Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Forward (+)

57683144 .. 57686955

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCGTACCACAACCACCTCCCTGGAGACTTACCTCTCCACCACTTCACAGACCAAGCCCAACAGCAGCAGCAACAGAGCCAGTCCTTCATGACCGACCAACCCGACCCAAATTCCAAGTCCACGGAGCCCCACCACCACACGTTTCAGACCGCTCCGAATTGGCTGAACACCGCCCTCCTCCGCACCCAGTACGCCTCCACCACCTCCGGCGCAGACGCCAGCAACGCCGGAGGAGGAAGCACTAATTTTCTCAACCTCCACACGGCCTCCGACTCCACCGCCGCCTCTCAGGCCTCCAACCAATGGCTCTCCCGCCCGATCCTCCAGCGAAACCACAGCGACGTCATCGACGACGTCGCTGCCGGCGCCGGCGACTCCATGATGGCCGGCGCCATGTCGCACGACTCCGCCGACATGAAAAACGACGCCGCCCTGAATAACAATAACAAGAGCGAGGGCGGAGTCGAGAGCGGCGGCGGAGGAGGAGGAGGAGGCGACGGGGTCATCAACTGGCAGAATGCGAGGCACAAGGCGGAGATTCTAGCTCACCCGTTTTACGAGCCGCTTCTCTCGGCACACGTGGCGTGCCTGAGGATCGCCACGCCGGTGGACCAGCTTCCGAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTGGCTAAGTACTCCGGTTTGAGTCACGGCATGGTCGCCGATGATAAGGAGCTTGATCAGTTCATGAGGCACTATGTTATGTTGCTATGTTCTTTTAAAGAACAACTGCAACAACACGTCCGTGTCCATGCAATGGAAGCAGTGATGGCTTGCTGGGAGATTGAGCAATCACTACAGAGCCTGACAGGAGTTTCCCCCGGGGAGGGTACGGGAGCTACAATGTCCGATGATGATGATGAGCAAGTAGACAGTGATGCAAACTTGTTTGATGGAAGTATGGACGGCCATGACAGTATGGGATTTGGCCCTCTCATCCCGACAGAGAGCGAAAGGTCCTTGATGGAGCGCGTAAGGCAGGAGTTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAGATATTGCGCAAGAGAAGAGCTGGAAAGCTTCCTGGTGACACCACCTCTGTCCTGAAAGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACTGAGGAAGACAAGGCTAGGTTGGTGCAAGAAACTGGTTTGCAATTGAAGCAGATAAACAACTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACCTCCACGGTTTTGAAGAGCAAGCGCAAAAGTAATGCAGGTGAAAACAGTGGTGATCGATTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

448

Amino Acids

49.43

Weight (kDa)

5.75

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	178 - 218	1.4e-16	KNOX1 domain
KNOX2	PF03791	232 - 282	1.9e-18	KNOX2 domain
ELK	PF03789	340 - 361	7.8e-07	ELK domain
Homeobox_KN	PF05920	380 - 419	1e-18	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1307
AatII	GACGTC	2 cut(s)	348, 360
Acc16I	TGCGCA	1 cut(s)	1085
Acc36I	ACCTGC	1 cut(s)	1307
AccB1I	GGYRCC	2 cut(s)	368, 392
AccB7I	CCANNNNNTGG	2 cut(s)	306, 793
AccBSI	CCGCTC	2 cut(s)	155, 474
AccI	GTMKAC	2 cut(s)	906, 1062
AccII	CGCG	1 cut(s)	1008
AclWI	GGATC	3 cut(s)	316, 605, 635
AcoI	YGGCCR	3 cut(s)	387, 943, 1160
AcsI	RAATTY	1 cut(s)	112
AcvI	CACGTG	1 cut(s)	583
AcyI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
AfaI	GTAC	4 cut(s)	8, 194, 671, 868
AfiI	CCNNNNNNNGG	5 cut(s)	265, 306, 793, 862, 863
AflIII	ACRYGT	3 cut(s)	141, 580, 775
AgsI	TTSAA	4 cut(s)	1024, 1219, 1278, 1294
AjiI	CACGTC	1 cut(s)	778
AjnI	CCWGG	2 cut(s)	22, 1108
AleI	CACNNNNGTG	2 cut(s)	608, 780
