trafficking protein particle complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G11040 |
| fragaria_vesca | FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 |
| malus_domestica | MD15G1131100.v1.1 |
| prunus_persica | Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 |
| pyrus_communis | pycom08g13320 pycom15g11820 |
| rosa_chinensis | RchiOBHm_Chr6g0297201 |
| rosa_laevigata | RLG00000011622 |
| rosa_multiflora | Rmu_sc0001574.1_g000007 |
| rosa_roxburghii | Rroxscaffold_7G00170790 |
| rosa_rugosa | Rorug06G0269800 Rorug06G0269900 Rorug06G0269900 |
| rosa_samantha | Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900 |
| rosa_wichuraiana | Rw6G033170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 623 |
| AatII | GACGTC | 1 cut(s) | 15 |
| Acc16I | TGCGCA | 1 cut(s) | 2571 |
| Acc36I | ACCTGC | 2 cut(s) | 1120, 2165 |
| Acc65I | GGTACC | 1 cut(s) | 2071 |
| AccB1I | GGYRCC | 2 cut(s) | 2071, 2487 |
| AccBSI | CCGCTC | 1 cut(s) | 3393 |
| AccII | CGCG | 3 cut(s) | 42, 87, 3525 |
| AcoI | YGGCCR | 1 cut(s) | 61 |
| AcsI | RAATTY | 6 cut(s) | 1365, 1492, 1810, 2142, 2953, 3178 |
| AcuI | CTGAAG | 4 cut(s) | 1788, 2643, 3080, 3130 |
| AcvI | CACGTG | 2 cut(s) | 67, 2099 |
| AcyI | GRCGYC | 4 cut(s) | 12, 515, 581, 2488 |
| AfaI | GTAC | 7 cut(s) | 1356, 2073, 2179, 2862, 3117, 3358, 3470 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 46, 247, 1282, 1888, 1957, 2484, 2678 |
| AflII | CTTAAG | 1 cut(s) | 2311 |
| AflIII | ACRYGT | 2 cut(s) | 2098, 2200 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 256 |
| AjnI | CCWGG | 7 cut(s) | 242, 1406, 1909, 2281, 2479, 2490, 3460 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1713, 1745 |
| Alw21I | GWGCWC | 4 cut(s) | 159, 1340, 1486, 1919 |
| Alw26I | GTCTC | 4 cut(s) | 312, 1035, 1318, 1332 |
| Alw44I | GTGCAC | 2 cut(s) | 1482, 1915 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1634, 1705, 1832, 2022, 2180, 2348 |
| Ama87I | CYCGRG | 2 cut(s) | 1123, 1513 |
| AoxI | GGCC | 8 cut(s) | 61, 228, 1471, 1646, 2279, 2429, 3483, 3566 |
| ApaI | GGGCCC | 2 cut(s) | 232, 3570 |
| ApaLI | GTGCAC | 2 cut(s) | 1482, 1915 |
| ApoI | RAATTY | 6 cut(s) | 1365, 1492, 1810, 2142, 2953, 3178 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1368, 1728, 2586 |
| Asp718I | GGTACC | 1 cut(s) | 2071 |
| AspLEI | GCGC | 7 cut(s) | 87, 1602, 2490, 2572, 2697, 3247, 3527 |
| AspS9I | GGNCC | 7 cut(s) | 49, 228, 229, 1646, 2429, 3566, 3567 |
| AsuC2I | CCSGG | 1 cut(s) | 399 |
| AsuHPI | GGTGA | 8 cut(s) | 680, 684, 909, 2123, 2150, 2591, 2671, 3502 |
| AvaI | CYCGRG | 2 cut(s) | 1123, 1513 |
| AvaII | GGWCC | 1 cut(s) | 49 |
