Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

41692152 .. 41694532

Gene Structure 2381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0269900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCAAAAAAGCTCATGCATGCCCTTCAATACAATGCTTATGGTGGAGGTCCTTCAGGCTTAAAGCATGTTGAAGTTCCGGTTCCCACTCCAAATAAAGATGAAGTGTTGATGAAATTGGAGGCAGCGAGTCTAAATCCATTTGATTGGAAAGTTCAGAAAGGCATGATTTGGCCTTTGCTGCCTCGCAAGTTTCCACATATACCTGGCACTGATGTGGCGGGAGAGGTTGTAGAGGTTGGACCAGAAGTCAAAAATTTCAAAGCCGGTGACAAAGTTGTAGCCATGGTTAACCCTCTTAGTGGAGGTGGCCTAGCTGAGCTAACCGTGACAAAGGAGAGCTTGACTGTTGCAAGGCCACCCGAAGTTTCTGCAGCCACTGCTGTAGGATTACCTGTTGCTGGTCTCACAGCTCACCAGGCACCCTGTCAGTCTGCTGGAGTCAAGCTTGATGGAAGTGGCCAACAAGCAAACATTCTGATCACAGCCGCCTCAGGCGGTGTAGGTCACTATGCGGTTCAATTGGCAAAGCTTGGGAACACTCACGTGACAGCCACTTGTGGTGCACGCAACATTGAATTCGTCAAGAGCCTAGGGGCTGATGAGGTTCTCGACTACAAGACTCCAGAAGGAGCTGCTCTGAAGAGTCCATCTGGACGGAAATATGATGCCGTGATCCATTGTGCTACAGGCATTCCTTGGTCAACTTTTGAACCTAATTTAAGTGCAAGTGGTAAGGTAATAGATATTACTCCTGGCCTCAGTGCAGTGATGAGTTTTGCTGTAGGAAAGCTTACCTTTTCCAAGAAGCAACTAGTGCCACTGCTCCTAGCTCCCAAGGCCGAGAACCTGGTTTACCTTCTGAAGTTGGTTAGAGAAGGGAAGCTCAAGACAGTAATCGACTCCAAGTATCCCCTGACCAAGGCTGAAGATGCTTGGGCTAAGAGTATTGATGGTCATGCTACAGGAAAGATAATTGTGGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

329

Amino Acids

34.49

Weight (kDa)

