Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Forward (+)

3509833 .. 3513741

Gene Structure 3909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACATCAGCCTCCTCCTCCGCCGCAACAGCAGCAGCAACAACATTTTCAAGAATCAGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGCCTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTCACGATCCTCATCCTTCCTCCAACGAGGCAACACCGCAAACAACAACAACAACGAAACATCCGGTGACGTCATCGAAGACGTTCCCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAAGGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATACGAGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTTAGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGTACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCAATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGTATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCACTGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCAGGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTGGCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAAACAGATAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTCTTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

393

Amino Acids

44.38

Weight (kDa)

5.87

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	124 - 164	1.1e-18	KNOX1 domain
KNOX2	PF03791	182 - 231	2.2e-18	KNOX2 domain
ELK	PF03789	286 - 307	6.6e-07	ELK domain
Homeobox_KN	PF05920	326 - 365	8.4e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1145
AatII	GACGTC	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	1145
AccBSI	CCGCTC	2 cut(s)	126, 527
AclWI	GGATC	3 cut(s)	219, 443, 459
AcvI	CACGTG	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	509, 585
AfiI	CCNNNNNNNGG	3 cut(s)	114, 710, 1012
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	4 cut(s)	95, 604, 671, 683
AjnI	CCWGG	2 cut(s)	703, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	1081, 1113
AluBI	AGCT	9 cut(s)	158, 180, 457, 478, 559, 647, 783, 935, 1054
AluI	AGCT	9 cut(s)	158, 180, 457, 478, 559, 647, 783, 935, 1054
Alw26I	GTCTC	7 cut(s)	358, 390, 492, 945, 1034, 1132, 1167
AlwI	GGATC	3 cut(s)	219, 443, 459
AoxI	GGCC	2 cut(s)	654, 998
ApeKI	GCWGC	4 cut(s)	76, 79, 158, 1051
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	803
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	4 cut(s)	25, 296, 719, 1169
AvaII	GGWCC	1 cut(s)	803
AxyI	CCTNAGG	1 cut(s)	431
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BbrPI	CACGTG	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	4 cut(s)	88, 91, 145, 1063
BccI	CCATC	4 cut(s)	770, 782, 832, 1120
BcgI	CGANNNNNNTGC	2 cut(s)	1015, 1049
BciT130I	CCWGG	2 cut(s)	705, 948
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	7 cut(s)	358, 390, 492, 945, 1034, 1132, 1167
BfaI	CTAG	1 cut(s)	809
BfuAI	ACCTGC	1 cut(s)	1145
BglII	AGATCT	1 cut(s)	830
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	3 cut(s)	306, 705, 948
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	3 cut(s)	306, 705, 948
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpuEI	CTTGAG	2 cut(s)	513, 857
BpuMI	CCSGG	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	1167
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 710, 1012
Bse118I	RCCGGY	2 cut(s)	445, 542
Bse1I	ACTGG	1 cut(s)	211
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	645, 1156
Bse8I	GATNNNNATC	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	705, 948
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	4 cut(s)	230, 278, 388, 742
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	114, 710, 1012