| BaeGI | GKGCMC | 6 cut(s) | 72, 232, 655, 1486, 1919, 3570 |
| BamHI | GGATCC | 1 cut(s) | 1878 |
| BanI | GGYRCC | 2 cut(s) | 2071, 2487 |
| BanII | GRGCYC | 3 cut(s) | 232, 3523, 3570 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2283, 2315 |
| BbrPI | CACGTG | 2 cut(s) | 67, 2099 |
| BbsI | GAAGAC | 3 cut(s) | 665, 1248, 1623 |
| Bbv12I | GWGCWC | 4 cut(s) | 159, 1340, 1486, 1919 |
| BbvCI | CCTCAGC | 1 cut(s) | 1281 |
| BceAI | ACGGC | 4 cut(s) | 263, 336, 1364, 3546 |
| BciT130I | CCWGG | 7 cut(s) | 244, 1408, 1911, 2283, 2481, 2492, 3462 |
| BciVI | GTATCC | 1 cut(s) | 992 |
| BclI | TGATCA | 1 cut(s) | 2779 |
| BcnI | CCSGG | 1 cut(s) | 399 |
| BcoDI | GTCTC | 4 cut(s) | 312, 1035, 1318, 1332 |
| BfaI | CTAG | 7 cut(s) | 275, 728, 738, 935, 1479, 3156, 3183 |
| BfmI | CTRYAG | 5 cut(s) | 561, 877, 1343, 2349, 3222 |
| BfoI | RGCGCY | 1 cut(s) | 2491 |
| BfrI | CTTAAG | 1 cut(s) | 2311 |
| BfuAI | ACCTGC | 2 cut(s) | 1120, 2165 |
| BfuI | GTATCC | 1 cut(s) | 992 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1412 |
| BlpI | GCTNAGC | 1 cut(s) | 555 |
| Bme1390I | CCNGG | 8 cut(s) | 244, 399, 1408, 1911, 2283, 2481, 2492, 3462 |
| Bme18I | GGWCC | 1 cut(s) | 49 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 256 |
| BmeT110I | CYCGRG | 2 cut(s) | 1123, 1513 |
| BmgT120I | GGNCC | 7 cut(s) | 49, 228, 229, 1646, 2429, 3566, 3567 |
| BmrFI | CCNGG | 8 cut(s) | 244, 399, 1408, 1911, 2283, 2481, 2492, 3462 |
| BmrI | ACTGGG | 1 cut(s) | 1653 |
| BmuI | ACTGGG | 1 cut(s) | 1653 |
| BoxI | GACNNNNGTC | 1 cut(s) | 572 |
| BpiI | GAAGAC | 3 cut(s) | 665, 1248, 1623 |
| BpmI | CTGGAG | 7 cut(s) | 98, 768, 2388, 2783, 2814, 2894, 3357 |
| Bpu10I | CCTNAGC | 3 cut(s) | 984, 1281, 3228 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 555 |
| BpuEI | CTTGAG | 2 cut(s) | 579, 2729 |
| BpuMI | CCSGG | 1 cut(s) | 399 |
| Bsa29I | ATCGAT | 1 cut(s) | 3495 |
| BsaAI | YACGTR | 2 cut(s) | 67, 2099 |
| BsaHI | GRCGYC | 4 cut(s) | 12, 515, 581, 2488 |
| BsaWI | WCCGGW | 1 cut(s) | 204 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1713, 1743, 2361, 2391 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 46, 247, 1282, 1888, 1957, 2484, 2678 |
| Bse3DI | GCAATG | 3 cut(s) | 1188, 1203, 2084 |
| BseBI | CCWGG | 7 cut(s) | 244, 1408, 1911, 2283, 2481, 2492, 3462 |
| BseCI | ATCGAT | 1 cut(s) | 3495 |
| BseGI | GGATG | 6 cut(s) | 424, 1573, 1966, 2398, 3082, 3118 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 46, 247, 1282, 1888, 1957, 2484, 2678 |
| BseMI | GCAATG | 3 cut(s) | 1188, 1203, 2084 |
| BseRI | GAGGAG | 1 cut(s) | 629 |
| BseSI | GKGCMC | 6 cut(s) | 72, 232, 655, 1486, 1919, 3570 |
| BseYI | CCCAGC | 1 cut(s) | 1460 |
