Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8344329.1

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 829

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8344329.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggcgtaccacaaccacctctctggagacttacctctccaccacttcacagaccaagcccaacagcagcagcaacagagccagtccttcatgacagaccaacccgacccaaattccaagtccacggagccccaccaccacccgtttcagaccgctccgaattggctgaacagcgccctcctccgcacccagtacgccgccaccacctccggcgcagacgccagcaacgccggaggaggaagcactaattttctcaacctccacacggcctccgactccaccgccgcctctcaggcctccaaccaatggctctcccgcccgatcctccagcgcaaccacagcgacgtcatcgacgacgtcgctgccggcgccggcgactccatgatggccggcgccatgtcgcacgactccgccgacatgaaaaacgacgccgccctgaataacaagagcgagggcggagtcgagagcggcggcggaggaggcgacggggtcatcaactggcagaatgcgaggcacaaggcggagattctagctcacccgctttacgagccgcttctctcggcacacgtggcgtgcctgaggatcgccacgccggtggaccagcttccgaggatcgacgctcagctggctcagtcgcagaatgtggtggctaagtactccggtttgagtcacggcatggtcgccgatgataaggagcttgatccgttcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

237

Amino Acids

25.28

Weight (kDa)

5.34

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	348, 360
AccB1I	GGYRCC	2 cut(s)	368, 392
AccB7I	CCANNNNNTGG	1 cut(s)	306
AccBSI	CCGCTC	2 cut(s)	155, 468
AclWI	GGATC	4 cut(s)	316, 590, 620, 695
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	112
AcvI	CACGTG	1 cut(s)	568
AcyI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
AfaI	GTAC	3 cut(s)	8, 194, 656
AfiI	CCNNNNNNNGG	2 cut(s)	265, 306
AflIII	ACRYGT	1 cut(s)	565
AleI	CACNNNNGTG	1 cut(s)	593
AluBI	AGCT	4 cut(s)	533, 604, 625, 697
AluI	AGCT	4 cut(s)	533, 604, 625, 697
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	4 cut(s)	316, 590, 620, 695
AoxI	GGCC	3 cut(s)	267, 294, 387
ApeKI	GCWGC	3 cut(s)	67, 70, 362
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	5 cut(s)	176, 215, 333, 371, 395
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	598
AxyI	CCTNAGG	1 cut(s)	578
BanI	GGYRCC	2 cut(s)	368, 392
BanII	GRGCYC	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	568
BbvI	GCAGC	3 cut(s)	79, 82, 349
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	2 cut(s)	282, 688
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	530
BfoI	RGCGCY	3 cut(s)	177, 372, 396
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 469, 472, 551
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	9 cut(s)	69, 72, 199, 286, 364, 433, 470, 473, 552
BmcAI	AGTACT	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	3 cut(s)	129, 370, 394
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	45, 311
Bpu1102I	GCTNAGC	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	568
BsaHI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
BsaJI	CCNNGG	2 cut(s)	123, 608
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 306
Bse118I	RCCGGY	4 cut(s)	365, 371, 389, 592
Bse1I	ACTGG	3 cut(s)	82, 190, 503
Bse21I	CCTNAGG	1 cut(s)	578
BseDI	CCNNGG	2 cut(s)	123, 608
BseLI	CCNNNNNNNGG	2 cut(s)	265, 306
BseMII	CTCAG	4 cut(s)	305, 569, 635, 644
BseNI	ACTGG	3 cut(s)	82, 190, 503
BseRI	GAGGAG	3 cut(s)	170, 249, 492
BseXI	GCAGC	3 cut(s)	79, 82, 349
BshFI	GGCC	3 cut(s)	269, 296, 389
BshNI	GGYRCC	2 cut(s)	368, 392
BsiSI	CCGG	7 cut(s)	210, 231, 366, 372, 390, 593, 660
BslI	CCNNNNNNNGG	2 cut(s)	265, 306
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	269, 296, 389
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	321, 582, 612, 700
