Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001574.1

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

28273 .. 34246

Gene Structure 5974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001574.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3594 bp

atggagccggacgtgagcatcgaaaccagctccatgatccgcgtggcggtcctccccatcggccacgtgcccccggtcctcctgcgcgactaccactccatgctactccgccaccagtcgatccctctctccgccgtcagctccttctacaccgagcaccagaagtcgcccttcgctcaccagccctgggactccggcagcctccgcttcaagttcgtcctcggcggcgcccctcccagcccctgggaggacttccagtccaaccgcaaaacccttgccgtcatcggaatctgccactgcccttcctccccggatctcggctccgtcatggatcaattcgattcggcctgtagagcctaccctgccgcactcgtcgaacgctgctttgccttctgccccgccgattctcagttggaggatgggagtaagaaagggtggaacctgatgctgttcccaccggcggatcgggccacacaggagtttcacttgcaaacgatgatgcaagacatagcggcctcattgctaatggagtttgagaaatgggtgcttaaggctgagcctgcggggactattgtcaagacgcctttggattctcaagctactctcaactcagaggaggttataaaggcgaagaaacggaggcttgggcgtgcacagaaggctatgggtgattattgcttgttggcaggatcaccggttgatgccaatcttcattactctactgcattggaacttgctaggttgaccggagattttttttggtatgctggtgcattggagggaatcgtttgtgcattactgattgatcgaatgggccaaaaggatacagccgtggaagatgaagttagatatcggtatagtagtgtcattttgcactacaggaagtcgttcatacaagagaatgctcagagagtttcacccttaacatttgaacttgaggctactttgaaattggcaaggtttctttgcagacgtgagctggctaaagaggtagtggagctactaacaaatgcagcagatggtgcgaaatctctgattgatgccagtgatagacttgtactttatgttgaaatagctcgtttatatggaactctcggttatcagcgaaaagctgcctttttctcaaggcaggtagctcagttatatttgcaacaagataatagactggctgccattagtgcaatgcaagttttggcaatgaccacaaaagcatatcgtgttcaaagtaaagcttcaaccttagaagattctcttcccaaaaaggaaactggatcaagtgttgttgagggtgggaaaatgctccatcagtcggtagtctctctatttgagtctcagtggagcacattacagatggttgtactaagggaaatcctgctatctgctgtccgagcaggagatcctcttgctgcgtggggtgcagctgcaagactactaagatcatattatcctttaattacacctgctgggcaaaatggccttgctagtgcactttccaattcagcggatcggttgccatcaggaactcgctgtgctgaccctgccttacctttcattaggttgtattcttttcctctccatccctcacaaatggacattgtaaagcgcaatcctgcaagagaagactggtgggctggagctgctaatactgggccttttatttatacgccattcagcaagggagagccaagcaataacagcaaacaggagctgatttggattgttggagaaccagttcagattttggtggaactggcaaacccatgcggctttgatttgagggtcgatagtatatatctctctgtgccttcaggaaattttgatgcttttccagtcactgtaaatcttccacccaattcatcaaaggtggtcactttatcagggatcccaacttcagtggggccagtgacaattcctggttgcaccgtccactgctttggtgttattactgaacacctgtttaaggatgttgacaatctactccttggagctacacaaggacttgttctttctgaccctttcagatgttgtgggtctgcaaggttgaaaaatatatctgttccaagtatttctgtagtaccgccactgccattactggtttcacgtgttgttggtggtgatggtgcaatcattctacacgaaggtgaaattcgtgatatatggataagtctggctaatgctggtacagttccagttgagcaagtccatgtatcgctatctggaaaacaccaagattctgttctctttattgcatctgaaaccttaaaatcttcccttcccttgaggcctggagcagaagtgacaattcctgtgactttaaaagcttggcgaattgtcttagcggatgcagatactgctgctggcaggagtgcctttaagcactctaaggatggaaatagccccacattgttgatccattatgcagggactctgccaaatactggagatccttcaacagaaaagtctgttgtcccacctggcagacgcctggttgttcctttgcagatttgtgttttgcaaggtttgtcttttgtaaaggctcgtctgctctcgatggagattcctgcacaagtaggtgaaaaccttccgaagccagttcatattgacaatagtcttactgaaggagctgtgggcactccaaataagatggacagattggtgaaaattgatccttttagaggaagctggggactacgcttccttgaacttgagttgtctaatccaactgatgttgtctttgaaattagtgtttcagtccaactggagaacactgatcatgagcatagcctctccatcgatcgagatgctactgagtatggttaccctaaaacaagaattgatcgagattgttctgcgagggtactgataccactggagcattttaaattgcctgttcttgatgattctttttttgtaaaagataatcaagctgatgggagtggcagaagttatagcttttcagaaaggaatacgaaagctgaacttaatgcctctatcaagaaccttatatctagaataaaggttaggtggcaatcagggcgaaacagctctggagaattaaatatcaaggatgctgtacaggctgcccttcagacatctgttatggatgtactgctgccagacccattaacattttgcttcaggctttccagaaatggccctggacctgaaaatattgattcccatgaagaatccaatgatcaagttgactcttctgcttctaaaggatctgtgatggcgcatgaaatgactccaatggaagttatggttcgtaacaacacaaaggaattaatcaagatgagtcttaacgttgtgtgcagagatgttgcgggagaggattgtgtagagtgtgcaaatgcaactgtcttatgttctggtgttttgggtgggataaccatggaggttccaccgcttgaagaaatcaagcattctttctctttgtattttctcgtccccggggagtacacactaatagcggctgccatgatcgaagatgctaatgatatcctcagggctcgtgcaagaaccaaatcctctgatgagccgatcttctgtcgtggccctccatatcatgtccgggttgttggcactgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1197

Amino Acids

131.0

Weight (kDa)

6.06

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	1 cut(s)	1468
Acc36I	ACCTGC	2 cut(s)	1120, 1468
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	243, 2438
AccII	CGCG	2 cut(s)	42, 87
AclI	AACGTT	1 cut(s)	3306
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	1813, 2145
AcuI	CTGAAG	5 cut(s)	1791, 1875, 2637, 3071, 3121
AcvI	CACGTG	2 cut(s)	67, 2102
AcyI	GRCGYC	3 cut(s)	228, 581, 2482
AfaI	GTAC	8 cut(s)	1059, 1359, 2076, 2182, 2859, 3075, 3108, 3461
AflII	CTTAAG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	2101
AgeI	ACCGGT	1 cut(s)	694
AhdI	GACNNNNNGTC	1 cut(s)	256
AjiI	CACGTC	2 cut(s)	13, 974
AjnI	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
AjuI	GAANNNNNNNTTGG	2 cut(s)	2220, 2252
AleI	CACNNNNGTG	1 cut(s)	2139
AloI	GAACNNNNNNTCC	2 cut(s)	1716, 1748
Alw21I	GWGCWC	4 cut(s)	159, 655, 1343, 1489
Alw26I	GTCTC	2 cut(s)	1321, 1335
Alw44I	GTGCAC	2 cut(s)	651, 1485
AlwNI	CAGNNNCTG	4 cut(s)	243, 1708, 1835, 2351
Ama87I	CYCGRG	1 cut(s)	3452
ApaLI	GTGCAC	2 cut(s)	651, 1485
ApoI	RAATTY	2 cut(s)	1813, 2145
AseI	ATTAAT	1 cut(s)	3287
AsiGI	ACCGGT	1 cut(s)	694
Asp700I	GAANNNNTTC	3 cut(s)	887, 1731, 2580
AspLEI	GCGC	4 cut(s)	87, 230, 1605, 3238
AspS9I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
AsuC2I	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
AsuHPI	GGTGA	8 cut(s)	170, 680, 684, 909, 2126, 2153, 2585, 2668
AvaI	CYCGRG	1 cut(s)	3452
AvaII	GGWCC	3 cut(s)	49, 76, 3161
AxyI	CCTNAGG	1 cut(s)	3506
BaeGI	GKGCMC	4 cut(s)	72, 655, 1489, 2633
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BamHI	GGATCC	1 cut(s)	1881