| BsgI | GTGCAG | 4 cut(s) | 708, 1032, 1407, 2307 |
| Bsh1236I | CGCG | 3 cut(s) | 42, 87, 3525 |
| Bsh1285I | CGRYCG | 1 cut(s) | 379 |
| BshFI | GGCC | 8 cut(s) | 63, 230, 1473, 1648, 2281, 2431, 3485, 3568 |
| BshNI | GGYRCC | 2 cut(s) | 2071, 2487 |
| BshVI | ATCGAT | 1 cut(s) | 3495 |
| BsiEI | CGRYCG | 1 cut(s) | 379 |
| BsiHKAI | GWGCWC | 4 cut(s) | 159, 1340, 1486, 1919 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1123, 1513 |
| BsiSI | CCGG | 4 cut(s) | 8, 195, 205, 399 |
| BslFI | GGGAC | 7 cut(s) | 151, 203, 223, 580, 1909, 2703, 3443 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 46, 247, 1282, 1888, 1957, 2484, 2678 |
| BsmAI | GTCTC | 4 cut(s) | 312, 1035, 1318, 1332 |
| BsmBI | CGTCTC | 1 cut(s) | 312 |
| BsmFI | GGGAC | 7 cut(s) | 151, 203, 223, 580, 1909, 2703, 3443 |
| BsmI | GAATGC | 2 cut(s) | 2383, 3433 |
| BsnI | GGCC | 8 cut(s) | 63, 230, 1473, 1648, 2281, 2431, 3485, 3568 |
| BsoBI | CYCGRG | 2 cut(s) | 1123, 1513 |
| Bsp120I | GGGCCC | 2 cut(s) | 228, 3566 |
| Bsp1286I | GDGCHC | 9 cut(s) | 72, 159, 232, 655, 1340, 1486, 1919, 3523, 3570 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 555 |
| Bsp19I | CCATGG | 1 cut(s) | 185 |
| BspANI | GGCC | 8 cut(s) | 63, 230, 1473, 1648, 2281, 2431, 3485, 3568 |
| BspDI | ATCGAT | 1 cut(s) | 3495 |
| BspFNI | CGCG | 3 cut(s) | 42, 87, 3525 |
| BspHI | TCATGA | 2 cut(s) | 2146, 2776 |
| BspMAI | CTGCAG | 3 cut(s) | 565, 2353, 3226 |
| BspMI | ACCTGC | 2 cut(s) | 1120, 2165 |
| BspT107I | GGYRCC | 2 cut(s) | 2071, 2487 |
| BspTI | CTTAAG | 1 cut(s) | 2311 |
| BsrBI | CCGCTC | 1 cut(s) | 3393 |
| BsrDI | GCAATG | 3 cut(s) | 1188, 1203, 2084 |
| BssNI | GRCGYC | 4 cut(s) | 12, 515, 581, 2488 |
| BssT1I | CCWWGG | 2 cut(s) | 185, 1978 |
| Bst2UI | CCWGG | 7 cut(s) | 244, 1408, 1911, 2283, 2481, 2492, 3462 |
| Bst4CI | ACNGT | 9 cut(s) | 237, 1834, 1900, 1921, 2117, 2182, 2377, 2749, 3370 |
| BstACI | GRCGYC | 4 cut(s) | 12, 515, 581, 2488 |
| BstAFI | CTTAAG | 1 cut(s) | 2311 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1022, 1634, 2348, 3321 |
| BstBAI | YACGTR | 2 cut(s) | 67, 2099 |
| BstDSI | CCRYGG | 2 cut(s) | 185, 3562 |
| BstEII | GGTNACC | 2 cut(s) | 690, 2819 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1280, 1955, 2676 |
| BstF5I | GGATG | 6 cut(s) | 424, 1573, 1966, 2398, 3082, 3118 |
| BstFNI | CGCG | 3 cut(s) | 42, 87, 3525 |
| BstH2I | RGCGCY | 1 cut(s) | 2491 |
| BstHHI | GCGC | 7 cut(s) | 87, 1602, 2490, 2572, 2697, 3247, 3527 |
| BstMAI | GTCTC | 4 cut(s) | 312, 1035, 1318, 1332 |
| BstMCI | CGRYCG | 1 cut(s) | 379 |
| BstNI | CCWGG | 7 cut(s) | 244, 1408, 1911, 2283, 2481, 2492, 3462 |
