Rroxscaffold_7G00170790

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006329
Physical Location & Seq
Reverse (-)
11144908 .. 11150705
5798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170790.1

Sequence Viewer

Length: 3576 bp
ATGGAGCCGGACGTGAGCATCGAAACCAGCTCCATGATCCGCGTGGCGGTCCTCCCCATCGGCCACGTGCCGCCGGTCCTCCTGCGCGACTACCACTCCATGCTGCTCCGCCACCAGTCGATCCCTCTCTCCGCCGTCAGCTCCTTCTACACCGAGCACCAGAAGTCGCCCTTCGCTCACCAGCCCTGGGACTCCGGCAGCCTCCGCTTCAAGTTCGTCCTCGGCGGCGCCCCTCCCAGCCCCTGGGAGGACTTCCAGTCCAACCGCAAAACCCTTGCCGTCATTGGAATCTGCCACTGCCCTTCCTCCCCGGATCTCGGCTCCGTCATGGATCAATTCGATTCCGTCTGTAGAGCCTACCCTGCCGCACTCGTCGAACGCTGCTTTGCCTTCTGCCCCGCCGATTCTCAGTTGGAGGATGGGAGTAAGAAAGGGTGGAACCTGATGCTGTTCCCACCGGCGGATCGGGCCACACAGGAGTTTCACTTGCAAACGATGATGCAAGACATAGCGGCCTCATTGCTAATGGAGTTTGAGAAATGGGTGCTTAAGGCTGAGCCTGCGGGGACTATTGTCAAGACGCCTTTGGATTCTCAAGCTACTCTCAACTCAGAGGAGGTTATAAAGGCTAAGAAACGGAGGCTTGGGCGTGCACAGAAGACTATGGGTGATTATTGCTTGTTGGCAGGATCACCGGTTGATGCCAATCTTCATTACTCTACTGCATTGGAACTTGCTAGACTTTCATGGCTTGCTATTGATCGAATGGGCCAAAAGGATACAGCCGTGGAAGAGGAAGTTAGATATCGGTATAATAGTGTCATTTTGCACTACAGGAAGTCGTTCATACAAGAGAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTGGCAAGGTTTCTTTGCAGACGTGAGCTGGCTAAGGAGGTAGTGGAGCTATTAACAAATGCAGCAGATGGTGCGAAATCTCTGATTGATGCCAGTGATAGACTTGTACTTTATGTTGAAATAGCTCGTTTATATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTTTGGCAATGACCACAAAAGCATATCGTGTTCAAAGCTTCTGCACATGCATGTATTGTGTTTTCAGACCAATTGCTGGTTTAGTATATGCATCTGAGAAGGAAACTGGATCAAGTGTTGTTGAGGGTGGGAAAATGCCCCATCAGTCGGTAGTCTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCGTGGGGTGCAGCTGCAAGACTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAATTGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCATCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTGTATTCTTTTCCTCTCCATCCTTCACAAATGGACATTGTAAAGCGCAATCCTGCAAGAGAAGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTATACGCCATTCAGCAAGGGAGAGCCAAGCAATAACAGCAAACAGGAGCTGATTTGGATTGTTGGAGAACCAGTTCAGATTTTGGTGGAACTGGCAAACCCATGCGGCTTTGATTTGAGGGTCGATAGTATATATCTCTCTGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCACTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATCCCAACTTCAGTGGGGCCAGTGACAATTCCTGGTTGCACCGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTGTCGGACCCTTTCAGATGCTGTGGGTCTGCAAGGTTGAAAAATATATCTGTTCCAAGTATTTCTGTAGTACCGCCACTGCCATTACTCGTTTCACGTGTTGTTGGTGGTGATGGTGCAATCATTCTACACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACAGTTCCAGTTGAGCAAGTCCATGTATCGCTATCTGGAAAACACCAAGATTCTGTTCTCTTTATTGCATCTGAAACCTTAAAATCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATTCCTGTGACTTTAAAAGCTTGGCGAATTGTCTTAGCGGATGCAGATACTGCTGCTGGCAGGAGTGCCTCTAAGCACTGTAAGGATGGAAACAGCCCCACATTGTTGATCCATTATGCAGGGACTCTGCCAAATACTGGAGATCCTTCAACAGAAAAGTCTGTTGTCCCACCCGGCAGACGCCTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCGATGGAGATTCCTGCACAAGTAGGTGAAAACCTTCCGAAGCCAGTTCATATTGACAATAGTCTTACTGAAGGAGCTGTGGGCACTCCAAATAAGATGGACAGATTGGTGAAAATTGATCCTTTTAGAGGAAGCTGGGGACTACGCTTCCTTGAACTTGAGTTGTCTAATCCAACTGATGTTGTCTTTGAAATTAGTGTTTCTGTCCAACTGGAGAACACTGATCATGAGCATAGCCTCTCCGTTGATCGAGATGCTACTGAGTATGGTTACCCTAAAACAAGAATTGATCGAGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAATTGCCTGTTCTTGATGATTCTTTTTTTGTAAAAGATAATCAAGCTGATGGGAGTGGCAGAAGTTATAGCTTTTCAGAAAGGAATACGAAAGCTGAACTTAATGCCTCTATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGCTCTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCGTTAACATTTTGCTTCAGGCTTTCCAGAAATGGCCCTGGACCTGAAAATATTGATTCCCATGAAGAATCCAATGATCAAGTTGACTCTTCTGCTTCTAAAGGATCTGTGATGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAATTAATCAAGATGAGTCTTAACGTTGTGTGCAGAGATGTTGCGGGAGAGGATTGTGTAGAGTGTGCAAATGCAACTGTCTTATGTTCTGGTGTTTTGGGTGGGATAACCATGGAGGTTCCACCGCTTGAAGAAATCAAGCATTCTTTCTCTTTGTATTTTCTCGTCCCCGGGGAGTACACACTAATAGCGGCTGCCATGATCGAAGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACCAAATCCTCTGATGAGCCGATTTTCTGTCGTGGCCCTCCATATCATGTCCGGGTTGTTGGCACTGCATAA

Protein Analysis

1191

Amino Acids

130.52

Weight (kDa)

6.16

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC9-Trs120 PF08626 9 - 184 2.7e-17 Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120 PF26251 315 - 493 4.6e-12 Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st PF26254 541 - 640 4.1e-20 Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd PF26282 878 - 1031 3.2e-12 Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th PF26283 1060 - 1187 4.3e-13 Trs120/TRAPPC9, fourth Ig-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AarI CACCTGC 1 cut(s) 1450
Acc36I ACCTGC 2 cut(s) 1075, 1450
AccB1I GGYRCC 1 cut(s) 227
AccB7I CCANNNNNTGG 3 cut(s) 243, 1220, 2420
AccII CGCG 2 cut(s) 42, 87
AclI AACGTT 1 cut(s) 3288
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 2 cut(s) 1795, 2127
AcuI CTGAAG 5 cut(s) 1773, 1857, 2619, 3053, 3103
AcvI CACGTG 2 cut(s) 67, 2084
AcyI GRCGYC 3 cut(s) 228, 581, 2464
AfaI GTAC 8 cut(s) 1014, 1341, 2058, 2164, 2841, 3057, 3090, 3443
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 1 cut(s) 2083
