Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

3495195 .. 3500945

Gene Structure 5751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3561 bp

ATGGAACCTGACGTCAGTATCGAGACTTTGTCGATCATTCGGATCGCCGTCCTTCCGATCGGCACTATTCCGCCGACGCTTCTCCGGGACTACCACTCGATGCTGCTCCGTCATCACACGATCGCGCTCTCAGCTATTAGCTCTTTCTACACTGAACATCAGAAATCTCCATTCACGAATCAGCCGTGGGATTCCGGCTCTCTCCGGTTCAAATTTGTGCTTGGTGGTTCTCCTCCGAGTCCTTGGGAGGATTTTCAGTCTAATCGGAAGATGCTCGCCGTGATCGGCCTTTGCCACTGTCCCTCGTCCCCTGATCTTGATTCTGTCACTGAAAAATTCAATGTCGCTTGTAAGAGTTATTCCTCGGCTCTTGTCCGGCGCTGCTTCGCTTTCTCCCCTGGCGATTCGCAACTTGAAGATGGAGACAAGAAGGGTGAAAATTTGATTTTGTTTCCTCCATCTGACAAGCAAACTCAGGAGTTTCATTTACAAACAATGATGCAAGACATTGCCGCTTCGCTGTTAATGGAATTTGAGAAGTGGGTTCTTCAGGCAGAATCTGCTGGCACAATTTTGAAGACGCCTTTGGATTCCCAAGCTAGTCTCAACTCAGAGGAGGTTATTAAGGCCAAAAAGCGTAGGCTGGGACGTGCACAAAAAACTATAGGAGACTATTCCTTGTTGGCTGGTTCACCTGTTGATGCCAATGCTCATTATTCTACTGCTCTGGAACTGGCCAGATTGACTGGAGATTACTTCTGGTATGCCGGTGCCTTGGAAGGCAGTGTTTGTGCCTTACTGGTAGATCGGATGGGTCAACGTGATGTGGCTTTAGAAGATGAAGTTAGATATCGATACACTAATGTTATCTTGCACTACAGAAAGTCATTTATTCAAGAAATTGCTCAGAGAGTTTCGCCCCTAAGCTTTGAACTCGAAGCTACCCTTAAGCTGGCCAGATTCCTTTGCAGGAGGGAACTGGCTAAGGAAGTAGTAGAGCTATTAACAAATGCAGCTGATGGTGCAAAGTCTTTAATTGATGCCAGTGATAGGCTCATATTATATGTTGAAGTAGCGCGTTTATTTGGAGCCCTTGGTTATCAACGGAAAGCAGCCTTCTTCTGTAGGCAGGTCGCCCAATTGTATTTGCAGCAAGACAATCGATTGGCTGCTATCAGTGCCATGCAAGTTCTCTCTATGACAACTGATGCATACAGAATTCAAAGTAGGGCATCCATGTCAAAAGTGTCGGTTAACAATGAAACTGGGCGCCTACCTGACGCTGGGAAAATGCATCATCATTCCATTGTCTCCCTGTTCGAGTCCCATTGGAGCACTTTGCAGATGGTTGTGCTTAGGGAGATACTCCTCTCTGCTGTTCGTGCTGGAGATCCCTTAGCTGCATGGAGTGCTGCAGCTAGGCTTCTGAGGTGGCATTATCCTCTAATTACACCTTCAGGTCAAAATGGACTTGCTAATTCCCTTGCAAATTCAGCGGATAGATTACCTTCTGGAACTCGCTGTGCTGACCCTGCCTTGCCTTTTGTAAGGCTATTCTCTTTCCCACTCCATTCCTCCCAAGTGGACATCGTAAAACGCAATCCAGCAAGAGAAGATTGGTGGACAGGCTCTGCTCCTTCTGGGCCATTTATTTACACTCCTTTCAGCAAAGGAGATGCCAACGAAAGTAGCAAGCAGGAATTGATTTGGGTGGTCGGTGAACCAGTTCAGGTCTTAGTGGAGTTAGCAAATCCTTGTTGCTTCGATTTGCGGATTGATAGTATTTATCTCTCAGCTCACTCGAGTAACTTTGATGCGTTTCCTGTCAGTGTGGACATTCCCCCTAACTCTGCAAAAGTGATCACATTATCTGGTATTCCAACAGCTGTAGGACCAGTGACAATTCCAGGCTGCACAGTTCACTGCTTTGGTGTAATCACTGAACATGTGTTCAGGGATGTTGACAATCTGCTTCTTGGAGCAGCACAAGGACTTGTATTTTCTGACCCTTTCAGATCCTGCGGATCTGCAAAGCTACGACATGTATTTGTTCCTAACATATCAGTTGCTCCTCCATTGCCCCTCCTTGTGGCTAATGTTGTGGGTGGTGATGGTGCAATTATTCTGTATGAAGGTGAAATTCGGGAGGTGTGTATAAATTTTGCAAATGCTGGCACAGTTCCAATAGTACAGGCACATGTCTCGCTCTCTGGAAAGAATCAGGATGCTGTTATCTCGATCGCAGATGAAGCTTTACAGTCTGCTCTTCCCTTGAAACCTGGGGCACAAGTGACTCTGCCTGTGACTTTAAAAGCTTGGCATGTGGGTCCAACTGATTCTGACAATACTATGAGCAGTGGCAGGAATGCTGCGGGTAACACAGGAAGACCAAAAGACGGAACCAGTCCATCATTGCTTATTCACTACGCAGGGCCATTGTCTAACAATGGGGATTCCCAAGAAAAAGAATCTATCGTGCCACCGGGCAGACGGCTTGTTGTTCCCTTACAAATTTGTGTTTTGCAAGGTTTGTCGTTTGTGAAAGCTCGTTTGCTTTCCATGGAAATCCCTGCACATGTGAGTGACAACCTTCGGGATGAAGACATTGAAAGAGAGAGCAATGCAGACAGCCTTGTCAAGATCAATCCCTTTAGGGGAAGCTGGGGACTACGGTTTCTTGAACTTGAGTTATCTAACCCAACAGATGTTGTTTTTGAAATCAGCGTCTTCGTTCAGCTGGAAAACTCTGCCAAGGAAGATGATTCTTCACCAGTACAAGATTCTCCAGAGTATGAATACCCGAAAACAAGAATCGACCGGGACTATTCTGCTAGGGTACTGATTCCATTGGAGCATTTTAAGCTACCGGTTCTTGATGGTTCATTCTTCACAAAGGACCCTCCACCTGGTAGCCCTTCAAGTAGTAGAAATCCGAGCTTCTCAGAGAAGAACACGAAAGCTGAGATAAACACATTGATCAAGAATCTCATCTCTAAGATAAAAGTTCGGTGGCAATCAGGAAGGAACAGCTCAGGAGAACTGGACATCAAGGATGCAATTCAGACAGCTCTCCAGACGACTGTGATGGATGTTTTGCTCCCAGATCCGCTAACATTTGGTTTCAGACTGGTCAGAAACGGTCTGGAGAAGGATCCTGAGACAAAGGCTGAGTCCCCATTTTCAAAGGGATCTGTTCTGTCACATGAAGTCACTCCTATGGAGGTTCTGGTCCGCAATAACACTAGCGAAGCTATCAAGTTGAATCTAAGTGTTACTTGCAGAGATGTAGCTGGACAGAACTGCACTGAAGGAGCTGATGCCACTGTCCTCTGGGCTGGTGCTCTTAGTGGAATCTCAATGGAAGTAGCGCCGCTGCAAGAAGCAAGACACTGTTTCTCACTCTTCTTCCTTGTTCCAGGAGAGTACACGATGGTAGCAGCTGCTGTAATTGAAGACGCTAACAATGTACTCAGAGCACGAGCAGGAACTGCTTCTCCAAACGAACCCATCTTCTGTCGTGGACCGCCTTTTCATGTCTGTGTAGCTGGAGGTGCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1186

Amino Acids

129.59

Weight (kDa)

5.87

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	12 - 197	2e-19	Trs120/TRAPPC9, N-terminal domain