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	3514
BauI	CACGAG	1 cut(s)	3513
BbrPI	CACGTG	2 cut(s)	67, 2102
BbsI	GAAGAC	1 cut(s)	1626
Bbv12I	GWGCWC	4 cut(s)	159, 655, 1343, 1489
BceAI	ACGGC	3 cut(s)	119, 263, 815
BcgI	CGANNNNNNTGC	2 cut(s)	2783, 2817
BciT130I	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	2 cut(s)	2770, 3196
BcnI	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
BcoDI	GTCTC	2 cut(s)	1321, 1335
BfaI	CTAG	3 cut(s)	738, 1482, 3009
BfmI	CTRYAG	3 cut(s)	349, 877, 2070
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	2 cut(s)	1120, 1468
BfuI	GTATCC	1 cut(s)	817
BlpI	GCTNAGC	1 cut(s)	555
Bme18I	GGWCC	3 cut(s)	49, 76, 3161
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	3452
BmgBI	CACGTC	2 cut(s)	13, 974
BmgT120I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
BmiI	GGNNCC	7 cut(s)	6, 229, 322, 440, 1883, 1899, 3402
BmrI	ACTGGG	1 cut(s)	1656
BmuI	ACTGGG	1 cut(s)	1656
BoxI	GACNNNNGTC	2 cut(s)	572, 2607
BpiI	GAAGAC	1 cut(s)	1626
BpmI	CTGGAG	6 cut(s)	1653, 2307, 2460, 2780, 2891, 3069
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	5 cut(s)	579, 956, 1108, 2299, 2726
BpuMI	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
Bsa29I	ATCGAT	1 cut(s)	2793
BsaAI	YACGTR	2 cut(s)	67, 2102
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	228, 581, 2482
BsaWI	WCCGGW	2 cut(s)	694, 746
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 1716, 1746, 2280, 2310
Bse118I	RCCGGY	2 cut(s)	457, 694
Bse21I	CCTNAGG	1 cut(s)	3506
Bse3DI	GCAATG	3 cut(s)	518, 1188, 1203
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
BseCI	ATCGAT	1 cut(s)	2793
BseGI	GGATG	7 cut(s)	424, 1576, 1969, 2347, 2392, 3073, 3109
BseJI	GATNNNNATC	1 cut(s)	705
BseMI	GCAATG	3 cut(s)	518, 1188, 1203
BseMII	CTCAG	8 cut(s)	422, 546, 624, 920, 1151, 1346, 2799, 3520
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	4 cut(s)	72, 655, 1489, 2633
BseYI	CCCAGC	3 cut(s)	236, 1463, 2682
BsgI	GTGCAG	3 cut(s)	1437, 2547, 3334
Bsh1236I	CGCG	2 cut(s)	42, 87
Bsh1285I	CGRYCG	1 cut(s)	2797
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	694
BshVI	ATCGAT	1 cut(s)	2793
BsiEI	CGRYCG	1 cut(s)	2797
BsiHKAI	GWGCWC	4 cut(s)	159, 655, 1343, 1489
BsiHKCI	CYCGRG	1 cut(s)	3452
BsiSI	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
BslFI	GGGAC	6 cut(s)	203, 580, 2437, 2453, 2700, 3434
BsmAI	GTCTC	2 cut(s)	1321, 1335
BsmFI	GGGAC	6 cut(s)	203, 580, 2437, 2453, 2700, 3434
BsmI	GAATGC	2 cut(s)	907, 3424
BsoBI	CYCGRG	1 cut(s)	3452
Bsp1286I	GDGCHC	7 cut(s)	72, 159, 655, 1343, 1489, 2633, 3514
Bsp1407I	TGTACA	1 cut(s)	3073
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	3393
BspCNI	CTCAG	8 cut(s)	421, 547, 623, 919, 1150, 1345, 2800, 3519
BspDI	ATCGAT	1 cut(s)	2793
BspFNI	CGCG	2 cut(s)	42, 87
BspHI	TCATGA	1 cut(s)	2773