AgeI ACCGGT 1 cut(s) 694
AhdI GACNNNNNGTC 1 cut(s) 256
AjiI CACGTC 2 cut(s) 13, 929
AjnI CCWGG 6 cut(s) 185, 242, 1894, 2266, 2466, 3139
AjuI GAANNNNNNNTTGG 2 cut(s) 2202, 2234
AleI CACNNNNGTG 1 cut(s) 2121
AloI GAACNNNNNNTCC 2 cut(s) 1698, 1730
Alw21I GWGCWC 4 cut(s) 159, 655, 1325, 1471
Alw26I GTCTC 2 cut(s) 1303, 1317
Alw44I GTGCAC 2 cut(s) 651, 1467
AlwNI CAGNNNCTG 5 cut(s) 243, 1690, 1817, 2007, 2333
Ama87I CYCGRG 1 cut(s) 3434
ApaLI GTGCAC 2 cut(s) 651, 1467
ApoI RAATTY 2 cut(s) 1795, 2127
AseI ATTAAT 1 cut(s) 3269
AsiGI ACCGGT 1 cut(s) 694
Asp700I GAANNNNTTC 3 cut(s) 842, 1713, 2562
AspLEI GCGC 4 cut(s) 87, 230, 1587, 3220
AsuC2I CCSGG 5 cut(s) 311, 2457, 3435, 3436, 3557
AsuHPI GGTGA 8 cut(s) 170, 680, 684, 864, 2108, 2135, 2567, 2650
AvaI CYCGRG 1 cut(s) 3434
AvaII GGWCC 4 cut(s) 49, 76, 1993, 3143
AxyI CCTNAGG 1 cut(s) 3488
BaeGI GKGCMC 3 cut(s) 655, 1471, 2615
BaeI ACNNNNGTAYC 2 cut(s) 771, 804
BamHI GGATCC 1 cut(s) 1863
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 3496
BauI CACGAG 1 cut(s) 3495
BbrPI CACGTG 2 cut(s) 67, 2084
BbsI GAAGAC 2 cut(s) 665, 1608
Bbv12I GWGCWC 4 cut(s) 159, 655, 1325, 1471
BceAI ACGGC 3 cut(s) 119, 263, 770
BciT130I CCWGG 6 cut(s) 187, 244, 1896, 2268, 2468, 3141
BciVI GTATCC 1 cut(s) 772
BclI TGATCA 2 cut(s) 2752, 3178
BcnI CCSGG 5 cut(s) 311, 2457, 3435, 3436, 3557
BcoDI GTCTC 2 cut(s) 1303, 1317
BfaI CTAG 3 cut(s) 738, 1464, 2991
BfmI CTRYAG 3 cut(s) 349, 832, 2052
BfoI RGCGCY 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 548
BfuAI ACCTGC 2 cut(s) 1075, 1450
BfuI GTATCC 1 cut(s) 772
BlpI GCTNAGC 1 cut(s) 555
Bme18I GGWCC 4 cut(s) 49, 76, 1993, 3143
BmeRI GACNNNNNGTC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 3434
BmgBI CACGTC 2 cut(s) 13, 929
BmiI GGNNCC 8 cut(s) 6, 229, 322, 440, 1865, 1881, 1995, 3384
BmrI ACTGGG 1 cut(s) 1638
BmuI ACTGGG 1 cut(s) 1638
BoxI GACNNNNGTC 2 cut(s) 572, 2589
BpiI GAAGAC 2 cut(s) 665, 1608
BpmI CTGGAG 6 cut(s) 1635, 2289, 2442, 2762, 2873, 3051
Bpu10I CCTNAGC 1 cut(s) 939
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 5 cut(s) 579, 911, 1063, 2281, 2708
BpuMI CCSGG 5 cut(s) 311, 2457, 3435, 3436, 3557
BsaAI YACGTR 2 cut(s) 67, 2084
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 3 cut(s) 228, 581, 2464
BsaWI WCCGGW 1 cut(s) 694
BsaXI ACNNNNNCTCC 6 cut(s) 80, 110, 1698, 1728, 2262, 2292
Bse118I RCCGGY 3 cut(s) 73, 457, 694
Bse21I CCTNAGG 1 cut(s) 3488
Bse3DI GCAATG 3 cut(s) 518, 1143, 1158