AluBI	AGCT	8 cut(s)	548, 619, 640, 712, 875, 1097, 1105, 1136
AluI	AGCT	8 cut(s)	548, 619, 640, 712, 875, 1097, 1105, 1136
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	316, 605, 635
AlwNI	CAGNNNCTG	1 cut(s)	841
Ama87I	CYCGRG	1 cut(s)	857
AoxI	GGCC	6 cut(s)	267, 294, 387, 943, 964, 1160
ApeKI	GCWGC	3 cut(s)	67, 70, 362
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	6 cut(s)	215, 371, 395, 1008, 1086, 1305
AspS9I	GGNCC	3 cut(s)	613, 965, 993
AsuC2I	CCSGG	2 cut(s)	858, 859
AsuHPI	GGTGA	4 cut(s)	542, 1124, 1331, 1343
AvaI	CYCGRG	1 cut(s)	857
AvaII	GGWCC	2 cut(s)	613, 993
AxyI	CCTNAGG	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	1162
BanI	GGYRCC	2 cut(s)	368, 392
BanII	GRGCYC	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	1185
BbvI	GCAGC	3 cut(s)	79, 82, 349
BccI	CCATC	4 cut(s)	379, 799, 923, 994
BceAI	ACGGC	3 cut(s)	282, 703, 958
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	2 cut(s)	24, 1110
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	858, 859
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	545, 1188
BfmI	CTRYAG	1 cut(s)	833
BfoI	RGCGCY	2 cut(s)	372, 396
BfuAI	ACCTGC	1 cut(s)	1307
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	8 cut(s)	68, 71, 285, 363, 432, 475, 478, 566
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	8 cut(s)	69, 72, 286, 364, 433, 476, 479, 567
BmcAI	AGTACT	1 cut(s)	671
Bme1390I	CCNGG	4 cut(s)	24, 858, 859, 1110
Bme18I	GGWCC	2 cut(s)	613, 993
BmeT110I	CYCGRG	1 cut(s)	857
BmgBI	CACGTC	1 cut(s)	778
BmgT120I	GGNCC	3 cut(s)	613, 965, 993
BmiI	GGNNCC	3 cut(s)	129, 370, 394
BmrFI	CCNGG	4 cut(s)	24, 858, 859, 1110
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	904
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	1185
BpmI	CTGGAG	2 cut(s)	45, 311
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuMI	CCSGG	2 cut(s)	858, 859
Bsa29I	ATCGAT	1 cut(s)	1336
BsaAI	YACGTR	1 cut(s)	583
BsaHI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
BsaJI	CCNNGG	7 cut(s)	22, 123, 623, 856, 857, 858, 1284
BsaWI	WCCGGW	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 306, 793, 862, 863
Bse118I	RCCGGY	4 cut(s)	365, 371, 389, 607
Bse1I	ACTGG	6 cut(s)	82, 190, 518, 1210, 1238, 1265
Bse21I	CCTNAGG	1 cut(s)	593
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	24, 1110
BseCI	ATCGAT	1 cut(s)	1336
BseDI	CCNNGG	7 cut(s)	22, 123, 623, 856, 857, 858, 1284
BseGI	GGATG	1 cut(s)	972
BseLI	CCNNNNNNNGG	5 cut(s)	265, 306, 793, 862, 863
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	5 cut(s)	305, 584, 650, 659, 1164
BseNI	ACTGG	6 cut(s)	82, 190, 518, 1210, 1238, 1265