TRAPPC9-Trs120	PF08626	205 - 268	6.5e-11	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	329 - 496	9.3e-10	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	544 - 644	2e-21	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_2nd	PF26280	694 - 840	4.3e-07	Trs120/TRAPPC9, second Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	860 - 1032	6.7e-14	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	1048 - 1181	1.2e-17	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2633
AatII	GACGTC	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	1120
AccB1I	GGYRCC	2 cut(s)	770, 1269
AccII	CGCG	2 cut(s)	125, 1078
AclWI	GGATC	8 cut(s)	50, 1385, 2010, 2032, 3098, 3146, 3159, 3196
AcoI	YGGCCR	2 cut(s)	735, 954
AcsI	RAATTY	9 cut(s)	212, 335, 439, 530, 1218, 1489, 2139, 2158, 2511
AcuI	CTGAAG	3 cut(s)	533, 1440, 3327
AcyI	GRCGYC	3 cut(s)	12, 581, 1270
AfaI	GTAC	5 cut(s)	2190, 2775, 2838, 3425, 3468
AfiI	CCNNNNNNNGG	7 cut(s)	952, 1050, 1283, 2089, 2396, 2654, 2906
AflII	CTTAAG	1 cut(s)	947
AflIII	ACRYGT	4 cut(s)	1945, 2041, 2197, 2575
AgeI	ACCGGT	1 cut(s)	2866
AjiI	CACGTC	1 cut(s)	650
AjnI	CCWGG	5 cut(s)	397, 1906, 2278, 2905, 3415
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AloI	GAACNNNNNNTCC	2 cut(s)	3478, 3510
Alw21I	GWGCWC	5 cut(s)	655, 1337, 3343, 3478, 3556
Alw26I	GTCTC	7 cut(s)	17, 417, 608, 663, 1315, 2206, 3152
Alw44I	GTGCAC	2 cut(s)	651, 3552
AlwI	GGATC	8 cut(s)	50, 1385, 2010, 2032, 3098, 3146, 3159, 3196
AlwNI	CAGNNNCTG	5 cut(s)	560, 1631, 2019, 3443, 3488
Ama87I	CYCGRG	1 cut(s)	1801
AoxI	GGCC	6 cut(s)	286, 627, 735, 954, 1643, 2432
ApaLI	GTGCAC	2 cut(s)	651, 3552
ApoI	RAATTY	9 cut(s)	212, 335, 439, 530, 1218, 1489, 2139, 2158, 2511
ArsI	GACNNNNNNTTYG	2 cut(s)	3155, 3187
AsiGI	ACCGGT	1 cut(s)	2866
Asp700I	GAANNNNTTC	2 cut(s)	1725, 3490
AspLEI	GCGC	5 cut(s)	127, 381, 1078, 1272, 3370
AspS9I	GGNCC	7 cut(s)	1643, 1892, 2327, 2432, 2896, 3229, 3521
AsuC2I	CCSGG	3 cut(s)	86, 2484, 2819
AsuHPI	GGTGA	6 cut(s)	446, 684, 1730, 2120, 2147, 2760
AvaI	CYCGRG	1 cut(s)	1801
AvaII	GGWCC	5 cut(s)	1892, 2327, 2896, 3229, 3521
BaeGI	GKGCMC	3 cut(s)	655, 2287, 3556
BaeI	ACNNNNGTAYC	1 cut(s)	34
BalI	TGGCCA	2 cut(s)	737, 956
BamHI	GGATCC	1 cut(s)	3151
BanI	GGYRCC	2 cut(s)	770, 1269
BanII	GRGCYC	1 cut(s)	1093
BauI	CACGAG	1 cut(s)	3477