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 6 cut(s) 187, 244, 1896, 2268, 2468, 3141
BseGI GGATG 7 cut(s) 424, 1558, 1951, 2329, 2374, 3055, 3091
BseJI GATNNNNATC 1 cut(s) 705
BseMI GCAATG 3 cut(s) 518, 1143, 1158
BseMII CTCAG 9 cut(s) 422, 546, 624, 875, 1106, 1230, 1328, 2781, 3502
BseRI GAGGAG 1 cut(s) 629
BseSI GKGCMC 3 cut(s) 655, 1471, 2615
BseYI CCCAGC 3 cut(s) 236, 1445, 2664
BsgI GTGCAG 4 cut(s) 1171, 1419, 2529, 3316
Bsh1236I CGCG 2 cut(s) 42, 87
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 694
BsiHKAI GWGCWC 4 cut(s) 159, 655, 1325, 1471
BsiHKCI CYCGRG 1 cut(s) 3434
BsiSI CCGG 9 cut(s) 8, 74, 195, 311, 458, 695, 2457, 3435, 3556
BslFI GGGAC 6 cut(s) 203, 580, 2419, 2435, 2682, 3416
BsmAI GTCTC 2 cut(s) 1303, 1317
BsmFI GGGAC 6 cut(s) 203, 580, 2419, 2435, 2682, 3416
BsmI GAATGC 2 cut(s) 862, 3406
BsoBI CYCGRG 1 cut(s) 3434
Bsp1286I GDGCHC 6 cut(s) 159, 655, 1325, 1471, 2615, 3496
Bsp1407I TGTACA 1 cut(s) 3055
Bsp1720I GCTNAGC 1 cut(s) 555
Bsp19I CCATGG 1 cut(s) 3375
BspCNI CTCAG 9 cut(s) 421, 547, 623, 874, 1105, 1231, 1327, 2782, 3501
BspFNI CGCG 2 cut(s) 42, 87
BspHI TCATGA 1 cut(s) 2755
BspLI GGNNCC 8 cut(s) 6, 229, 322, 440, 1865, 1881, 1995, 3384
BspMI ACCTGC 2 cut(s) 1075, 1450
BspT107I GGYRCC 1 cut(s) 227
BspTI CTTAAG 1 cut(s) 548
BsrDI GCAATG 3 cut(s) 518, 1143, 1158
BsrFI RCCGGY 3 cut(s) 73, 457, 694
BsrGI TGTACA 1 cut(s) 3055
BssAI RCCGGY 3 cut(s) 73, 457, 694
BssNI GRCGYC 3 cut(s) 228, 581, 2464
BssSI CACGAG 1 cut(s) 3495
BssT1I CCWWGG 2 cut(s) 1963, 3375
Bst2BI CACGAG 1 cut(s) 3495
Bst2UI CCWGG 6 cut(s) 187, 244, 1896, 2268, 2468, 3141
Bst4CI ACNGT 5 cut(s) 1819, 1906, 2167, 2363, 3343
Bst6I CTCTTC 2 cut(s) 786, 3196
BstACI GRCGYC 3 cut(s) 228, 581, 2464
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 2 cut(s) 977, 2333
BstAUI TGTACA 1 cut(s) 3055
BstBAI YACGTR 2 cut(s) 67, 2084
BstC8I GCNNGC 5 cut(s) 561, 651, 753, 936, 2341
BstDSI CCRYGG 2 cut(s) 786, 3375
BstEII GGTNACC 1 cut(s) 2798
BstENI CCTNNNNNAGG 2 cut(s) 1940, 2655
BstF5I GGATG 7 cut(s) 424, 1558, 1951, 2329, 2374, 3055, 3091
BstFNI CGCG 2 cut(s) 42, 87
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 4 cut(s) 87, 230, 1587, 3220
BstMAI GTCTC 2 cut(s) 1303, 1317
BstNI CCWGG 6 cut(s) 187, 244, 1896, 2268, 2468, 3141
BstNSI RCATGY 2 cut(s) 1194, 1198
BstPAI GACNNNNGTC 2 cut(s) 572, 2589
BstPI GGTNACC 1 cut(s) 2798
BstSFI CTRYAG 3 cut(s) 349, 832, 2052
BstSLI GKGCMC 3 cut(s) 655, 1471, 2615
BstUI CGCG 2 cut(s) 42, 87
