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	3 cut(s)	93, 858, 937
Tru1I	TTAA	3 cut(s)	426, 519, 924
Tru9I	TTAA	3 cut(s)	426, 519, 924
TscAI	CASTG	2 cut(s)	737, 843
TseI	GCWGC	2 cut(s)	85, 823
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	2 cut(s)	737, 843
XapI	RAATTY	1 cut(s)	490
XceI	RCATGY	2 cut(s)	205, 670
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.