9.02

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 117	2e-16	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	167 - 230	1.1e-09	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	198 - 327	5.5e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AciI	CCGC	4 cut(s)	221, 489, 498, 515
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	2 cut(s)	256, 578
AcuI	CTGAAG	4 cut(s)	39, 662, 884, 948
AcvI	CACGTG	1 cut(s)	547
AfiI	CCNNNNNNNGG	3 cut(s)	302, 401, 922
AgsI	TTSAA	6 cut(s)	29, 74, 262, 521, 578, 713
AhdI	GACNNNNNGTC	1 cut(s)	248
AhlI	ACTAGT	1 cut(s)	814
AjnI	CCWGG	4 cut(s)	205, 417, 754, 849
AleI	CACNNNNGTG	2 cut(s)	215, 545
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	564
AlwI	GGATC	1 cut(s)	670
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	6 cut(s)	173, 310, 356, 460, 757, 840
ApaLI	GTGCAC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	125, 181, 374, 635
ApoI	RAATTY	2 cut(s)	256, 578
AspA2I	CCTAGG	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	50, 242
AsuHPI	GGTGA	2 cut(s)	281, 407
AvaII	GGWCC	2 cut(s)	50, 242
AvrII	CCTAGG	1 cut(s)	592
AxyI	CCTNAGG	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	421
BbrPI	CACGTG	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	4 cut(s)	137, 168, 386, 622
BccI	CCATC	3 cut(s)	446, 658, 947
BceAI	ACGGC	1 cut(s)	656
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	4 cut(s)	207, 419, 756, 851
BciVI	GTATCC	1 cut(s)	921
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	814
BfaI	CTAG	4 cut(s)	314, 593, 815, 830
BfmI	CTRYAG	5 cut(s)	372, 384, 687, 783, 963
BfuI	GTATCC	1 cut(s)	921
BisI	GCNGC	5 cut(s)	126, 182, 375, 489, 636
BlnI	CCTAGG	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	5 cut(s)	127, 183, 376, 490, 637
Bme1390I	CCNGG	4 cut(s)	207, 419, 756, 851
Bme18I	GGWCC	2 cut(s)	50, 242
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	50, 242
BmiI	GGNNCC	2 cut(s)	84, 423
BmrFI	CCNGG	4 cut(s)	207, 419, 756, 851
BmsI	GCATC	2 cut(s)	658, 922
BpmI	CTGGAG	2 cut(s)	459, 609
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	872
BsaAI	YACGTR	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	5 cut(s)	285, 592, 698, 837, 921
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 401, 922
Bse118I	RCCGGY	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	493
BseBI	CCWGG	4 cut(s)	207, 419, 756, 851
BseDI	CCNNGG	5 cut(s)	285, 592, 698, 837, 921
BseLI	CCNNNNNNNGG	3 cut(s)	302, 401, 922
BseMII	CTCAG	3 cut(s)	309, 507, 775
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	4 cut(s)	137, 168, 386, 622
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	6 cut(s)	175, 312, 358, 462, 759, 842
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	80, 267
BslI	CCNNNNNNNGG	3 cut(s)	302, 401, 922
BsmAI	GTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	6 cut(s)	175, 312, 358, 462, 759, 842
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	480, 675
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	4 cut(s)	221, 489, 498, 515
BspANI	GGCC	6 cut(s)	175, 312, 358, 462, 759, 842
BspCNI	CTCAG	3 cut(s)	310, 506, 774
BspLI	GGNNCC	2 cut(s)	84, 423
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	670
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	5 cut(s)	285, 592, 698, 837, 921
BssMI	GATC	2 cut(s)	480, 675
BssT1I	CCWWGG	5 cut(s)	285, 592, 698, 837, 921
Bst2UI	CCWGG	4 cut(s)	207, 419, 756, 851
Bst4CI	ACNGT	3 cut(s)	328, 349, 895
Bst6I	CTCTTC	1 cut(s)	638
BstAPI	GCANNNNNTGC	2 cut(s)	380, 817
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	21, 568
BstDEI	CTNAG	6 cut(s)	299, 318, 493, 761, 942, 987
BstDSI	CCRYGG	1 cut(s)	285
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstKTI	GATC	2 cut(s)	483, 678
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	480, 675
BstMWI	GCNNNNNNNGC	6 cut(s)	181, 380, 419, 817, 839, 932
BstNI	CCWGG	4 cut(s)	207, 419, 756, 851
BstNSI	RCATGY	2 cut(s)	23, 71
BstSCI	CCNGG	4 cut(s)	205, 417, 754, 849
BstSFI	CTRYAG	5 cut(s)	372, 384, 687, 783, 963
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	4 cut(s)	137, 168, 386, 622
BstXI	CCANNNNNNTGG	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	921
BsuRI	GGCC	6 cut(s)	175, 312, 358, 462, 759, 842
BtgI	CCRYGG	1 cut(s)	285
BtsI	GCAGTG	3 cut(s)	378, 774, 821
BtsIMutI	CAGTG	5 cut(s)	210, 378, 769, 774, 821
Cac8I	GCNNGC	2 cut(s)	21, 568
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	50, 242
CsiI	ACCWGGT	1 cut(s)	849
CviAII	CATG	6 cut(s)	16, 20, 68, 166, 286, 959
DdeI	CTNAG	6 cut(s)	299, 318, 493, 761, 942, 987
DpnI	GATC	2 cut(s)	482, 677
DpnII	GATC	2 cut(s)	480, 675
DriI	GACNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	638
Eam1105I	GACNNNNNGTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	638
Eco130I	CCWWGG	5 cut(s)	285, 592, 698, 837, 921
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	50, 242
Eco57I	CTGAAG	4 cut(s)	39, 662, 884, 948
Eco72I	CACGTG	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	4 cut(s)	205, 417, 754, 849