BseRI	GAGGAG	7 cut(s)	170, 249, 498, 501, 504, 507, 1088
BseXI	GCAGC	3 cut(s)	79, 82, 349
BseYI	CCCAGC	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	1008
BshFI	GGCC	6 cut(s)	269, 296, 389, 945, 966, 1162
BshNI	GGYRCC	2 cut(s)	368, 392
BshVI	ATCGAT	1 cut(s)	1336
BsiHKCI	CYCGRG	1 cut(s)	857
BsiSI	CCGG	8 cut(s)	210, 231, 366, 372, 390, 608, 675, 858
BslI	CCNNNNNNNGG	5 cut(s)	265, 306, 793, 862, 863
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	6 cut(s)	269, 296, 389, 945, 966, 1162
BsoBI	CYCGRG	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	321, 597, 627, 715, 1333
Bsp1720I	GCTNAGC	1 cut(s)	636
BspANI	GGCC	6 cut(s)	269, 296, 389, 945, 966, 1162
BspCNI	CTCAG	5 cut(s)	304, 585, 649, 658, 1165
BspDI	ATCGAT	1 cut(s)	1336
BspFNI	CGCG	1 cut(s)	1008
BspHI	TCATGA	2 cut(s)	90, 723
BspLI	GGNNCC	3 cut(s)	129, 370, 394
BspMI	ACCTGC	1 cut(s)	1307
BspPI	GGATC	3 cut(s)	316, 605, 635
BspQI	GCTCTTC	2 cut(s)	1087, 1289
BspT107I	GGYRCC	2 cut(s)	368, 392
BsrBI	CCGCTC	2 cut(s)	155, 474
BsrDI	GCAATG	1 cut(s)	798
BsrFI	RCCGGY	4 cut(s)	365, 371, 389, 607
BsrI	ACTGG	6 cut(s)	82, 190, 518, 1210, 1238, 1265
BssAI	RCCGGY	4 cut(s)	365, 371, 389, 607
BssECI	CCNNGG	7 cut(s)	22, 123, 623, 856, 857, 858, 1284
BssMI	GATC	5 cut(s)	321, 597, 627, 715, 1333
BssNI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
Bst2UI	CCWGG	2 cut(s)	24, 1110
Bst4CI	ACNGT	4 cut(s)	911, 953, 1288, 1328
Bst6I	CTCTTC	3 cut(s)	1087, 1247, 1289
BstACI	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
BstBAI	YACGTR	1 cut(s)	583
BstC8I	GCNNGC	8 cut(s)	223, 367, 373, 391, 589, 642, 811, 1301
BstDEI	CTNAG	6 cut(s)	291, 593, 636, 645, 666, 1173
BstDSI	CCRYGG	2 cut(s)	123, 1284
BstF5I	GGATG	1 cut(s)	972
BstFNI	CGCG	1 cut(s)	1008
BstH2I	RGCGCY	2 cut(s)	372, 396
BstHHI	GCGC	6 cut(s)	215, 371, 395, 1008, 1086, 1305
BstKTI	GATC	5 cut(s)	324, 600, 630, 718, 1336
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	5 cut(s)	321, 597, 627, 715, 1333
BstMWI	GCNNNNNNNGC	9 cut(s)	227, 293, 368, 584, 641, 797, 806, 1012, 1219
BstNI	CCWGG	2 cut(s)	24, 1110
BstSCI	CCNGG	4 cut(s)	22, 856, 857, 1108
BstSFI	CTRYAG	1 cut(s)	833
BstUI	CGCG	1 cut(s)	1008
BstV1I	GCAGC	3 cut(s)	79, 82, 349
BstV2I	GAAGAC	1 cut(s)	1185
BstXI	CCANNNNNNTGG	2 cut(s)	23, 610
Bsu15I	ATCGAT	1 cut(s)	1336
Bsu36I	CCTNAGG	1 cut(s)	593
BsuRI	GGCC	6 cut(s)	269, 296, 389, 945, 966, 1162
BsuTUI	ATCGAT	1 cut(s)	1336
BtgI	CCRYGG	2 cut(s)	123, 1284
BtrI	CACGTC	1 cut(s)	778
BtsCI	GGATG	1 cut(s)	972
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	807, 916, 1333
BveI	ACCTGC	1 cut(s)	1307
Cac8I	GCNNGC	8 cut(s)	223, 367, 373, 391, 589, 642, 811, 1301