Bsp1720I	GCTNAGC	1 cut(s)	621
BspANI	GGCC	3 cut(s)	269, 296, 389
BspCNI	CTCAG	4 cut(s)	304, 570, 634, 643
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	129, 370, 394
BspPI	GGATC	4 cut(s)	316, 590, 620, 695
BspT107I	GGYRCC	2 cut(s)	368, 392
BsrBI	CCGCTC	2 cut(s)	155, 468
BsrFI	RCCGGY	4 cut(s)	365, 371, 389, 592
BsrI	ACTGG	3 cut(s)	82, 190, 503
BssAI	RCCGGY	4 cut(s)	365, 371, 389, 592
BssECI	CCNNGG	2 cut(s)	123, 608
BssMI	GATC	4 cut(s)	321, 582, 612, 700
BssNI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
BstACI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
BstBAI	YACGTR	1 cut(s)	568
BstC8I	GCNNGC	6 cut(s)	223, 367, 373, 391, 574, 627
BstDEI	CTNAG	5 cut(s)	291, 578, 621, 630, 651
BstDSI	CCRYGG	1 cut(s)	123
BstH2I	RGCGCY	3 cut(s)	177, 372, 396
BstHHI	GCGC	5 cut(s)	176, 215, 333, 371, 395
BstKTI	GATC	4 cut(s)	324, 585, 615, 703
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	321, 582, 612, 700
BstMWI	GCNNNNNNNGC	8 cut(s)	227, 293, 339, 368, 480, 547, 569, 626
BstV1I	GCAGC	3 cut(s)	79, 82, 349
BstXI	CCANNNNNNTGG	2 cut(s)	23, 595
Bsu36I	CCTNAGG	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	269, 296, 389
BtgI	CCRYGG	1 cut(s)	123
Cac8I	GCNNGC	6 cut(s)	223, 367, 373, 391, 574, 627
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	5 cut(s)	176, 215, 333, 371, 395
Cfr10I	RCCGGY	4 cut(s)	365, 371, 389, 592
Cfr13I	GGNCC	1 cut(s)	598
CseI	GACGC	3 cut(s)	227, 437, 626
Csp6I	GTAC	3 cut(s)	7, 193, 655
CviAII	CATG	6 cut(s)	91, 382, 397, 418, 676, 709
CviQI	GTAC	3 cut(s)	7, 193, 655
DdeI	CTNAG	5 cut(s)	291, 578, 621, 630, 651
DinI	GGCGCC	2 cut(s)	370, 394
DpnI	GATC	4 cut(s)	323, 584, 614, 702
DpnII	GATC	4 cut(s)	321, 582, 612, 700
EaeI	YGGCCR	1 cut(s)	387
EciI	GGCGGA	4 cut(s)	400, 471, 489, 536
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	598
Eco72I	CACGTG	1 cut(s)	568
Eco81I	CCTNAGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	2 cut(s)	370, 394
EheI	GGCGCC	2 cut(s)	370, 394
FaeI	CATG	5 cut(s)	94, 385, 400, 421, 679
FaiI	YATR	6 cut(s)	92, 383, 398, 419, 677, 710
FatI	CATG	5 cut(s)	90, 381, 396, 417, 675
FauI	CCCGC	2 cut(s)	323, 546
Fnu4HI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 469, 472, 551
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 469, 472, 551
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	5 cut(s)	175, 214, 332, 370, 394
GluI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 469, 472, 551
GsuI	CTGGAG	2 cut(s)	45, 311
HaeII	RGCGCY	3 cut(s)	177, 372, 396
HaeIII	GGCC	3 cut(s)	269, 296, 389
HapII	CCGG	7 cut(s)	210, 231, 366, 372, 390, 593, 660
HgaI	GACGC	3 cut(s)	227, 437, 626
HhaI	GCGC	5 cut(s)	176, 215, 333, 371, 395
Hin1I	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
Hin1II	CATG	5 cut(s)	94, 385, 400, 421, 679
Hin6I	GCGC	5 cut(s)	174, 213, 331, 369, 393
HinP1I	GCGC	5 cut(s)	174, 213, 331, 369, 393
HinfI	GANTC	6 cut(s)	275, 377, 407, 459, 526, 667
HpaII	CCGG	7 cut(s)	210, 231, 366, 372, 390, 593, 660
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	123, 598
Hpy188I	TCNGA	4 cut(s)	150, 159, 274, 609
Hpy188III	TCNNGA	3 cut(s)	24, 91, 463
Hpy8I	GTNNAC	2 cut(s)	123, 598
Hpy99I	CGWCG	7 cut(s)	347, 356, 359, 362, 431, 488, 620
HpyAV	CCTTC	1 cut(s)	97
HpyCH4IV	ACGT	3 cut(s)	345, 357, 567
HpyF10VI	GCNNNNNNNGC	8 cut(s)	227, 293, 339, 368, 480, 547, 569, 626