BbsI	GAAGAC	5 cut(s)	584, 2392, 2607, 2719, 3459
Bbv12I	GWGCWC	5 cut(s)	655, 1337, 3343, 3478, 3556
BceAI	ACGGC	4 cut(s)	32, 169, 263, 2507
BcgI	CGANNNNNNTGC	4 cut(s)	1142, 1176, 2184, 2218
BciT130I	CCWGG	5 cut(s)	399, 1908, 2280, 2907, 3417
BclI	TGATCA	2 cut(s)	1860, 2976
BcnI	CCSGG	3 cut(s)	86, 2484, 2819
BcoDI	GTCTC	7 cut(s)	17, 417, 608, 663, 1315, 2206, 3152
BfaI	CTAG	4 cut(s)	600, 1419, 2832, 3243
BfmI	CTRYAG	5 cut(s)	663, 877, 1123, 1413, 1887
BfoI	RGCGCY	3 cut(s)	382, 1273, 3371
BfrI	CTTAAG	1 cut(s)	947
BfuAI	ACCTGC	1 cut(s)	1120
Bme1390I	CCNGG	8 cut(s)	86, 399, 1908, 2280, 2484, 2819, 2907, 3417
Bme18I	GGWCC	5 cut(s)	1892, 2327, 2896, 3229, 3521
BmeT110I	CYCGRG	1 cut(s)	1801
BmgBI	CACGTC	1 cut(s)	650
BmgT120I	GGNCC	7 cut(s)	1643, 1892, 2327, 2432, 2896, 3229, 3521
BmiI	GGNNCC	8 cut(s)	6, 772, 1090, 1271, 2328, 2401, 2898, 3153
BmrFI	CCNGG	8 cut(s)	86, 399, 1908, 2280, 2484, 2819, 2907, 3417
BmrI	ACTGGG	1 cut(s)	1275
BmuI	ACTGGG	1 cut(s)	1275
BpiI	GAAGAC	5 cut(s)	584, 2392, 2607, 2719, 3459
BpmI	CTGGAG	5 cut(s)	768, 1407, 2769, 3056, 3164
Bpu10I	CCTNAGC	5 cut(s)	923, 984, 1355, 1396, 3031
BpuEI	CTTGAG	1 cut(s)	2705
BpuMI	CCSGG	3 cut(s)	86, 2484, 2819
Bsa29I	ATCGAT	2 cut(s)	853, 1162
BsaHI	GRCGYC	3 cut(s)	12, 581, 1270
BsaJI	CCNNGG	9 cut(s)	185, 242, 363, 397, 774, 1093, 2279, 2559, 2751
BsaWI	WCCGGW	2 cut(s)	204, 2866
BsaXI	ACNNNNNCTCC	2 cut(s)	3478, 3508
Bsc4I	CCNNNNNNNGG	7 cut(s)	952, 1050, 1283, 2089, 2396, 2654, 2906
Bse118I	RCCGGY	2 cut(s)	767, 2866
Bse3DI	GCAATG	4 cut(s)	507, 2075, 2411, 2626
BseBI	CCWGG	5 cut(s)	399, 1908, 2280, 2907, 3417
BseCI	ATCGAT	2 cut(s)	853, 1162
BseDI	CCNNGG	9 cut(s)	185, 242, 363, 397, 774, 1093, 2279, 2559, 2751
BseGI	GGATG	7 cut(s)	816, 1232, 1963, 2230, 2602, 3058, 3094
BseLI	CCNNNNNNNGG	7 cut(s)	952, 1050, 1283, 2089, 2396, 2654, 2906
BseMI	GCAATG	4 cut(s)	507, 2075, 2411, 2626
BseRI	GAGGAG	4 cut(s)	222, 629, 1358, 2061
BseSI	GKGCMC	3 cut(s)	655, 2287, 3556
BseYI	CCCAGC	3 cut(s)	643, 1283, 2661
BsgI	GTGCAG	3 cut(s)	1897, 2556, 3286
Bsh1236I	CGCG	2 cut(s)	125, 1078
Bsh1285I	CGRYCG	4 cut(s)	60, 123, 2241, 2818