CaiI	CAGNNNCTG	1 cut(s)	841
CciI	TCATGA	2 cut(s)	90, 723
CfoI	GCGC	6 cut(s)	215, 371, 395, 1008, 1086, 1305
Cfr10I	RCCGGY	4 cut(s)	365, 371, 389, 607
Cfr13I	GGNCC	3 cut(s)	613, 965, 993
Cfr9I	CCCGGG	1 cut(s)	857
ClaI	ATCGAT	1 cut(s)	1336
CseI	GACGC	3 cut(s)	227, 437, 641
Csp6I	GTAC	4 cut(s)	7, 193, 670, 867
CviAII	CATG	9 cut(s)	91, 382, 397, 418, 691, 724, 788, 947, 1028
CviQI	GTAC	4 cut(s)	7, 193, 670, 867
DdeI	CTNAG	6 cut(s)	291, 593, 636, 645, 666, 1173
DinI	GGCGCC	2 cut(s)	370, 394
DpnI	GATC	5 cut(s)	323, 599, 629, 717, 1335
DpnII	GATC	5 cut(s)	321, 597, 627, 715, 1333
DraI	TTTAAA	1 cut(s)	757
EaeI	YGGCCR	3 cut(s)	387, 943, 1160
Eam1104I	CTCTTC	3 cut(s)	1087, 1247, 1289
EarI	CTCTTC	3 cut(s)	1087, 1247, 1289
EciI	GGCGGA	4 cut(s)	400, 477, 495, 551
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	613, 993
Eco72I	CACGTG	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	993
EcoRII	CCWGG	2 cut(s)	22, 1108
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	2 cut(s)	370, 394
EheI	GGCGCC	2 cut(s)	370, 394
FaeI	CATG	9 cut(s)	94, 385, 400, 421, 694, 727, 791, 950, 1031
FatI	CATG	9 cut(s)	90, 381, 396, 417, 690, 723, 787, 946, 1027
FauI	CCCGC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	715
FblI	GTMKAC	2 cut(s)	906, 1062
Fnu4HI	GCNGC	8 cut(s)	68, 71, 285, 363, 432, 475, 478, 566
FokI	GGATG	1 cut(s)	959
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	8 cut(s)	68, 71, 285, 363, 432, 475, 478, 566
FspBI	CTAG	2 cut(s)	545, 1188
FspI	TGCGCA	1 cut(s)	1085
GlaI	GCGC	6 cut(s)	214, 370, 394, 1007, 1085, 1304
GluI	GCNGC	8 cut(s)	68, 71, 285, 363, 432, 475, 478, 566
GsaI	CCCAGC	1 cut(s)	817
GsuI	CTGGAG	2 cut(s)	45, 311
HaeII	RGCGCY	2 cut(s)	372, 396
HaeIII	GGCC	6 cut(s)	269, 296, 389, 945, 966, 1162
HapII	CCGG	8 cut(s)	210, 231, 366, 372, 390, 608, 675, 858
HgaI	GACGC	3 cut(s)	227, 437, 641
HhaI	GCGC	6 cut(s)	215, 371, 395, 1008, 1086, 1305
Hin1I	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
Hin1II	CATG	9 cut(s)	94, 385, 400, 421, 694, 727, 791, 950, 1031
Hin6I	GCGC	6 cut(s)	213, 369, 393, 1006, 1084, 1303
HinP1I	GCGC	6 cut(s)	213, 369, 393, 1006, 1084, 1303
HindIII	AAGCTT	2 cut(s)	1103, 1134
HinfI	GANTC	7 cut(s)	275, 377, 407, 465, 541, 682, 1338
HpaII	CCGG	8 cut(s)	210, 231, 366, 372, 390, 608, 675, 858
HphI	GGTGA	4 cut(s)	542, 1124, 1331, 1343
Hpy166II	GTNNAC	4 cut(s)	123, 613, 907, 1063
Hpy188I	TCNGA	5 cut(s)	150, 159, 274, 624, 886
Hpy188III	TCNNGA	5 cut(s)	91, 469, 724, 976, 1129
Hpy8I	GTNNAC	4 cut(s)	123, 613, 907, 1063
Hpy99I	CGWCG	7 cut(s)	347, 356, 359, 362, 431, 503, 635
HpyAV	CCTTC	2 cut(s)	97, 1284