BstV2I GAAGAC 2 cut(s) 665, 1608
BstX2I RGATCY 5 cut(s) 313, 1378, 1863, 2425, 3206
BstXI CCANNNNNNTGG 1 cut(s) 1916
BstYI RGATCY 5 cut(s) 313, 1378, 1863, 2425, 3206
Bsu36I CCTNAGG 1 cut(s) 3488
BsuI GTATCC 1 cut(s) 772
BtgI CCRYGG 2 cut(s) 786, 3375
BtrI CACGTC 2 cut(s) 13, 929
BtsCI GGATG 7 cut(s) 424, 1558, 1951, 2329, 2374, 3055, 3091
BtsI GCAGTG 4 cut(s) 295, 1909, 2063, 3567
BveI ACCTGC 2 cut(s) 1075, 1450
Cac8I GCNNGC 5 cut(s) 561, 651, 753, 936, 2341
CaiI CAGNNNCTG 5 cut(s) 243, 1690, 1817, 2007, 2333
CciI TCATGA 1 cut(s) 2755
CfoI GCGC 4 cut(s) 87, 230, 1587, 3220
Cfr10I RCCGGY 3 cut(s) 73, 457, 694
Cfr9I CCCGGG 1 cut(s) 3434
CseI GACGC 2 cut(s) 589, 2472
Csp6I GTAC 8 cut(s) 1013, 1340, 2057, 2163, 2840, 3056, 3089, 3442
CspAI ACCGGT 1 cut(s) 694
CspCI CAANNNNNGTGG 2 cut(s) 1857, 1892
CviQI GTAC 8 cut(s) 1013, 1340, 2057, 2163, 2840, 3056, 3089, 3442
DinI GGCGCC 1 cut(s) 229
DraI TTTAAA 2 cut(s) 2298, 2863
DriI GACNNNNNGTC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 786, 3196
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 2 cut(s) 786, 3196
EciI GGCGGA 3 cut(s) 98, 121, 476
Eco130I CCWWGG 2 cut(s) 1963, 3375
Eco147I AGGCCT 1 cut(s) 2266
Eco24I GRGCYC 1 cut(s) 3496
Eco32I GATATC 2 cut(s) 806, 3484
Eco47I GGWCC 4 cut(s) 49, 76, 1993, 3143
Eco57I CTGAAG 5 cut(s) 1773, 1857, 2619, 3053, 3103
Eco72I CACGTG 2 cut(s) 67, 2084
Eco81I CCTNAGG 1 cut(s) 3488
Eco88I CYCGRG 1 cut(s) 3434
Eco91I GGTNACC 1 cut(s) 2798
EcoNI CCTNNNNNAGG 2 cut(s) 1940, 2655
EcoO65I GGTNACC 1 cut(s) 2798
EcoRII CCWGG 6 cut(s) 185, 242, 1894, 2266, 2466, 3139
EcoRV GATATC 2 cut(s) 806, 3484
EcoT14I CCWWGG 2 cut(s) 1963, 3375
EcoT22I ATGCAT 2 cut(s) 1196, 1237
EcoT38I GRGCYC 1 cut(s) 3496
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 1963, 3375
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 2946, 2978
FaqI GGGAC 6 cut(s) 203, 580, 2419, 2435, 2682, 3416
FauI CCCGC 3 cut(s) 406, 556, 3301
FbaI TGATCA 2 cut(s) 2752, 3178
FokI GGATG 7 cut(s) 431, 1545, 1958, 2336, 2381, 3062, 3098
FriOI GRGCYC 1 cut(s) 3496
FspBI CTAG 3 cut(s) 738, 1464, 2991
GlaI GCGC 4 cut(s) 86, 229, 1586, 3219
GsaI CCCAGC 3 cut(s) 240, 1449, 2668
GsuI CTGGAG 6 cut(s) 1635, 2289, 2442, 2762, 2873, 3051
HaeII RGCGCY 1 cut(s) 231
HapII CCGG 9 cut(s) 8, 74, 195, 311, 458, 695, 2457, 3435, 3556
HgaI GACGC 2 cut(s) 589, 2472
HhaI GCGC 4 cut(s) 87, 230, 1587, 3220
Hin1I GRCGYC 3 cut(s) 228, 581, 2464
Hin6I GCGC 4 cut(s) 85, 228, 1585, 3218