BshFI	GGCC	6 cut(s)	288, 629, 737, 956, 1645, 2434
BshNI	GGYRCC	2 cut(s)	770, 1269
BshTI	ACCGGT	1 cut(s)	2866
BshVI	ATCGAT	2 cut(s)	853, 1162
BsiEI	CGRYCG	4 cut(s)	60, 123, 2241, 2818
BsiHKAI	GWGCWC	5 cut(s)	655, 1337, 3343, 3478, 3556
BsiHKCI	CYCGRG	1 cut(s)	1801
BsiSI	CCGG	8 cut(s)	85, 195, 205, 376, 768, 2483, 2818, 2867
BslFI	GGGAC	8 cut(s)	101, 285, 292, 660, 1309, 2679, 2834, 3157
BslI	CCNNNNNNNGG	7 cut(s)	952, 1050, 1283, 2089, 2396, 2654, 2906
BsmAI	GTCTC	7 cut(s)	17, 417, 608, 663, 1315, 2206, 3152
BsmFI	GGGAC	8 cut(s)	101, 285, 292, 660, 1309, 2679, 2834, 3157
BsmI	GAATGC	1 cut(s)	2371
BsnI	GGCC	6 cut(s)	288, 629, 737, 956, 1645, 2434
BsoBI	CYCGRG	1 cut(s)	1801
Bsp1286I	GDGCHC	7 cut(s)	655, 1093, 1337, 2287, 3343, 3478, 3556
Bsp19I	CCATGG	1 cut(s)	2559
BspANI	GGCC	6 cut(s)	288, 629, 737, 956, 1645, 2434
BspDI	ATCGAT	2 cut(s)	853, 1162
BspFNI	CGCG	2 cut(s)	125, 1078
BspLI	GGNNCC	8 cut(s)	6, 772, 1090, 1271, 2328, 2401, 2898, 3153
BspMAI	CTGCAG	1 cut(s)	1417
BspMI	ACCTGC	1 cut(s)	1120
BspPI	GGATC	8 cut(s)	50, 1385, 2010, 2032, 3098, 3146, 3159, 3196
BspQI	GCTCTTC	1 cut(s)	2271
BspT107I	GGYRCC	2 cut(s)	770, 1269
BspTI	CTTAAG	1 cut(s)	947
BsrDI	GCAATG	4 cut(s)	507, 2075, 2411, 2626
BsrFI	RCCGGY	2 cut(s)	767, 2866
BssAI	RCCGGY	2 cut(s)	767, 2866
BssECI	CCNNGG	9 cut(s)	185, 242, 363, 397, 774, 1093, 2279, 2559, 2751
BssNI	GRCGYC	3 cut(s)	12, 581, 1270
BssSI	CACGAG	1 cut(s)	3477
BssT1I	CCWWGG	5 cut(s)	242, 774, 1093, 2559, 2751
Bst2BI	CACGAG	1 cut(s)	3477
Bst2UI	CCWGG	5 cut(s)	399, 1908, 2280, 2907, 3417
Bst6I	CTCTTC	2 cut(s)	2271, 3407
BstACI	GRCGYC	3 cut(s)	12, 581, 1270
BstAFI	CTTAAG	1 cut(s)	947
BstAPI	GCANNNNNTGC	3 cut(s)	560, 1409, 3488
BstC8I	GCNNGC	5 cut(s)	276, 565, 954, 1694, 2173
BstDSI	CCRYGG	2 cut(s)	185, 2559
BstF5I	GGATG	7 cut(s)	816, 1232, 1963, 2230, 2602, 3058, 3094
BstFNI	CGCG	2 cut(s)	125, 1078
BstH2I	RGCGCY	3 cut(s)	382, 1273, 3371
BstHHI	GCGC	5 cut(s)	127, 381, 1078, 1272, 3370
BstMAI	GTCTC	7 cut(s)	17, 417, 608, 663, 1315, 2206, 3152
BstMCI	CGRYCG	4 cut(s)	60, 123, 2241, 2818