HpyCH4III	ACNGT	4 cut(s)	911, 953, 1288, 1328
HpyCH4IV	ACGT	5 cut(s)	143, 345, 357, 582, 777
HpyCH4V	TGCA	6 cut(s)	769, 791, 917, 1198, 1213, 1316
HpyF10VI	GCNNNNNNNGC	9 cut(s)	227, 293, 368, 584, 641, 797, 806, 1012, 1219
HpyF3I	CTNAG	6 cut(s)	291, 593, 636, 645, 666, 1173
HpySE526I	ACGT	5 cut(s)	143, 345, 357, 582, 777
Hsp92I	GRCGYC	6 cut(s)	219, 345, 357, 369, 393, 429
Hsp92II	CATG	9 cut(s)	94, 385, 400, 421, 694, 727, 791, 950, 1031
HspAI	GCGC	6 cut(s)	213, 369, 393, 1006, 1084, 1303
KasI	GGCGCC	2 cut(s)	368, 392
KroI	GCCGGC	3 cut(s)	365, 371, 389
KroNI	GCCGGC	3 cut(s)	367, 373, 391
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	321, 597, 627, 715, 1333
LguI	GCTCTTC	2 cut(s)	1087, 1289
LmnI	GCTCC	5 cut(s)	127, 160, 709, 872, 1003
Lsp1109I	GCAGC	3 cut(s)	79, 82, 349
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	2 cut(s)	545, 1188
MaeII	ACGT	5 cut(s)	143, 345, 357, 582, 777
MaeIII	GTNAC	3 cut(s)	683, 1043, 1112
MalI	GATC	5 cut(s)	323, 599, 629, 717, 1335
MbiI	CCGCTC	2 cut(s)	155, 474
MboI	GATC	5 cut(s)	321, 597, 627, 715, 1333
MboII	GAAGA	4 cut(s)	1104, 1190, 1264, 1306
MfeI	CAATTG	1 cut(s)	1214
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	1162
MluCI	AATT	5 cut(s)	112, 160, 247, 1056, 1214
MluNI	TGGCCA	1 cut(s)	1162
Mly113I	GGCGCC	2 cut(s)	369, 393
MlyI	GAGTC	5 cut(s)	269, 371, 401, 474, 691
MmeI	TCCRAC	3 cut(s)	297, 324, 1193
Mox20I	TGGCCA	1 cut(s)	1162
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	3 cut(s)	365, 371, 389
MscI	TGGCCA	1 cut(s)	1162
MseI	TTAA	1 cut(s)	756
MslI	CAYNNNNRTG	2 cut(s)	608, 780
Msp20I	TGGCCA	1 cut(s)	1162
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	8 cut(s)	210, 231, 366, 372, 390, 608, 675, 858
MspR9I	CCNGG	4 cut(s)	24, 858, 859, 1110
MunI	CAATTG	1 cut(s)	1214
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	24, 1110
MvnI	CGCG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	9 cut(s)	227, 293, 368, 584, 641, 797, 806, 1012, 1219
NaeI	GCCGGC	3 cut(s)	367, 373, 391
NarI	GGCGCC	2 cut(s)	369, 393
NciI	CCSGG	2 cut(s)	858, 859
NdeII	GATC	5 cut(s)	321, 597, 627, 715, 1333
NgoMIV	GCCGGC	3 cut(s)	365, 371, 389
NlaIII	CATG	9 cut(s)	94, 385, 400, 421, 694, 727, 791, 950, 1031
NlaIV	GGNNCC	3 cut(s)	129, 370, 394
NmeAIII	GCCGAG	1 cut(s)	554
NmuCI	GTSAC	2 cut(s)	683, 1112
NsbI	TGCGCA	1 cut(s)	1085
OliI	CACNNNNGTG	2 cut(s)	608, 780
PagI	TCATGA	2 cut(s)	90, 723
PaqCI	CACCTGC	1 cut(s)	1307
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	2 cut(s)	1087, 1289
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 411
PctI	GAATGC	1 cut(s)	526
PdiI	GCCGGC	3 cut(s)	367, 373, 391