BspLI	GGNNCC	7 cut(s)	6, 229, 322, 440, 1883, 1899, 3402
BspMI	ACCTGC	2 cut(s)	1120, 1468
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	518, 1188, 1203
BsrFI	RCCGGY	2 cut(s)	457, 694
BsrGI	TGTACA	1 cut(s)	3073
BssAI	RCCGGY	2 cut(s)	457, 694
BssNI	GRCGYC	3 cut(s)	228, 581, 2482
BssSI	CACGAG	1 cut(s)	3513
BssT1I	CCWWGG	2 cut(s)	1981, 3393
Bst2BI	CACGAG	1 cut(s)	3513
Bst2UI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
Bst4CI	ACNGT	4 cut(s)	1837, 1924, 2185, 3361
Bst6I	CTCTTC	2 cut(s)	1257, 3214
BstACI	GRCGYC	3 cut(s)	228, 581, 2482
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	2 cut(s)	1022, 2351
BstAUI	TGTACA	1 cut(s)	3073
BstBAI	YACGTR	2 cut(s)	67, 2102
BstC8I	GCNNGC	4 cut(s)	561, 651, 981, 2359
BstDSI	CCRYGG	2 cut(s)	831, 3393
BstEII	GGTNACC	1 cut(s)	2816
BstENI	CCTNNNNNAGG	2 cut(s)	1958, 2673
BstF5I	GGATG	7 cut(s)	424, 1576, 1969, 2347, 2392, 3073, 3109
BstFNI	CGCG	2 cut(s)	42, 87
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	4 cut(s)	87, 230, 1605, 3238
BstMAI	GTCTC	2 cut(s)	1321, 1335
BstMCI	CGRYCG	1 cut(s)	2797
BstNI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
BstPAI	GACNNNNGTC	2 cut(s)	572, 2607
BstPI	GGTNACC	1 cut(s)	2816
BstSFI	CTRYAG	3 cut(s)	349, 877, 2070
BstSLI	GKGCMC	4 cut(s)	72, 655, 1489, 2633
BstUI	CGCG	2 cut(s)	42, 87
BstV2I	GAAGAC	1 cut(s)	1626
BstX2I	RGATCY	5 cut(s)	313, 1396, 1881, 2443, 3224
BstXI	CCANNNNNNTGG	1 cut(s)	1934
BstYI	RGATCY	5 cut(s)	313, 1396, 1881, 2443, 3224
Bsu15I	ATCGAT	1 cut(s)	2793
Bsu36I	CCTNAGG	1 cut(s)	3506
BsuI	GTATCC	1 cut(s)	817
BsuTUI	ATCGAT	1 cut(s)	2793
BtgI	CCRYGG	2 cut(s)	831, 3393
BtrI	CACGTC	2 cut(s)	13, 974
BtsCI	GGATG	7 cut(s)	424, 1576, 1969, 2347, 2392, 3073, 3109
BtsI	GCAGTG	4 cut(s)	295, 1927, 2081, 3585
BveI	ACCTGC	2 cut(s)	1120, 1468
Cac8I	GCNNGC	4 cut(s)	561, 651, 981, 2359
CaiI	CAGNNNCTG	4 cut(s)	243, 1708, 1835, 2351
CciI	TCATGA	1 cut(s)	2773
CfoI	GCGC	4 cut(s)	87, 230, 1605, 3238
Cfr10I	RCCGGY	2 cut(s)	457, 694
Cfr13I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
Cfr9I	CCCGGG	1 cut(s)	3452
ClaI	ATCGAT	1 cut(s)	2793
CseI	GACGC	2 cut(s)	589, 2490
Csp6I	GTAC	8 cut(s)	1058, 1358, 2075, 2181, 2858, 3074, 3107, 3460
CspAI	ACCGGT	1 cut(s)	694
CspCI	CAANNNNNGTGG	2 cut(s)	1875, 1910
CviQI	GTAC	8 cut(s)	1058, 1358, 2075, 2181, 2858, 3074, 3107, 3460
DinI	GGCGCC	1 cut(s)	229
DraI	TTTAAA	2 cut(s)	2316, 2881
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	1257, 3214
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	2 cut(s)	1257, 3214
EciI	GGCGGA	3 cut(s)	98, 121, 476
Eco130I	CCWWGG	2 cut(s)	1981, 3393
Eco147I	AGGCCT	1 cut(s)	2284
Eco24I	GRGCYC	1 cut(s)	3514
Eco32I	GATATC	2 cut(s)	851, 3502
Eco47I	GGWCC	3 cut(s)	49, 76, 3161
Eco57I	CTGAAG	5 cut(s)	1791, 1875, 2637, 3071, 3121
Eco72I	CACGTG	2 cut(s)	67, 2102
