Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

41577480 .. 41579444

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G502700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCAGTCGGAGGCTGAGAGAGTGCAAGACATTGCTTTAATGTCCAAAGCCAACATCCCAATCGAGTTCATTAGGTCAGAGCATGAGCAACCAGGGATCACAACCGTCCATGGGAAAGTCCTGGAGTGCCCAACCATCGATTTCAGCAACCAAGATGACGAAGAGATCCTGAACCAAATTGTAGAGGCTAGCAGGAATTGGGGAATGTACCAGATTGTGAACCATGACATTCCGAATGAGGCCATAAGCAAATTGCAAGCTGTTGGGAAGGCATTTTTTGAGCTTCCACCAGAGGAGAAAGAGGTTTATGCGAAGCCTCCAGATTCTAAGTCTGTGGAAGGGTACGGGACGAAGCTTCAGAAGGAATTGGAAGGCAAGAAAGGATGGGTGGACCATTTGTTCCATAGGGTTTGGCCTCCTTCTGCCATTAACTACCAGTTCTGGCCTAAGAACCCACCTTCTTACAGGGAAGCTAATGAAGAGTATGTGAAGCATCTGCACAAGGTGGTGGACAAGTTGTTCAAGGTGCTCTCTTTAGGGTTAGGGCTTGAAGGACAAGAGTTGAAGAAGGCTGCTGGAGGAGATGACATGGTTTATCTTCTGAAAATTAATTATTACCCTCCATGTCCCCGCCCTGACCTTGCTCTTGGAGTGGTGGCCCACACTGACATGTCTGCCCTAACCATACTTGTCCCAAACGATGTCCAGGGCCTACAGGCTTGCAGAGATGGCCAATGGTACGATGTGAGGTACATCCCTAATGCCCTGGTCATCCACATTGGTGATCAGATGGAGATTATGAGCAATGGAAAGTACAAGAGTGTCCTCCATAGAAGCACTGTGAATAAAGAGAAGACGAGACTCTCGTGGCCGGTTTTCATTGAGCCTCCACAAGACCGCGTAGTTGGCCCTCTCCCACAGCTTGTGAAGGAGGACAATCCACCTAAATACAAAGCCAAGAAGTTCGGAGATTATTGTTATTGCAAGCTCAACAAGATTCCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

336

Amino Acids

38.18

Weight (kDa)