BseMI	GCAATG	2 cut(s)	645, 1156
BseMII	CTCAG	6 cut(s)	422, 497, 723, 810, 911, 1002
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	6 cut(s)	48, 51, 110, 329, 527, 926
BseXI	GCAGC	4 cut(s)	88, 91, 145, 1063
BsgI	GTGCAG	1 cut(s)	1055
BshFI	GGCC	2 cut(s)	656, 1000
BsiSI	CCGG	4 cut(s)	282, 306, 446, 543
BslI	CCNNNNNNNGG	3 cut(s)	114, 710, 1012
BsmAI	GTCTC	7 cut(s)	358, 390, 492, 945, 1034, 1132, 1167
BsmBI	CGTCTC	2 cut(s)	1034, 1132
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	656, 1000
Bso31I	GGTCTC	1 cut(s)	1167
Bsp143I	GATC	5 cut(s)	224, 324, 435, 451, 830
BspANI	GGCC	2 cut(s)	656, 1000
BspCNI	CTCAG	6 cut(s)	423, 496, 724, 811, 912, 1003
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	1145
BspPI	GGATC	3 cut(s)	219, 443, 459
BspQI	GCTCTTC	1 cut(s)	925
BspTNI	GGTCTC	1 cut(s)	1167
BsrBI	CCGCTC	2 cut(s)	126, 527
BsrDI	GCAATG	2 cut(s)	645, 1156
BsrFI	RCCGGY	2 cut(s)	445, 542
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	2 cut(s)	445, 542
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	5 cut(s)	224, 324, 435, 451, 830
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	705, 948
Bst4CI	ACNGT	4 cut(s)	384, 675, 1126, 1178
Bst6I	CTCTTC	3 cut(s)	920, 925, 1165
BstACI	GRCGYC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	427, 480, 544
BstDEI	CTNAG	9 cut(s)	431, 483, 504, 732, 784, 819, 920, 993, 1011
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	4 cut(s)	230, 278, 388, 742
BstKTI	GATC	5 cut(s)	227, 327, 438, 454, 833
BstMAI	GTCTC	7 cut(s)	358, 390, 492, 945, 1034, 1132, 1167
BstMBI	GATC	5 cut(s)	224, 324, 435, 451, 830
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 76, 164, 167, 422, 479, 644, 653
BstNI	CCWGG	2 cut(s)	705, 948
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	304, 703, 946
BstV1I	GCAGC	4 cut(s)	88, 91, 145, 1063
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
Bsu36I	CCTNAGG	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	656, 1000
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	4 cut(s)	230, 278, 388, 742
BtsIMutI	CAGTG	2 cut(s)	218, 816
BveI	ACCTGC	1 cut(s)	1145
Cac8I	GCNNGC	3 cut(s)	427, 480, 544
CciI	TCATGA	1 cut(s)	570
Cfr10I	RCCGGY	2 cut(s)	445, 542
Cfr13I	GGNCC	1 cut(s)	803
CseI	GACGC	2 cut(s)	479, 583
Csp6I	GTAC	2 cut(s)	508, 584
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	5 cut(s)	571, 623, 635, 866, 975
CviQI	GTAC	2 cut(s)	508, 584
DdeI	CTNAG	9 cut(s)	431, 483, 504, 732, 784, 819, 920, 993, 1011
DpnI	GATC	5 cut(s)	226, 326, 437, 453, 832
DpnII	GATC	5 cut(s)	224, 324, 435, 451, 830
Eam1104I	CTCTTC	3 cut(s)	920, 925, 1165
EarI	CTCTTC	3 cut(s)	920, 925, 1165
EciI	GGCGGA	5 cut(s)	54, 187, 324, 359, 389
Eco31I	GGTCTC	1 cut(s)	1167
Eco47I	GGWCC	1 cut(s)	803
Eco72I	CACGTG	1 cut(s)	421
Eco81I	CCTNAGG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	703, 946
Esp3I	CGTCTC	2 cut(s)	1034, 1132
FaeI	CATG	5 cut(s)	574, 626, 638, 869, 978
FatI	CATG	5 cut(s)	570, 622, 634, 865, 974
FokI	GGATG	4 cut(s)	217, 265, 375, 749
FspBI	CTAG	1 cut(s)	809
HaeIII	GGCC	2 cut(s)	656, 1000
HapII	CCGG	4 cut(s)	282, 306, 446, 543
HgaI	GACGC	2 cut(s)	479, 583
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	574, 626, 638, 869, 978
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	5 cut(s)	98, 185, 317, 534, 846
HpaII	CCGG	4 cut(s)	282, 306, 446, 543
HphI	GGTGA	4 cut(s)	25, 296, 719, 1169
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188I	TCNGA	6 cut(s)	130, 184, 329, 462, 733, 851
Hpy188III	TCNNGA	3 cut(s)	95, 222, 571
Hpy8I	GTNNAC	1 cut(s)	901