HpyF3I	CTNAG	5 cut(s)	291, 578, 621, 630, 651
HpySE526I	ACGT	3 cut(s)	345, 357, 567
Hsp92I	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
Hsp92II	CATG	5 cut(s)	94, 385, 400, 421, 679
HspAI	GCGC	5 cut(s)	174, 213, 331, 369, 393
KasI	GGCGCC	2 cut(s)	368, 392
KroI	GCCGGC	3 cut(s)	365, 371, 389
KroNI	GCCGGC	3 cut(s)	367, 373, 391
Kzo9I	GATC	4 cut(s)	321, 582, 612, 700
LmnI	GCTCC	3 cut(s)	127, 160, 694
Lsp1109I	GCAGC	3 cut(s)	79, 82, 349
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	3 cut(s)	345, 357, 567
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	4 cut(s)	323, 584, 614, 702
MbiI	CCGCTC	2 cut(s)	155, 468
MboI	GATC	4 cut(s)	321, 582, 612, 700
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	3 cut(s)	112, 160, 247
Mly113I	GGCGCC	2 cut(s)	369, 393
MlyI	GAGTC	5 cut(s)	269, 371, 401, 468, 676
MmeI	TCCRAC	2 cut(s)	297, 324
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	3 cut(s)	365, 371, 389
MslI	CAYNNNNRTG	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	7 cut(s)	210, 231, 366, 372, 390, 593, 660
Mva1269I	GAATGC	1 cut(s)	511
MwoI	GCNNNNNNNGC	8 cut(s)	227, 293, 339, 368, 480, 547, 569, 626
NaeI	GCCGGC	3 cut(s)	367, 373, 391
NarI	GGCGCC	2 cut(s)	369, 393
NdeII	GATC	4 cut(s)	321, 582, 612, 700
NgoMIV	GCCGGC	3 cut(s)	365, 371, 389
NlaIII	CATG	5 cut(s)	94, 385, 400, 421, 679
NlaIV	GGNNCC	3 cut(s)	129, 370, 394
NmeAIII	GCCGAG	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	668
OliI	CACNNNNGTG	1 cut(s)	593
PagI	TCATGA	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 411
PctI	GAATGC	1 cut(s)	511
PdiI	GCCGGC	3 cut(s)	367, 373, 391
PfeI	GAWTC	1 cut(s)	526
PflFI	GACNNNGTC	2 cut(s)	356, 488
PflMI	CCANNNNNTGG	1 cut(s)	306
PkrI	GCNGC	9 cut(s)	69, 72, 199, 286, 364, 433, 470, 473, 552
PleI	GAGTC	5 cut(s)	269, 371, 401, 467, 675
PluTI	GGCGCC	2 cut(s)	372, 396
PmaCI	CACGTG	1 cut(s)	568
PmlI	CACGTG	1 cut(s)	568
PpsI	GAGTC	5 cut(s)	269, 371, 401, 467, 675
Ppu21I	YACGTR	1 cut(s)	568
PspCI	CACGTG	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	129, 370, 394
PspPI	GGNCC	1 cut(s)	598
PsyI	GACNNNGTC	2 cut(s)	356, 488
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	3 cut(s)	8, 194, 656
RsaNI	GTAC	3 cut(s)	7, 193, 655
RseI	CAYNNNNRTG	1 cut(s)	593
SatI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 469, 472, 551
Sau3AI	GATC	4 cut(s)	321, 582, 612, 700
Sau96I	GGNCC	1 cut(s)	598
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	5 cut(s)	269, 371, 401, 468, 676
SduI	GDGCHC	1 cut(s)	132
SfoI	GGCGCC	2 cut(s)	370, 394
SgrAI	CRCCGGYG	2 cut(s)	371, 592
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	593
Sse9I	AATT	3 cut(s)	112, 160, 247
SseBI	AGGCCT	1 cut(s)	296
SspDI	GGCGCC	2 cut(s)	368, 392
SspMI	CTAG	1 cut(s)	530
StuI	AGGCCT	1 cut(s)	296
TaiI	ACGT	3 cut(s)	348, 360, 570
TaqI	TCGA	3 cut(s)	351, 462, 615
TasI	AATT	3 cut(s)	112, 160, 247
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	6 cut(s)	200, 287, 434, 471, 474, 553
TfiI	GAWTC	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	3 cut(s)	67, 70, 362
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	3 cut(s)	79, 434, 697
TspGWI	ACGGA	2 cut(s)	140, 693
Tth111I	GACNNNGTC	2 cut(s)	356, 488
Van91I	CCANNNNNTGG	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	1 cut(s)	530
ZraI	GACGTC	2 cut(s)	346, 358
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.