BstNI	CCWGG	5 cut(s)	399, 1908, 2280, 2907, 3417
BstNSI	RCATGY	5 cut(s)	1949, 2045, 2201, 2324, 2579
BstSCI	CCNGG	8 cut(s)	84, 397, 1906, 2278, 2482, 2817, 2905, 3415
BstSFI	CTRYAG	5 cut(s)	663, 877, 1123, 1413, 1887
BstSLI	GKGCMC	3 cut(s)	655, 2287, 3556
BstUI	CGCG	2 cut(s)	125, 1078
BstV2I	GAAGAC	5 cut(s)	584, 2392, 2607, 2719, 3459
BstX2I	RGATCY	6 cut(s)	1390, 2015, 2024, 3103, 3151, 3188
BstYI	RGATCY	6 cut(s)	1390, 2015, 2024, 3103, 3151, 3188
Bsu15I	ATCGAT	2 cut(s)	853, 1162
BsuRI	GGCC	6 cut(s)	288, 629, 737, 956, 1645, 2434
BsuTUI	ATCGAT	2 cut(s)	853, 1162
BtgI	CCRYGG	2 cut(s)	185, 2559
BtrI	CACGTC	1 cut(s)	650
BtsCI	GGATG	7 cut(s)	816, 1232, 1963, 2230, 2602, 3058, 3094
BtsI	GCAGTG	3 cut(s)	790, 1921, 2362
BveI	ACCTGC	1 cut(s)	1120
Cac8I	GCNNGC	5 cut(s)	276, 565, 954, 1694, 2173
CaiI	CAGNNNCTG	5 cut(s)	560, 1631, 2019, 3443, 3488
CfoI	GCGC	5 cut(s)	127, 381, 1078, 1272, 3370
Cfr10I	RCCGGY	2 cut(s)	767, 2866
Cfr13I	GGNCC	7 cut(s)	1643, 1892, 2327, 2432, 2896, 3229, 3521
ClaI	ATCGAT	2 cut(s)	853, 1162
CseI	GACGC	5 cut(s)	85, 589, 1289, 2713, 3464
CsiI	ACCWGGT	1 cut(s)	2905
Csp6I	GTAC	5 cut(s)	2189, 2774, 2837, 3424, 3467
CspAI	ACCGGT	1 cut(s)	2866
CviQI	GTAC	5 cut(s)	2189, 2774, 2837, 3424, 3467
DinI	GGCGCC	1 cut(s)	1271
DraI	TTTAAA	1 cut(s)	2310
DrdI	GACNNNNNNGTC	1 cut(s)	2633
DseDI	GACNNNNNNGTC	1 cut(s)	2633
EaeI	YGGCCR	2 cut(s)	735, 954
Eam1104I	CTCTTC	2 cut(s)	2271, 3407
EarI	CTCTTC	2 cut(s)	2271, 3407
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	5 cut(s)	242, 774, 1093, 2559, 2751
Eco24I	GRGCYC	1 cut(s)	1093
Eco32I	GATATC	1 cut(s)	851
Eco47I	GGWCC	5 cut(s)	1892, 2327, 2896, 3229, 3521
Eco57I	CTGAAG	3 cut(s)	533, 1440, 3327
Eco88I	CYCGRG	1 cut(s)	1801
EcoO109I	RGGNCCY	1 cut(s)	2896
EcoRI	GAATTC	1 cut(s)	1218
EcoRII	CCWGG	5 cut(s)	397, 1906, 2278, 2905, 3415
EcoRV	GATATC	1 cut(s)	851
EcoT14I	CCWWGG	5 cut(s)	242, 774, 1093, 2559, 2751
EcoT22I	ATGCAT	2 cut(s)	1213, 1296
EcoT38I	GRGCYC	1 cut(s)	1093
EgeI	GGCGCC	1 cut(s)	1271
EheI	GGCGCC	1 cut(s)	1271
ErhI	CCWWGG	5 cut(s)	242, 774, 1093, 2559, 2751
FalI	AAGNNNNNCTT	4 cut(s)	930, 962, 3259, 3291