| BstNSI | RCATGY | 4 cut(s) | 905, 2204, 2330, 3324 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 572 |
| BstPI | GGTNACC | 2 cut(s) | 690, 2819 |
| BstSCI | CCNGG | 8 cut(s) | 242, 397, 1406, 1909, 2281, 2479, 2490, 3460 |
| BstSFI | CTRYAG | 5 cut(s) | 561, 877, 1343, 2349, 3222 |
| BstSLI | GKGCMC | 6 cut(s) | 72, 232, 655, 1486, 1919, 3570 |
| BstUI | CGCG | 3 cut(s) | 42, 87, 3525 |
| BstV2I | GAAGAC | 3 cut(s) | 665, 1248, 1623 |
| BstX2I | RGATCY | 3 cut(s) | 1393, 1878, 2449 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1931 |
| BstYI | RGATCY | 3 cut(s) | 1393, 1878, 2449 |
| Bsu15I | ATCGAT | 1 cut(s) | 3495 |
| BsuI | GTATCC | 1 cut(s) | 992 |
| BsuRI | GGCC | 8 cut(s) | 63, 230, 1473, 1648, 2281, 2431, 3485, 3568 |
| BsuTUI | ATCGAT | 1 cut(s) | 3495 |
| BtgI | CCRYGG | 2 cut(s) | 185, 3562 |
| BtsCI | GGATG | 6 cut(s) | 424, 1573, 1966, 2398, 3082, 3118 |
| BtsI | GCAGTG | 3 cut(s) | 295, 1803, 1924 |
| BveI | ACCTGC | 2 cut(s) | 1120, 2165 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1634, 1705, 1832, 2022, 2180, 2348 |
| CciI | TCATGA | 2 cut(s) | 2146, 2776 |
| CfoI | GCGC | 7 cut(s) | 87, 1602, 2490, 2572, 2697, 3247, 3527 |
| Cfr13I | GGNCC | 7 cut(s) | 49, 228, 229, 1646, 2429, 3566, 3567 |
| ClaI | ATCGAT | 1 cut(s) | 3495 |
| CseI | GACGC | 3 cut(s) | 481, 504, 589 |
| Csp6I | GTAC | 7 cut(s) | 1355, 2072, 2178, 2861, 3116, 3357, 3469 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 415, 450, 2713, 2748 |
| CviQI | GTAC | 7 cut(s) | 1355, 2072, 2178, 2861, 3116, 3357, 3469 |
| DinI | GGCGCC | 1 cut(s) | 2489 |
| DraI | TTTAAA | 1 cut(s) | 2884 |
| DriI | GACNNNNNGTC | 1 cut(s) | 256 |
| EaeI | YGGCCR | 1 cut(s) | 61 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 256 |
| EciI | GGCGGA | 4 cut(s) | 98, 121, 444, 3061 |
| Eco130I | CCWWGG | 2 cut(s) | 185, 1978 |
| Eco147I | AGGCCT | 1 cut(s) | 2281 |
| Eco24I | GRGCYC | 3 cut(s) | 232, 3523, 3570 |
| Eco47I | GGWCC | 1 cut(s) | 49 |
| Eco57I | CTGAAG | 4 cut(s) | 1788, 2643, 3080, 3130 |
| Eco72I | CACGTG | 2 cut(s) | 67, 2099 |
| Eco88I | CYCGRG | 2 cut(s) | 1123, 1513 |
| Eco91I | GGTNACC | 2 cut(s) | 690, 2819 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1280, 1955, 2676 |
| EcoO109I | RGGNCCY | 4 cut(s) | 228, 229, 2429, 3567 |
| EcoO65I | GGTNACC | 2 cut(s) | 690, 2819 |
| EcoRII | CCWGG | 7 cut(s) | 242, 1406, 1909, 2281, 2479, 2490, 3460 |
| EcoT14I | CCWWGG | 2 cut(s) | 185, 1978 |
| EcoT22I | ATGCAT | 1 cut(s) | 1575 |
| EcoT38I | GRGCYC | 3 cut(s) | 232, 3523, 3570 |
| EgeI | GGCGCC | 1 cut(s) | 2489 |
| EheI | GGCGCC | 1 cut(s) | 2489 |
| ErhI | CCWWGG | 2 cut(s) | 185, 1978 |