PfeI	GAWTC	2 cut(s)	541, 1338
PflFI	GACNNNGTC	2 cut(s)	356, 503
PflMI	CCANNNNNTGG	2 cut(s)	306, 793
PkrI	GCNGC	8 cut(s)	69, 72, 286, 364, 433, 476, 479, 567
PleI	GAGTC	5 cut(s)	269, 371, 401, 473, 690
PluTI	GGCGCC	2 cut(s)	372, 396
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
PpsI	GAGTC	5 cut(s)	269, 371, 401, 473, 690
Ppu21I	YACGTR	1 cut(s)	583
PpuMI	RGGWCCY	1 cut(s)	993
Psp5II	RGGWCCY	1 cut(s)	993
Psp6I	CCWGG	2 cut(s)	22, 1108
PspCI	CACGTG	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	813
PspGI	CCWGG	2 cut(s)	22, 1108
PspN4I	GGNNCC	3 cut(s)	129, 370, 394
PspPI	GGNCC	3 cut(s)	613, 965, 993
PspPPI	RGGWCCY	1 cut(s)	993
PstNI	CAGNNNCTG	1 cut(s)	841
PsyI	GACNNNGTC	2 cut(s)	356, 503
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	4 cut(s)	8, 194, 671, 868
RsaNI	GTAC	4 cut(s)	7, 193, 670, 867
RseI	CAYNNNNRTG	2 cut(s)	608, 780
SapI	GCTCTTC	2 cut(s)	1087, 1289
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	8 cut(s)	68, 71, 285, 363, 432, 475, 478, 566
Sau3AI	GATC	5 cut(s)	321, 597, 627, 715, 1333
Sau96I	GGNCC	3 cut(s)	613, 965, 993
ScaI	AGTACT	1 cut(s)	671
SchI	GAGTC	5 cut(s)	269, 371, 401, 474, 691
ScrFI	CCNGG	4 cut(s)	24, 858, 859, 1110
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	904
SfcI	CTRYAG	1 cut(s)	833
SfoI	GGCGCC	2 cut(s)	370, 394
SgrAI	CRCCGGYG	2 cut(s)	371, 607
SinI	GGWCC	2 cut(s)	613, 993
SmaI	CCCGGG	1 cut(s)	859
SmiMI	CAYNNNNRTG	2 cut(s)	608, 780
Sse9I	AATT	5 cut(s)	112, 160, 247, 1056, 1214
SseBI	AGGCCT	1 cut(s)	296
SspDI	GGCGCC	2 cut(s)	368, 392
SspMI	CTAG	2 cut(s)	545, 1188
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	22, 856, 857, 1108
TaaI	ACNGT	4 cut(s)	911, 953, 1288, 1328
TaiI	ACGT	5 cut(s)	146, 348, 360, 585, 780
TaqI	TCGA	4 cut(s)	351, 468, 630, 1336
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	5 cut(s)	112, 160, 247, 1056, 1214
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	5 cut(s)	287, 434, 477, 480, 568
TfiI	GAWTC	2 cut(s)	541, 1338
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	3 cut(s)	807, 916, 1333
TseFI	GTSAC	2 cut(s)	683, 1112
TseI	GCWGC	3 cut(s)	67, 70, 362
Tsp45I	GTSAC	2 cut(s)	683, 1112
TspDTI	ATGAA	6 cut(s)	79, 434, 712, 1044, 1228, 1330
TspGWI	ACGGA	2 cut(s)	140, 770
TspMI	CCCGGG	1 cut(s)	857
TspRI	CASTG	3 cut(s)	807, 916, 1333
Tth111I	GACNNNGTC	2 cut(s)	356, 503
Van91I	CCANNNNNTGG	2 cut(s)	306, 793
VpaK11BI	GGWCC	2 cut(s)	613, 993
XapI	RAATTY	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	857
XmiI	GTMKAC	2 cut(s)	906, 1062
XspI	CTAG	2 cut(s)	545, 1188
ZraI	GACGTC	2 cut(s)	346, 358
ZrmI	AGTACT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.