Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013249.1

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1647

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

aggcactatgttttgttgctatgttcttttaaagaacaactgcaacaacacgtccgtgtccatgcaatggaagcagtgatggcttgctgggagattgagcaatcactacagagcctgacaggagtttcccccggggagggtacgggagctacaatgtccgatgatgatgatgagcaagtagacagtgatgcaaacttgtttgatggaagtatggacggccatgacagtatgggatttggccctctcatcccgacagagagcgaaaggtccttgatggagcgcgtaaggcaggagttgaagcatgaactgaaacagggttacaaggagaaaattgtagacataagggaggagatattgcgcaagagaagagctggaaagcttcctggtgacaccacctctgtcctgaaagcttggtggcaatcacattccaagtggccatatccaactgaggaagacaaggctaggttggtgcaagaaactggtttgcaattgaagcagataaacaattggttcatcaatcaaaggaagaggaactggcacagcaatccttcaacctccacggttttgaagagcaagcgcaaaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

195

Amino Acids

22.55

Weight (kDa)

7.23

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccI	GTMKAC	2 cut(s)	180, 336
AccII	CGCG	1 cut(s)	282
AcoI	YGGCCR	2 cut(s)	217, 434
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	67, 136, 137
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	298, 493, 552, 568
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	382
AleI	CACNNNNGTG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	149, 371, 379, 410
AluI	AGCT	4 cut(s)	149, 371, 379, 410
AlwNI	CAGNNNCTG	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	3 cut(s)	217, 238, 434
AspLEI	GCGC	3 cut(s)	282, 360, 579
AspS9I	GGNCC	2 cut(s)	239, 267
AsuC2I	CCSGG	2 cut(s)	132, 133
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	459
BccI	CCATC	3 cut(s)	73, 197, 268
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	132, 133
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	132, 133, 384
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	239, 267
BmrFI	CCNGG	3 cut(s)	132, 133, 384
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	459
BpuMI	CCSGG	2 cut(s)	132, 133
BsaJI	CCNNGG	4 cut(s)	130, 131, 132, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 136, 137
Bse1I	ACTGG	2 cut(s)	484, 539
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	4 cut(s)	130, 131, 132, 558
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	3 cut(s)	67, 136, 137
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	484, 539
BseRI	GAGGAG	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	219, 240, 436
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	3 cut(s)	67, 136, 137
BsnI	GGCC	3 cut(s)	219, 240, 436
BsoBI	CYCGRG	1 cut(s)	131
BspANI	GGCC	3 cut(s)	219, 240, 436
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	282
BspQI	GCTCTTC	2 cut(s)	361, 563
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	484, 539
BssECI	CCNNGG	4 cut(s)	130, 131, 132, 558
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	185, 227, 562
Bst6I	CTCTTC	3 cut(s)	361, 521, 563
BstC8I	GCNNGC	2 cut(s)	85, 575
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	3 cut(s)	282, 360, 579
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 80, 286, 493
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	130, 131, 382
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	459
BsuRI	GGCC	3 cut(s)	219, 240, 436
BtgI	CCRYGG	1 cut(s)	558
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 190
Cac8I	GCNNGC	2 cut(s)	85, 575
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	3 cut(s)	282, 360, 579
Cfr13I	GGNCC	2 cut(s)	239, 267
Cfr9I	CCCGGG	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	3 cut(s)	62, 221, 302
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	447
DraI	TTTAAA	1 cut(s)	31
EaeI	YGGCCR	2 cut(s)	217, 434
Eam1104I	CTCTTC	3 cut(s)	361, 521, 563
EarI	CTCTTC	3 cut(s)	361, 521, 563
Eco47I	GGWCC	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	65, 224, 305
FaiI	YATR	9 cut(s)	9, 22, 63, 212, 222, 230, 303, 341, 439
FatI	CATG	3 cut(s)	61, 220, 301
FblI	GTMKAC	2 cut(s)	180, 336
FokI	GGATG	1 cut(s)	233
FspBI	CTAG	1 cut(s)	462
FspI	TGCGCA	1 cut(s)	359
GlaI	GCGC	3 cut(s)	281, 359, 578
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	3 cut(s)	219, 240, 436
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	3 cut(s)	282, 360, 579
Hin1II	CATG	3 cut(s)	65, 224, 305
Hin6I	GCGC	3 cut(s)	280, 358, 577
HinP1I	GCGC	3 cut(s)	280, 358, 577
HindIII	AAGCTT	2 cut(s)	377, 408
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	181, 337
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	250, 403
Hpy8I	GTNNAC	2 cut(s)	181, 337
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	3 cut(s)	185, 227, 562
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	5 cut(s)	43, 65, 191, 472, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 80, 286, 493
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	65, 224, 305
HspAI	GCGC	3 cut(s)	280, 358, 577
LguI	GCTCTTC	2 cut(s)	361, 563
LmnI	GCTCC	2 cut(s)	146, 277
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	317, 386
MboII	GAAGA	4 cut(s)	378, 464, 538, 580
MfeI	CAATTG	2 cut(s)	488, 505
MlsI	TGGCCA	1 cut(s)	436
MluCI	AATT	3 cut(s)	330, 488, 505
MluNI	TGGCCA	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	7 cut(s)	130, 252, 340, 406, 442, 522, 565
Mox20I	TGGCCA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	436
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	436
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	132, 133, 384
MunI	CAATTG	2 cut(s)	488, 505
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	71, 80, 286, 493
NciI	CCSGG	2 cut(s)	132, 133
NlaIII	CATG	3 cut(s)	65, 224, 305
NmuCI	GTSAC	1 cut(s)	386
NsbI	TGCGCA	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	54
PciSI	GCTCTTC	2 cut(s)	361, 563
PflMI	CCANNNNNTGG	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	239, 267
PspPPI	RGGWCCY	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	54
SapI	GCTCTTC	2 cut(s)	361, 563
SaqAI	TTAA	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	239, 267
ScrFI	CCNGG	3 cut(s)	132, 133, 384
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	267
SmaI	CCCGGG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	330, 488, 505
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	130, 131, 382
TaaI	ACNGT	3 cut(s)	185, 227, 562
TaiI	ACGT	1 cut(s)	54
TasI	AATT	3 cut(s)	330, 488, 505
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	81, 190
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	318, 502
TspGWI	ACGGA	1 cut(s)	44
TspMI	CCCGGG	1 cut(s)	131
TspRI	CASTG	2 cut(s)	81, 190
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	267
XmaI	CCCGGG	1 cut(s)	131
XmiI	GTMKAC	2 cut(s)	180, 336
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.