EcoT14I	CCWWGG	5 cut(s)	285, 592, 698, 837, 921
EcoT22I	ATGCAT	1 cut(s)	21
ErhI	CCWWGG	5 cut(s)	285, 592, 698, 837, 921
FaeI	CATG	6 cut(s)	19, 23, 71, 169, 289, 962
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 782, 814
FatI	CATG	6 cut(s)	15, 19, 67, 165, 285, 958
FauI	CCCGC	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	5 cut(s)	126, 182, 375, 489, 636
Fsp4HI	GCNGC	5 cut(s)	126, 182, 375, 489, 636
FspBI	CTAG	4 cut(s)	314, 593, 815, 830
GluI	GCNGC	5 cut(s)	126, 182, 375, 489, 636
GsuI	CTGGAG	2 cut(s)	459, 609
HaeIII	GGCC	6 cut(s)	175, 312, 358, 462, 759, 842
HapII	CCGG	2 cut(s)	80, 267
Hin1II	CATG	6 cut(s)	19, 23, 71, 169, 289, 962
HincII	GTYRAC	2 cut(s)	292, 705
HindII	GTYRAC	2 cut(s)	292, 705
HindIII	AAGCTT	3 cut(s)	446, 530, 791
HinfI	GANTC	5 cut(s)	130, 441, 622, 646, 902
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	80, 267
HphI	GGTGA	2 cut(s)	281, 407
Hpy166II	GTNNAC	4 cut(s)	292, 566, 705, 856
Hpy188I	TCNGA	4 cut(s)	159, 480, 642, 864
Hpy188III	TCNNGA	5 cut(s)	586, 611, 626, 654, 889
Hpy8I	GTNNAC	4 cut(s)	292, 566, 705, 856
HpyAV	CCTTC	5 cut(s)	35, 63, 623, 869, 872
HpyCH4III	ACNGT	3 cut(s)	328, 349, 895
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	6 cut(s)	19, 353, 374, 566, 728, 767
HpyF10VI	GCNNNNNNNGC	6 cut(s)	181, 380, 419, 817, 839, 932
HpyF3I	CTNAG	6 cut(s)	299, 318, 493, 761, 942, 987
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	6 cut(s)	19, 23, 71, 169, 289, 962
Ksp22I	TGATCA	1 cut(s)	480
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	480, 675
LmnI	GCTCC	3 cut(s)	632, 831, 838
Lsp1109I	GCAGC	4 cut(s)	137, 168, 386, 622
LweI	GCATC	2 cut(s)	658, 922
MabI	ACCWGGT	1 cut(s)	849
MaeI	CTAG	4 cut(s)	314, 593, 815, 830
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	4 cut(s)	269, 328, 506, 547
MalI	GATC	2 cut(s)	482, 677
MboI	GATC	2 cut(s)	480, 675
MboII	GAAGA	2 cut(s)	655, 941
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	6 cut(s)	116, 256, 521, 578, 718, 975
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	5 cut(s)	139, 450, 616, 655, 896
MmeI	TCCRAC	1 cut(s)	220
Mox20I	TGGCCA	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	3 cut(s)	62, 291, 722
MslI	CAYNNNNRTG	2 cut(s)	215, 545
Msp20I	TGGCCA	1 cut(s)	462
MspI	CCGG	2 cut(s)	80, 267
MspR9I	CCNGG	4 cut(s)	207, 419, 756, 851
MunI	CAATTG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	4 cut(s)	207, 419, 756, 851
MwoI	GCNNNNNNNGC	6 cut(s)	181, 380, 419, 817, 839, 932
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	480, 675
NlaIII	CATG	6 cut(s)	19, 23, 71, 169, 289, 962
NlaIV	GGNNCC	2 cut(s)	84, 423
NmeAIII	GCCGAG	1 cut(s)	868
NmuCI	GTSAC	4 cut(s)	269, 328, 506, 547
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 71
OliI	CACNNNNGTG	2 cut(s)	215, 545
PaeI	GCATGC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	693
PkrI	GCNGC	5 cut(s)	127, 183, 376, 490, 637
PleI	GAGTC	5 cut(s)	138, 449, 616, 654, 896
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	5 cut(s)	138, 449, 616, 654, 896
Ppu21I	YACGTR	1 cut(s)	547
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	4 cut(s)	205, 417, 754, 849
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	4 cut(s)	205, 417, 754, 849
PspN4I	GGNNCC	2 cut(s)	84, 423
PspPI	GGNCC	2 cut(s)	50, 242
PspPPI	RGGWCCY	1 cut(s)	50
PsrI	GAACNNNNNNTAC	2 cut(s)	839, 871
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	380
RseI	CAYNNNNRTG	2 cut(s)	215, 545
SaqAI	TTAA	3 cut(s)	62, 291, 722
SatI	GCNGC	5 cut(s)	126, 182, 375, 489, 636
Sau3AI	GATC	2 cut(s)	480, 675
Sau96I	GGNCC	2 cut(s)	50, 242
SchI	GAGTC	5 cut(s)	139, 450, 616, 655, 896
ScrFI	CCNGG	4 cut(s)	207, 419, 756, 851
SduI	GDGCHC	1 cut(s)	568
SexAI	ACCWGGT	1 cut(s)	849
SfaNI	GCATC	2 cut(s)	658, 922
SfcI	CTRYAG	5 cut(s)	372, 384, 687, 783, 963
SinI	GGWCC	2 cut(s)	50, 242
SmiMI	CAYNNNNRTG	2 cut(s)	215, 545
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
SpeI	ACTAGT	1 cut(s)	814
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	6 cut(s)	116, 256, 521, 578, 718, 975
SsiI	CCGC	4 cut(s)	221, 489, 498, 515
SspMI	CTAG	4 cut(s)	314, 593, 815, 830
StyD4I	CCNGG	4 cut(s)	205, 417, 754, 849
StyI	CCWWGG	5 cut(s)	285, 592, 698, 837, 921
TaaI	ACNGT	3 cut(s)	328, 349, 895
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	612, 900
TasI	AATT	6 cut(s)	116, 256, 521, 578, 718, 975
TauI	GCSGC	1 cut(s)	491
Tru1I	TTAA	3 cut(s)	62, 291, 722
Tru9I	TTAA	3 cut(s)	62, 291, 722
TscAI	CASTG	5 cut(s)	217, 385, 769, 774, 828
TseFI	GTSAC	4 cut(s)	269, 328, 506, 547
TseI	GCWGC	4 cut(s)	125, 181, 374, 635
Tsp45I	GTSAC	4 cut(s)	269, 328, 506, 547
TspDTI	ATGAA	2 cut(s)	117, 128
TspGWI	ACGGA	1 cut(s)	673
TspRI	CASTG	5 cut(s)	217, 385, 769, 774, 828
VneI	GTGCAC	1 cut(s)	564
VpaK11BI	GGWCC	2 cut(s)	50, 242
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	2 cut(s)	256, 578
XceI	RCATGY	2 cut(s)	23, 71
XmaJI	CCTAGG	1 cut(s)	592
XspI	CTAG	4 cut(s)	314, 593, 815, 830
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.