6.23

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	900
AciI	CCGC	2 cut(s)	631, 898
AclWI	GGATC	2 cut(s)	104, 160
AcoI	YGGCCR	2 cut(s)	730, 869
AcuI	CTGAAG	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	5 cut(s)	209, 344, 740, 752, 815
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	3 cut(s)	523, 551, 565
AjnI	CCWGG	4 cut(s)	91, 120, 705, 765
AleI	CACNNNNGTG	1 cut(s)	780
AloI	GAACNNNNNNTCC	4 cut(s)	383, 415, 503, 535
AluBI	AGCT	6 cut(s)	260, 283, 355, 473, 922, 988
AluI	AGCT	6 cut(s)	260, 283, 355, 473, 922, 988
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	2 cut(s)	104, 160
AoxI	GGCC	8 cut(s)	240, 413, 443, 657, 709, 730, 869, 907
ApeKI	GCWGC	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	609
AspS9I	GGNCC	4 cut(s)	391, 658, 709, 908
AsuHPI	GGTGA	1 cut(s)	794
AsuNHI	GCTAGC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	732
BauI	CACGAG	1 cut(s)	865
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	4 cut(s)	143, 378, 722, 784
BciT130I	CCWGG	4 cut(s)	93, 122, 707, 767
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	713
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	4 cut(s)	93, 122, 707, 767
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	4 cut(s)	391, 658, 709, 908
BmrFI	CCNGG	4 cut(s)	93, 122, 707, 767
BmrI	ACTGGG	1 cut(s)	997
BmsI	GCATC	1 cut(s)	502
BmtI	GCTAGC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	997
BpiI	GAAGAC	1 cut(s)	860
BpmI	CTGGAG	3 cut(s)	143, 303, 597
Bsa29I	ATCGAT	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	92, 109, 706, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	871
Bse1I	ACTGG	2 cut(s)	436, 1003
Bse3DI	GCAATG	2 cut(s)	30, 811
BseBI	CCWGG	4 cut(s)	93, 122, 707, 767
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	4 cut(s)	92, 109, 706, 765
BseGI	GGATG	4 cut(s)	54, 389, 753, 771
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	30, 811
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	436, 1003
BseRI	GAGGAG	2 cut(s)	308, 594
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	900
BshFI	GGCC	8 cut(s)	242, 415, 445, 659, 711, 732, 871, 909
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	3 cut(s)	361, 612, 677
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	853
BsmFI	GGGAC	3 cut(s)	361, 612, 677
BsnI	GGCC	8 cut(s)	242, 415, 445, 659, 711, 732, 871, 909
Bsp1286I	GDGCHC	2 cut(s)	131, 531
Bsp143I	GATC	3 cut(s)	96, 165, 784
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	2 cut(s)	631, 898
BspANI	GGCC	8 cut(s)	242, 415, 445, 659, 711, 732, 871, 909
BspCNI	CTCAG	1 cut(s)	7
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	900
BspOI	GCTAGC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	104, 160
BsrDI	GCAATG	2 cut(s)	30, 811
BsrFI	RCCGGY	1 cut(s)	871
BsrI	ACTGG	2 cut(s)	436, 1003
BssAI	RCCGGY	1 cut(s)	871
BssECI	CCNNGG	4 cut(s)	92, 109, 706, 765
BssMI	GATC	3 cut(s)	96, 165, 784
BssSI	CACGAG	1 cut(s)	865
BssT1I	CCWWGG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	865
Bst2UI	CCWGG	4 cut(s)	93, 122, 707, 767
Bst4CI	ACNGT	2 cut(s)	106, 841
Bst6I	CTCTTC	2 cut(s)	156, 474
BstC8I	GCNNGC	4 cut(s)	190, 258, 721, 986
BstDEI	CTNAG	3 cut(s)	15, 327, 447
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	4 cut(s)	54, 389, 753, 771
BstFNI	CGCG	1 cut(s)	900
BstKTI	GATC	3 cut(s)	99, 168, 787
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	3 cut(s)	96, 165, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	729, 906
BstNI	CCWGG	4 cut(s)	93, 122, 707, 767
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	4 cut(s)	91, 120, 705, 765
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	1 cut(s)	900
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	8 cut(s)	242, 415, 445, 659, 711, 732, 871, 909
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	54, 389, 753, 771
BtsIMutI	CAGTG	2 cut(s)	663, 837
Cac8I	GCNNGC	4 cut(s)	190, 258, 721, 986
Cfr10I	RCCGGY	1 cut(s)	871
Cfr13I	GGNCC	4 cut(s)	391, 658, 709, 908
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	5 cut(s)	208, 343, 739, 751, 814