| Esp3I | CGTCTC | 1 cut(s) | 312 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1216, 1248, 2973, 3005 |
| FaqI | GGGAC | 7 cut(s) | 151, 203, 223, 580, 1909, 2703, 3443 |
| FauI | CCCGC | 1 cut(s) | 3386 |
| FbaI | TGATCA | 1 cut(s) | 2779 |
| FokI | GGATG | 6 cut(s) | 431, 1560, 1973, 2405, 3089, 3125 |
| FriOI | GRGCYC | 3 cut(s) | 232, 3523, 3570 |
| FspBI | CTAG | 7 cut(s) | 275, 728, 738, 935, 1479, 3156, 3183 |
| FspI | TGCGCA | 1 cut(s) | 2571 |
| GlaI | GCGC | 7 cut(s) | 86, 1601, 2489, 2571, 2696, 3246, 3526 |
| GsaI | CCCAGC | 1 cut(s) | 1464 |
| GsuI | CTGGAG | 7 cut(s) | 98, 768, 2388, 2783, 2814, 2894, 3357 |
| HaeII | RGCGCY | 1 cut(s) | 2491 |
| HaeIII | GGCC | 8 cut(s) | 63, 230, 1473, 1648, 2281, 2431, 3485, 3568 |
| HapII | CCGG | 4 cut(s) | 8, 195, 205, 399 |
| HgaI | GACGC | 3 cut(s) | 481, 504, 589 |
| HhaI | GCGC | 7 cut(s) | 87, 1602, 2490, 2572, 2697, 3247, 3527 |
| Hin1I | GRCGYC | 4 cut(s) | 12, 515, 581, 2488 |
| Hin6I | GCGC | 7 cut(s) | 85, 1600, 2488, 2570, 2695, 3245, 3525 |
| HinP1I | GCGC | 7 cut(s) | 85, 1600, 2488, 2570, 2695, 3245, 3525 |
| HincII | GTYRAC | 2 cut(s) | 744, 1966 |
| HindII | GTYRAC | 2 cut(s) | 744, 1966 |
| HindIII | AAGCTT | 1 cut(s) | 2959 |
| HpaII | CCGG | 4 cut(s) | 8, 195, 205, 399 |
| HphI | GGTGA | 8 cut(s) | 680, 684, 909, 2123, 2150, 2591, 2671, 3502 |
| Hpy166II | GTNNAC | 8 cut(s) | 744, 1484, 1837, 1917, 1924, 1966, 3214, 3471 |
| Hpy8I | GTNNAC | 8 cut(s) | 744, 1484, 1837, 1917, 1924, 1966, 3214, 3471 |
| Hpy99I | CGWCG | 4 cut(s) | 224, 377, 475, 520 |
| HpyCH4III | ACNGT | 9 cut(s) | 237, 1834, 1900, 1921, 2117, 2182, 2377, 2749, 3370 |
| HpyCH4IV | ACGT | 3 cut(s) | 12, 66, 2098 |
| HpySE526I | ACGT | 3 cut(s) | 12, 66, 2098 |
| Hsp92I | GRCGYC | 4 cut(s) | 12, 515, 581, 2488 |
| HspAI | GCGC | 7 cut(s) | 85, 1600, 2488, 2570, 2695, 3245, 3525 |
| KasI | GGCGCC | 1 cut(s) | 2487 |
| KpnI | GGTACC | 1 cut(s) | 2075 |
| Ksp22I | TGATCA | 1 cut(s) | 2779 |
| MaeI | CTAG | 7 cut(s) | 275, 728, 738, 935, 1479, 3156, 3183 |
| MaeII | ACGT | 3 cut(s) | 12, 66, 2098 |
| MaeIII | GTNAC | 9 cut(s) | 690, 1828, 1864, 1900, 2111, 2293, 2305, 2399, 2819 |
| MbiI | CCGCTC | 1 cut(s) | 3393 |
| MboII | GAAGA | 9 cut(s) | 643, 670, 848, 1253, 1361, 1628, 2621, 2674, 3307 |
| MflI | RGATCY | 3 cut(s) | 1393, 1878, 2449 |
| MhlI | GDGCHC | 9 cut(s) | 72, 159, 232, 655, 1340, 1486, 1919, 3523, 3570 |
| Mly113I | GGCGCC | 1 cut(s) | 2488 |
| MlyI | GAGTC | 8 cut(s) | 185, 314, 335, 1047, 1238, 1334, 3250, 3316 |
| MmeI | TCCRAC | 3 cut(s) | 393, 1699, 2663 |
| Mph1103I | ATGCAT | 1 cut(s) | 1575 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1368, 1728, 2586 |