Eco81I	CCTNAGG	1 cut(s)	3506
Eco88I	CYCGRG	1 cut(s)	3452
Eco91I	GGTNACC	1 cut(s)	2816
EcoNI	CCTNNNNNAGG	2 cut(s)	1958, 2673
EcoO65I	GGTNACC	1 cut(s)	2816
EcoRII	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
EcoRV	GATATC	2 cut(s)	851, 3502
EcoT14I	CCWWGG	2 cut(s)	1981, 3393
EcoT38I	GRGCYC	1 cut(s)	3514
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	2 cut(s)	1981, 3393
FalI	AAGNNNNNCTT	8 cut(s)	155, 187, 1216, 1248, 1236, 1268, 2964, 2996
FaqI	GGGAC	6 cut(s)	203, 580, 2437, 2453, 2700, 3434
FauI	CCCGC	3 cut(s)	406, 556, 3319
FbaI	TGATCA	2 cut(s)	2770, 3196
FokI	GGATG	7 cut(s)	431, 1563, 1976, 2354, 2399, 3080, 3116
FriOI	GRGCYC	1 cut(s)	3514
FspBI	CTAG	3 cut(s)	738, 1482, 3009
GlaI	GCGC	4 cut(s)	86, 229, 1604, 3237
GsaI	CCCAGC	3 cut(s)	240, 1467, 2686
GsuI	CTGGAG	6 cut(s)	1653, 2307, 2460, 2780, 2891, 3069
HaeII	RGCGCY	1 cut(s)	231
HapII	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
HgaI	GACGC	2 cut(s)	589, 2490
HhaI	GCGC	4 cut(s)	87, 230, 1605, 3238
Hin1I	GRCGYC	3 cut(s)	228, 581, 2482
Hin6I	GCGC	4 cut(s)	85, 228, 1603, 3236
HinP1I	GCGC	4 cut(s)	85, 228, 1603, 3236
HincII	GTYRAC	3 cut(s)	744, 1969, 3205
HindII	GTYRAC	3 cut(s)	744, 1969, 3205
HindIII	AAGCTT	2 cut(s)	1230, 2319
HpaII	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
HphI	GGTGA	8 cut(s)	170, 680, 684, 909, 2126, 2153, 2585, 2668
Hpy166II	GTNNAC	7 cut(s)	653, 744, 1487, 1927, 1969, 3205, 3462
Hpy8I	GTNNAC	7 cut(s)	653, 744, 1487, 1927, 1969, 3205, 3462
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	4 cut(s)	1837, 1924, 2185, 3361
HpyCH4IV	ACGT	5 cut(s)	12, 66, 973, 2101, 3306
HpySE526I	ACGT	5 cut(s)	12, 66, 973, 2101, 3306
Hsp92I	GRCGYC	3 cut(s)	228, 581, 2482
HspAI	GCGC	4 cut(s)	85, 228, 1603, 3236
KasI	GGCGCC	1 cut(s)	227
Ksp22I	TGATCA	2 cut(s)	2770, 3196
MaeI	CTAG	3 cut(s)	738, 1482, 3009
MaeII	ACGT	5 cut(s)	12, 66, 973, 2101, 3306
MaeIII	GTNAC	7 cut(s)	1831, 1867, 1903, 2296, 2308, 2816, 3269
MflI	RGATCY	5 cut(s)	313, 1396, 1881, 2443, 3224
MhlI	GDGCHC	7 cut(s)	72, 159, 655, 1343, 1489, 2633, 3514
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	6 cut(s)	185, 1337, 2419, 3200, 3241, 3307
MmeI	TCCRAC	5 cut(s)	285, 393, 1702, 2744, 2779
MroXI	GAANNNNTTC	3 cut(s)	887, 1731, 2580
MslI	CAYNNNNRTG	1 cut(s)	2139
MspA1I	CMGCKG	2 cut(s)	1421, 1502
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
Mva1269I	GAATGC	2 cut(s)	907, 3424
MvaI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
MvnI	CGCG	2 cut(s)	42, 87
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
NcoI	CCATGG	1 cut(s)	3393
NlaIV	GGNNCC	7 cut(s)	6, 229, 322, 440, 1883, 1899, 3402
NmeAIII	GCCGAG	2 cut(s)	201, 297
NmuCI	GTSAC	5 cut(s)	1831, 1867, 1903, 2296, 2308
OliI	CACNNNNGTG	1 cut(s)	2139
PagI	TCATGA	1 cut(s)	2773
PaqCI	CACCTGC	1 cut(s)	1468