CviAII	CATG	6 cut(s)	83, 110, 224, 589, 624, 670
CviQI	GTAC	5 cut(s)	208, 343, 739, 751, 814
DdeI	CTNAG	3 cut(s)	15, 327, 447
DpnI	GATC	3 cut(s)	98, 167, 786
DpnII	GATC	3 cut(s)	96, 165, 784
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	730, 869
Eam1104I	CTCTTC	2 cut(s)	156, 474
EarI	CTCTTC	2 cut(s)	156, 474
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRII	CCWGG	4 cut(s)	91, 120, 705, 765
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	6 cut(s)	86, 113, 227, 592, 627, 673
FaqI	GGGAC	3 cut(s)	361, 612, 677
FatI	CATG	6 cut(s)	82, 109, 223, 588, 623, 669
FauI	CCCGC	1 cut(s)	638
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	4 cut(s)	41, 396, 740, 758
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	573
GsuI	CTGGAG	3 cut(s)	143, 303, 597
HaeIII	GGCC	8 cut(s)	242, 415, 445, 659, 711, 732, 871, 909
HapII	CCGG	1 cut(s)	872
Hin1II	CATG	6 cut(s)	86, 113, 227, 592, 627, 673
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	323, 861, 997
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	3 cut(s)	220, 391, 511
Hpy188I	TCNGA	7 cut(s)	10, 79, 234, 360, 603, 789, 968
Hpy188III	TCNNGA	2 cut(s)	169, 320
Hpy8I	GTNNAC	3 cut(s)	220, 391, 511
HpyAV	CCTTC	9 cut(s)	262, 332, 355, 365, 429, 468, 545, 562, 922
HpyCH4III	ACNGT	2 cut(s)	106, 841
HpyCH4V	TGCA	6 cut(s)	4, 25, 256, 499, 723, 984
HpyF10VI	GCNNNNNNNGC	2 cut(s)	729, 906
HpyF3I	CTNAG	3 cut(s)	15, 327, 447
Hsp92II	CATG	6 cut(s)	86, 113, 227, 592, 627, 673
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	96, 165, 784
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	189
MalI	GATC	3 cut(s)	98, 167, 786
MboI	GATC	3 cut(s)	96, 165, 784
MboII	GAAGA	5 cut(s)	173, 491, 577, 590, 865
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	131, 531
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	6 cut(s)	177, 196, 251, 365, 606, 610
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	855
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	3 cut(s)	38, 429, 609
MslI	CAYNNNNRTG	2 cut(s)	668, 780
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	4 cut(s)	93, 122, 707, 767
MvaI	CCWGG	4 cut(s)	93, 122, 707, 767
MvnI	CGCG	1 cut(s)	900
MwoI	GCNNNNNNNGC	2 cut(s)	729, 906
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	3 cut(s)	96, 165, 784
NheI	GCTAGC	1 cut(s)	188
NlaIII	CATG	6 cut(s)	86, 113, 227, 592, 627, 673
NspI	RCATGY	1 cut(s)	673
OliI	CACNNNNGTG	1 cut(s)	780
PciI	ACATGT	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	863
PfeI	GAWTC	2 cut(s)	323, 997
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	1 cut(s)	855
PpsI	GAGTC	1 cut(s)	855
PscI	ACATGT	1 cut(s)	669
PshBI	ATTAAT	1 cut(s)	609
Psp6I	CCWGG	4 cut(s)	91, 120, 705, 765
PspGI	CCWGG	4 cut(s)	91, 120, 705, 765
PspPI	GGNCC	4 cut(s)	391, 658, 709, 908
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	5 cut(s)	209, 344, 740, 752, 815
RsaNI	GTAC	5 cut(s)	208, 343, 739, 751, 814
RseI	CAYNNNNRTG	2 cut(s)	668, 780
SaqAI	TTAA	3 cut(s)	38, 429, 609
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	3 cut(s)	96, 165, 784
Sau96I	GGNCC	4 cut(s)	391, 658, 709, 908
SchI	GAGTC	1 cut(s)	855
ScrFI	CCNGG	4 cut(s)	93, 122, 707, 767
SduI	GDGCHC	2 cut(s)	131, 531
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	713
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	668, 780
Sse9I	AATT	6 cut(s)	177, 196, 251, 365, 606, 610
SsiI	CCGC	2 cut(s)	631, 898
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	4 cut(s)	91, 120, 705, 765
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	106, 841
TaqI	TCGA	2 cut(s)	63, 138
TasI	AATT	6 cut(s)	177, 196, 251, 365, 606, 610
TatI	WGTACW	1 cut(s)	813
TfiI	GAWTC	2 cut(s)	323, 997
Tru1I	TTAA	3 cut(s)	38, 429, 609
Tru9I	TTAA	3 cut(s)	38, 429, 609
TscAI	CASTG	2 cut(s)	670, 844
TseI	GCWGC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	58, 492, 868
TspRI	CASTG	2 cut(s)	670, 844
VpaK11BI	GGWCC	1 cut(s)	391
VspI	ATTAAT	1 cut(s)	609
XceI	RCATGY	1 cut(s)	673
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.