| MseI | TTAA | 8 cut(s) | 210, 923, 1448, 1956, 2258, 2312, 2883, 2991 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2017, 2066, 2136, 3582 |
| MspA1I | CMGCKG | 3 cut(s) | 1418, 1460, 2761 |
| MspCI | CTTAAG | 1 cut(s) | 2311 |
| MspI | CCGG | 4 cut(s) | 8, 195, 205, 399 |
| MspR9I | CCNGG | 8 cut(s) | 244, 399, 1408, 1911, 2283, 2481, 2492, 3462 |
| Mva1269I | GAATGC | 2 cut(s) | 2383, 3433 |
| MvaI | CCWGG | 7 cut(s) | 244, 1408, 1911, 2283, 2481, 2492, 3462 |
| MvnI | CGCG | 3 cut(s) | 42, 87, 3525 |
| NarI | GGCGCC | 1 cut(s) | 2488 |
| NciI | CCSGG | 1 cut(s) | 399 |
| NcoI | CCATGG | 1 cut(s) | 185 |
| NmeAIII | GCCGAG | 2 cut(s) | 323, 3350 |
| NmuCI | GTSAC | 5 cut(s) | 690, 1864, 2111, 2293, 2305 |
| NsbI | TGCGCA | 1 cut(s) | 2571 |
| NsiI | ATGCAT | 1 cut(s) | 1575 |
| NspI | RCATGY | 4 cut(s) | 905, 2204, 2330, 3324 |
| PaeI | GCATGC | 1 cut(s) | 905 |
| PaeR7I | CTCGAG | 1 cut(s) | 1123 |
| PagI | TCATGA | 2 cut(s) | 2146, 2776 |
| PasI | CCCWGGG | 1 cut(s) | 243 |
| PceI | AGGCCT | 1 cut(s) | 2281 |
| PciI | ACATGT | 1 cut(s) | 2200 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 18, 72, 336 |
| PctI | GAATGC | 2 cut(s) | 2383, 3433 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1368, 1728, 2586 |
| PfeI | GAWTC | 6 cut(s) | 404, 590, 824, 2228, 2563, 2903 |
| PflFI | GACNNNGTC | 1 cut(s) | 323 |
| Ple19I | CGATCG | 1 cut(s) | 379 |
| PleI | GAGTC | 8 cut(s) | 185, 314, 335, 1047, 1238, 1333, 3250, 3315 |
| PluTI | GGCGCC | 1 cut(s) | 2491 |
| PmaCI | CACGTG | 2 cut(s) | 67, 2099 |
| PmlI | CACGTG | 2 cut(s) | 67, 2099 |
| PpsI | GAGTC | 8 cut(s) | 185, 314, 335, 1047, 1238, 1333, 3250, 3315 |
| Ppu21I | YACGTR | 2 cut(s) | 67, 2099 |
| PscI | ACATGT | 1 cut(s) | 2200 |
| PshAI | GACNNNNGTC | 1 cut(s) | 572 |
| PsiI | TTATAA | 1 cut(s) | 623 |
| Psp6I | CCWGG | 7 cut(s) | 242, 1406, 1909, 2281, 2479, 2490, 3460 |
| PspCI | CACGTG | 2 cut(s) | 67, 2099 |
| PspEI | GGTNACC | 2 cut(s) | 690, 2819 |
| PspFI | CCCAGC | 1 cut(s) | 1460 |
| PspGI | CCWGG | 7 cut(s) | 242, 1406, 1909, 2281, 2479, 2490, 3460 |
| PspOMI | GGGCCC | 2 cut(s) | 228, 3566 |
| PspPI | GGNCC | 7 cut(s) | 49, 228, 229, 1646, 2429, 3566, 3567 |
| PstI | CTGCAG | 3 cut(s) | 565, 2353, 3226 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1634, 1705, 1832, 2022, 2180, 2348 |
| PsuI | RGATCY | 3 cut(s) | 1393, 1878, 2449 |
| PsyI | GACNNNGTC | 1 cut(s) | 323 |
| PvuI | CGATCG | 1 cut(s) | 379 |
| PvuII | CAGCTG | 3 cut(s) | 1418, 1460, 2761 |
| RsaI | GTAC | 7 cut(s) | 1356, 2073, 2179, 2862, 3117, 3358, 3470 |
| RsaNI | GTAC | 7 cut(s) | 1355, 2072, 2178, 2861, 3116, 3357, 3469 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2017, 2066, 2136, 3582 |