HinP1I GCGC 4 cut(s) 85, 228, 1585, 3218
HincII GTYRAC 3 cut(s) 1951, 3108, 3187
HindII GTYRAC 3 cut(s) 1951, 3108, 3187
HindIII AAGCTT 2 cut(s) 1180, 2301
HpaI GTTAAC 1 cut(s) 3108
HpaII CCGG 9 cut(s) 8, 74, 195, 311, 458, 695, 2457, 3435, 3556
HphI GGTGA 8 cut(s) 170, 680, 684, 864, 2108, 2135, 2567, 2650
Hpy166II GTNNAC 7 cut(s) 653, 1469, 1909, 1951, 3108, 3187, 3444
Hpy8I GTNNAC 7 cut(s) 653, 1469, 1909, 1951, 3108, 3187, 3444
Hpy99I CGWCG 1 cut(s) 377
HpyCH4III ACNGT 5 cut(s) 1819, 1906, 2167, 2363, 3343
HpyCH4IV ACGT 5 cut(s) 12, 66, 928, 2083, 3288
HpySE526I ACGT 5 cut(s) 12, 66, 928, 2083, 3288
Hsp92I GRCGYC 3 cut(s) 228, 581, 2464
HspAI GCGC 4 cut(s) 85, 228, 1585, 3218
KasI GGCGCC 1 cut(s) 227
Ksp22I TGATCA 2 cut(s) 2752, 3178
KspAI GTTAAC 1 cut(s) 3108
MaeI CTAG 3 cut(s) 738, 1464, 2991
MaeII ACGT 5 cut(s) 12, 66, 928, 2083, 3288
MaeIII GTNAC 7 cut(s) 1813, 1849, 1885, 2278, 2290, 2798, 3251
MboII GAAGA 9 cut(s) 670, 701, 803, 1613, 1817, 3179, 3183, 3407, 3482
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 5 cut(s) 313, 1378, 1863, 2425, 3206
MhlI GDGCHC 6 cut(s) 159, 655, 1325, 1471, 2615, 3496
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 6 cut(s) 185, 1319, 2401, 3182, 3223, 3289
MmeI TCCRAC 6 cut(s) 285, 393, 1684, 1971, 2726, 2761
Mph1103I ATGCAT 2 cut(s) 1196, 1237
MroXI GAANNNNTTC 3 cut(s) 842, 1713, 2562
MslI CAYNNNNRTG 2 cut(s) 1193, 2121
MspA1I CMGCKG 2 cut(s) 1403, 1484
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 9 cut(s) 8, 74, 195, 311, 458, 695, 2457, 3435, 3556
MunI CAATTG 1 cut(s) 1215
Mva1269I GAATGC 2 cut(s) 862, 3406
MvaI CCWGG 6 cut(s) 187, 244, 1896, 2268, 2468, 3141
MvnI CGCG 2 cut(s) 42, 87
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 5 cut(s) 311, 2457, 3435, 3436, 3557
NcoI CCATGG 1 cut(s) 3375
NlaIV GGNNCC 8 cut(s) 6, 229, 322, 440, 1865, 1881, 1995, 3384
NmeAIII GCCGAG 2 cut(s) 201, 297
NmuCI GTSAC 5 cut(s) 1813, 1849, 1885, 2278, 2290
NsiI ATGCAT 2 cut(s) 1196, 1237
NspI RCATGY 2 cut(s) 1194, 1198
OliI CACNNNNGTG 1 cut(s) 2121
PagI TCATGA 1 cut(s) 2755
PaqCI CACCTGC 1 cut(s) 1450
PasI CCCWGGG 2 cut(s) 186, 243
PceI AGGCCT 1 cut(s) 2266
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 2 cut(s) 862, 3406
PdmI GAANNNNTTC 3 cut(s) 842, 1713, 2562
PfeI GAWTC 9 cut(s) 288, 341, 404, 590, 2213, 2539, 2882, 3158, 3170
PflMI CCANNNNNTGG 3 cut(s) 243, 1220, 2420
PinAI ACCGGT 1 cut(s) 694
PleI GAGTC 6 cut(s) 185, 1318, 2401, 3182, 3223, 3288