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	4 cut(s)	201, 244, 331, 704
HpyCH4III	ACNGT	4 cut(s)	384, 675, 1126, 1178
HpyCH4IV	ACGT	4 cut(s)	288, 300, 420, 495
HpyCH4V	TGCA	5 cut(s)	616, 638, 1036, 1051, 1154
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 76, 164, 167, 422, 479, 644, 653
HpyF3I	CTNAG	9 cut(s)	431, 483, 504, 732, 784, 819, 920, 993, 1011
HpySE526I	ACGT	4 cut(s)	288, 300, 420, 495
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	574, 626, 638, 869, 978
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
Kzo9I	GATC	5 cut(s)	224, 324, 435, 451, 830
LguI	GCTCTTC	1 cut(s)	925
LmnI	GCTCC	5 cut(s)	123, 131, 185, 556, 719
Lsp1109I	GCAGC	4 cut(s)	88, 91, 145, 1063
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	4 cut(s)	288, 300, 420, 495
MaeIII	GTNAC	2 cut(s)	284, 881
MalI	GATC	5 cut(s)	226, 326, 437, 453, 832
MbiI	CCGCTC	2 cut(s)	126, 527
MboI	GATC	5 cut(s)	224, 324, 435, 451, 830
MfeI	CAATTG	1 cut(s)	1069
MflI	RGATCY	1 cut(s)	830
MluCI	AATT	5 cut(s)	112, 894, 941, 1069, 1096
MlyI	GAGTC	3 cut(s)	326, 528, 855
MmeI	TCCRAC	2 cut(s)	153, 265
MreI	CGCCGGCG	1 cut(s)	542
MroNI	GCCGGC	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	2 cut(s)	158, 1167
MspI	CCGG	4 cut(s)	282, 306, 446, 543
MspR9I	CCNGG	3 cut(s)	306, 705, 948
MunI	CAATTG	1 cut(s)	1069
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	705, 948
MwoI	GCNNNNNNNGC	8 cut(s)	73, 76, 164, 167, 422, 479, 644, 653
NaeI	GCCGGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	224, 324, 435, 451, 830
NgoMIV	GCCGGC	1 cut(s)	542
NlaIII	CATG	5 cut(s)	574, 626, 638, 869, 978
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	626
PagI	TCATGA	1 cut(s)	570
PaqCI	CACCTGC	1 cut(s)	1145
PciSI	GCTCTTC	1 cut(s)	925
PctI	GAATGC	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	98, 185
PleI	GAGTC	3 cut(s)	325, 528, 854
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
PpsI	GAGTC	3 cut(s)	325, 528, 854
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	703, 946
PspCI	CACGTG	1 cut(s)	421
PspGI	CCWGG	2 cut(s)	703, 946
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	803
PsuI	RGATCY	1 cut(s)	830
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	509, 585
RsaNI	GTAC	2 cut(s)	508, 584
RseI	CAYNNNNRTG	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	925
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	224, 324, 435, 451, 830
Sau96I	GGNCC	1 cut(s)	803
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	3 cut(s)	326, 528, 855
ScrFI	CCNGG	3 cut(s)	306, 705, 948
SfaNI	GCATC	1 cut(s)	751
SgrAI	CRCCGGYG	2 cut(s)	445, 542
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	528, 872
SmoI	CTYRAG	2 cut(s)	528, 872
Sse9I	AATT	5 cut(s)	112, 894, 941, 1069, 1096
SspMI	CTAG	1 cut(s)	809
StyD4I	CCNGG	3 cut(s)	304, 703, 946
TaaI	ACNGT	4 cut(s)	384, 675, 1126, 1178
TaiI	ACGT	4 cut(s)	291, 303, 423, 498
TaqI	TCGA	1 cut(s)	294
TasI	AATT	5 cut(s)	112, 894, 941, 1069, 1096
TatI	WGTACW	2 cut(s)	507, 583
TauI	GCSGC	6 cut(s)	70, 170, 173, 203, 206, 527
TfiI	GAWTC	2 cut(s)	98, 185
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	218, 823
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	76, 79, 158, 1051
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	559, 623, 753, 882, 1066
TspRI	CASTG	2 cut(s)	218, 823
VpaK11BI	GGWCC	1 cut(s)	803
XagI	CCTNNNNNAGG	1 cut(s)	708
XceI	RCATGY	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	809
ZraI	GACGTC	1 cut(s)	289
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.