| SaqAI | TTAA | 8 cut(s) | 210, 923, 1448, 1956, 2258, 2312, 2883, 2991 |
| Sau96I | GGNCC | 7 cut(s) | 49, 228, 229, 1646, 2429, 3566, 3567 |
| SbfI | CCTGCAGG | 1 cut(s) | 565 |
| SchI | GAGTC | 8 cut(s) | 185, 314, 335, 1047, 1238, 1334, 3250, 3316 |
| ScrFI | CCNGG | 8 cut(s) | 244, 399, 1408, 1911, 2283, 2481, 2492, 3462 |
| SdaI | CCTGCAGG | 1 cut(s) | 565 |
| SduI | GDGCHC | 9 cut(s) | 72, 159, 232, 655, 1340, 1486, 1919, 3523, 3570 |
| SfcI | CTRYAG | 5 cut(s) | 561, 877, 1343, 2349, 3222 |
| SfoI | GGCGCC | 1 cut(s) | 2489 |
| Sfr274I | CTCGAG | 1 cut(s) | 1123 |
| SinI | GGWCC | 1 cut(s) | 49 |
| SlaI | CTCGAG | 1 cut(s) | 1123 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2017, 2066, 2136, 3582 |
| SmlI | CTYRAG | 4 cut(s) | 594, 1123, 2311, 2708 |
| SmoI | CTYRAG | 4 cut(s) | 594, 1123, 2311, 2708 |
| SphI | GCATGC | 1 cut(s) | 905 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 565 |
| SseBI | AGGCCT | 1 cut(s) | 2281 |
| SspDI | GGCGCC | 1 cut(s) | 2487 |
| SspI | AATATT | 1 cut(s) | 2443 |
| SspMI | CTAG | 7 cut(s) | 275, 728, 738, 935, 1479, 3156, 3183 |
| StuI | AGGCCT | 1 cut(s) | 2281 |
| StyD4I | CCNGG | 8 cut(s) | 242, 397, 1406, 1909, 2281, 2479, 2490, 3460 |
| StyI | CCWWGG | 2 cut(s) | 185, 1978 |
| TaaI | ACNGT | 9 cut(s) | 237, 1834, 1900, 1921, 2117, 2182, 2377, 2749, 3370 |
| TaiI | ACGT | 3 cut(s) | 15, 69, 2101 |
| TaqII | GACCGA | 1 cut(s) | 313 |
| TatI | WGTACW | 3 cut(s) | 1354, 3115, 3468 |
| TauI | GCSGC | 4 cut(s) | 515, 1764, 2326, 3485 |
| TfiI | GAWTC | 6 cut(s) | 404, 590, 824, 2228, 2563, 2903 |
| Tru1I | TTAA | 8 cut(s) | 210, 923, 1448, 1956, 2258, 2312, 2883, 2991 |
| Tru9I | TTAA | 8 cut(s) | 210, 923, 1448, 1956, 2258, 2312, 2883, 2991 |
| TseFI | GTSAC | 5 cut(s) | 690, 1864, 2111, 2293, 2305 |
| Tsp45I | GTSAC | 5 cut(s) | 690, 1864, 2111, 2293, 2305 |
| TspDTI | ATGAA | 8 cut(s) | 205, 855, 1537, 1842, 2135, 2148, 2591, 3264 |
| TspGWI | ACGGA | 4 cut(s) | 652, 1101, 1373, 2262 |
| Tth111I | GACNNNGTC | 1 cut(s) | 323 |
| Vha464I | CTTAAG | 1 cut(s) | 2311 |
| VneI | GTGCAC | 2 cut(s) | 1482, 1915 |
| VpaK11BI | GGWCC | 1 cut(s) | 49 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1280, 1955, 2676 |
| XapI | RAATTY | 6 cut(s) | 1365, 1492, 1810, 2142, 2953, 3178 |
| XbaI | TCTAGA | 1 cut(s) | 3155 |
| XceI | RCATGY | 4 cut(s) | 905, 2204, 2330, 3324 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 40, 240 |
| XhoI | CTCGAG | 1 cut(s) | 1123 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1368, 1728, 2586 |
| XspI | CTAG | 7 cut(s) | 275, 728, 738, 935, 1479, 3156, 3183 |
| ZraI | GACGTC | 1 cut(s) | 13 |
| Zsp2I | ATGCAT | 1 cut(s) | 1575 |