PluTI GGCGCC 1 cut(s) 231
PmaCI CACGTG 2 cut(s) 67, 2084
PmlI CACGTG 2 cut(s) 67, 2084
PpsI GAGTC 6 cut(s) 185, 1318, 2401, 3182, 3223, 3288
Ppu21I YACGTR 2 cut(s) 67, 2084
PshAI GACNNNNGTC 2 cut(s) 572, 2589
PshBI ATTAAT 1 cut(s) 3269
PsiI TTATAA 1 cut(s) 623
Psp1406I AACGTT 1 cut(s) 3288
Psp6I CCWGG 6 cut(s) 185, 242, 1894, 2266, 2466, 3139
PspCI CACGTG 2 cut(s) 67, 2084
PspEI GGTNACC 1 cut(s) 2798
PspFI CCCAGC 3 cut(s) 236, 1445, 2664
PspGI CCWGG 6 cut(s) 185, 242, 1894, 2266, 2466, 3139
PspN4I GGNNCC 8 cut(s) 6, 229, 322, 440, 1865, 1881, 1995, 3384
PstNI CAGNNNCTG 5 cut(s) 243, 1690, 1817, 2007, 2333
PsuI RGATCY 5 cut(s) 313, 1378, 1863, 2425, 3206
PvuII CAGCTG 1 cut(s) 1403
RsaI GTAC 8 cut(s) 1014, 1341, 2058, 2164, 2841, 3057, 3090, 3443
RsaNI GTAC 8 cut(s) 1013, 1340, 2057, 2163, 2840, 3056, 3089, 3442
RseI CAYNNNNRTG 2 cut(s) 1193, 2121
SchI GAGTC 6 cut(s) 185, 1319, 2401, 3182, 3223, 3289
SduI GDGCHC 6 cut(s) 159, 655, 1325, 1471, 2615, 3496
SfcI CTRYAG 3 cut(s) 349, 832, 2052
SfoI GGCGCC 1 cut(s) 229
SgrAI CRCCGGYG 1 cut(s) 457
SinI GGWCC 4 cut(s) 49, 76, 1993, 3143
SmaI CCCGGG 1 cut(s) 3436
SmiMI CAYNNNNRTG 2 cut(s) 1193, 2121
SmlI CTYRAG 6 cut(s) 548, 594, 890, 1078, 2260, 2687
SmoI CTYRAG 6 cut(s) 548, 594, 890, 1078, 2260, 2687
SseBI AGGCCT 1 cut(s) 2266
SspDI GGCGCC 1 cut(s) 227
SspI AATATT 1 cut(s) 3154
SspMI CTAG 3 cut(s) 738, 1464, 2991
StuI AGGCCT 1 cut(s) 2266
StyI CCWWGG 2 cut(s) 1963, 3375
TaaI ACNGT 5 cut(s) 1819, 1906, 2167, 2363, 3343
TaiI ACGT 5 cut(s) 15, 69, 931, 2086, 3291
TatI WGTACW 5 cut(s) 1012, 1339, 3055, 3088, 3441
TauI GCSGC 6 cut(s) 73, 228, 368, 515, 1749, 3458
TfiI GAWTC 9 cut(s) 288, 341, 404, 590, 2213, 2539, 2882, 3158, 3170
TseFI GTSAC 5 cut(s) 1813, 1849, 1885, 2278, 2290
Tsp45I GTSAC 5 cut(s) 1813, 1849, 1885, 2278, 2290
TspDTI ATGAA 8 cut(s) 701, 735, 835, 1522, 1827, 2567, 3180, 3237
TspGWI ACGGA 4 cut(s) 313, 334, 652, 2761
TspMI CCCGGG 1 cut(s) 3434
Van91I CCANNNNNTGG 3 cut(s) 243, 1220, 2420
Vha464I CTTAAG 1 cut(s) 548
VneI GTGCAC 2 cut(s) 651, 1467
VpaK11BI GGWCC 4 cut(s) 49, 76, 1993, 3143
VspI ATTAAT 1 cut(s) 3269
XagI CCTNNNNNAGG 2 cut(s) 1940, 2655
XapI RAATTY 2 cut(s) 1795, 2127
XbaI TCTAGA 1 cut(s) 2990
XceI RCATGY 2 cut(s) 1194, 1198
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmaI CCCGGG 1 cut(s) 3434
XmnI GAANNNNTTC 3 cut(s) 842, 1713, 2562
XspI CTAG 3 cut(s) 738, 1464, 2991
Zsp2I ATGCAT 2 cut(s) 1196, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.