PasI	CCCWGGG	2 cut(s)	186, 243
PceI	AGGCCT	1 cut(s)	2284
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	2 cut(s)	907, 3424
PdmI	GAANNNNTTC	3 cut(s)	887, 1731, 2580
PflMI	CCANNNNNTGG	2 cut(s)	243, 2438
PinAI	ACCGGT	1 cut(s)	694
Ple19I	CGATCG	1 cut(s)	2797
PleI	GAGTC	6 cut(s)	185, 1336, 2419, 3200, 3241, 3306
PluTI	GGCGCC	1 cut(s)	231
PmaCI	CACGTG	2 cut(s)	67, 2102
PmlI	CACGTG	2 cut(s)	67, 2102
PpsI	GAGTC	6 cut(s)	185, 1336, 2419, 3200, 3241, 3306
Ppu21I	YACGTR	2 cut(s)	67, 2102
PshAI	GACNNNNGTC	2 cut(s)	572, 2607
PshBI	ATTAAT	1 cut(s)	3287
PsiI	TTATAA	1 cut(s)	623
Psp1406I	AACGTT	1 cut(s)	3306
Psp6I	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
PspCI	CACGTG	2 cut(s)	67, 2102
PspEI	GGTNACC	1 cut(s)	2816
PspFI	CCCAGC	3 cut(s)	236, 1463, 2682
PspGI	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
PspN4I	GGNNCC	7 cut(s)	6, 229, 322, 440, 1883, 1899, 3402
PspPI	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
PstNI	CAGNNNCTG	4 cut(s)	243, 1708, 1835, 2351
PsuI	RGATCY	5 cut(s)	313, 1396, 1881, 2443, 3224
PvuI	CGATCG	1 cut(s)	2797
PvuII	CAGCTG	1 cut(s)	1421
RsaI	GTAC	8 cut(s)	1059, 1359, 2076, 2182, 2859, 3075, 3108, 3461
RsaNI	GTAC	8 cut(s)	1058, 1358, 2075, 2181, 2858, 3074, 3107, 3460
RseI	CAYNNNNRTG	1 cut(s)	2139
Sau96I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
SchI	GAGTC	6 cut(s)	185, 1337, 2419, 3200, 3241, 3307
SduI	GDGCHC	7 cut(s)	72, 159, 655, 1343, 1489, 2633, 3514
SfcI	CTRYAG	3 cut(s)	349, 877, 2070
SfoI	GGCGCC	1 cut(s)	229
SgrAI	CRCCGGYG	1 cut(s)	457
SinI	GGWCC	3 cut(s)	49, 76, 3161
SmaI	CCCGGG	1 cut(s)	3454
SmiMI	CAYNNNNRTG	1 cut(s)	2139
SmlI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2278, 2705
SmoI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2278, 2705
SseBI	AGGCCT	1 cut(s)	2284
SspDI	GGCGCC	1 cut(s)	227
SspI	AATATT	1 cut(s)	3172
SspMI	CTAG	3 cut(s)	738, 1482, 3009
StuI	AGGCCT	1 cut(s)	2284
StyI	CCWWGG	2 cut(s)	1981, 3393
TaaI	ACNGT	4 cut(s)	1837, 1924, 2185, 3361
TaiI	ACGT	5 cut(s)	15, 69, 976, 2104, 3309
TatI	WGTACW	5 cut(s)	1057, 1357, 3073, 3106, 3459
TauI	GCSGC	5 cut(s)	228, 368, 515, 1767, 3476
TseFI	GTSAC	5 cut(s)	1831, 1867, 1903, 2296, 2308
Tsp45I	GTSAC	5 cut(s)	1831, 1867, 1903, 2296, 2308
TspDTI	ATGAA	8 cut(s)	701, 855, 880, 1540, 1845, 2585, 3198, 3255
TspGWI	ACGGA	2 cut(s)	313, 652
TspMI	CCCGGG	1 cut(s)	3452
Van91I	CCANNNNNTGG	2 cut(s)	243, 2438
Vha464I	CTTAAG	1 cut(s)	548
VneI	GTGCAC	2 cut(s)	651, 1485
VpaK11BI	GGWCC	3 cut(s)	49, 76, 3161
VspI	ATTAAT	1 cut(s)	3287
XagI	CCTNNNNNAGG	2 cut(s)	1958, 2673
XapI	RAATTY	2 cut(s)	1813, 2145
XbaI	TCTAGA	1 cut(s)	3008
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	3452
XmnI	GAANNNNTTC	3 cut(s)	887, 1731, 2580
XspI	CTAG	3 cut(s)	738, 1482, 3009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.