FaqI	GGGAC	8 cut(s)	101, 285, 292, 660, 1309, 2679, 2834, 3157
FauI	CCCGC	1 cut(s)	2365
FbaI	TGATCA	2 cut(s)	1860, 2976
FokI	GGATG	7 cut(s)	823, 1219, 1970, 2237, 2609, 3065, 3101
FriOI	GRGCYC	1 cut(s)	1093
FspBI	CTAG	4 cut(s)	600, 1419, 2832, 3243
GlaI	GCGC	5 cut(s)	126, 380, 1077, 1271, 3369
GsaI	CCCAGC	3 cut(s)	647, 1287, 2665
GsuI	CTGGAG	5 cut(s)	768, 1407, 2769, 3056, 3164
HaeII	RGCGCY	3 cut(s)	382, 1273, 3371
HaeIII	GGCC	6 cut(s)	288, 629, 737, 956, 1645, 2434
HapII	CCGG	8 cut(s)	85, 195, 205, 376, 768, 2483, 2818, 2867
HgaI	GACGC	5 cut(s)	85, 589, 1289, 2713, 3464
HhaI	GCGC	5 cut(s)	127, 381, 1078, 1272, 3370
Hin1I	GRCGYC	3 cut(s)	12, 581, 1270
Hin6I	GCGC	5 cut(s)	125, 379, 1076, 1270, 3368
HinP1I	GCGC	5 cut(s)	125, 379, 1076, 1270, 3368
HincII	GTYRAC	3 cut(s)	818, 1255, 1963
HindII	GTYRAC	3 cut(s)	818, 1255, 1963
HindIII	AAGCTT	3 cut(s)	925, 2250, 2313
HpaI	GTTAAC	1 cut(s)	1255
HpaII	CCGG	8 cut(s)	85, 195, 205, 376, 768, 2483, 2818, 2867
HphI	GGTGA	6 cut(s)	446, 684, 1730, 2120, 2147, 2760
Hpy99I	CGWCG	1 cut(s)	79
HpyCH4IV	ACGT	3 cut(s)	12, 649, 820
HpySE526I	ACGT	3 cut(s)	12, 649, 820
Hsp92I	GRCGYC	3 cut(s)	12, 581, 1270
HspAI	GCGC	5 cut(s)	125, 379, 1076, 1270, 3368
KasI	GGCGCC	1 cut(s)	1269
Ksp22I	TGATCA	2 cut(s)	1860, 2976
KspAI	GTTAAC	1 cut(s)	1255
LguI	GCTCTTC	1 cut(s)	2271
LmnI	GCTCC	9 cut(s)	111, 1088, 1332, 1639, 1979, 2074, 2851, 3102, 3311
MabI	ACCWGGT	1 cut(s)	2905
MaeI	CTAG	4 cut(s)	600, 1419, 2832, 3243
MaeII	ACGT	3 cut(s)	12, 649, 820
MfeI	CAATTG	1 cut(s)	1139
MflI	RGATCY	6 cut(s)	1390, 2015, 2024, 3103, 3151, 3188
MhlI	GDGCHC	7 cut(s)	655, 1093, 1337, 2287, 3343, 3478, 3556
MlsI	TGGCCA	2 cut(s)	737, 956
MluNI	TGGCCA	2 cut(s)	737, 956
Mly113I	GGCGCC	1 cut(s)	1270
MlyI	GAGTC	4 cut(s)	247, 1331, 2287, 3179
MmeI	TCCRAC	2 cut(s)	1904, 2354
Mox20I	TGGCCA	2 cut(s)	737, 956
Mph1103I	ATGCAT	2 cut(s)	1213, 1296
MroXI	GAANNNNTTC	2 cut(s)	1725, 3490
MscI	TGGCCA	2 cut(s)	737, 956
MseI	TTAA	8 cut(s)	524, 624, 948, 1004, 1034, 1254, 2309, 2859
MslI	CAYNNNNRTG	3 cut(s)	2580, 3215, 3537
Msp20I	TGGCCA	2 cut(s)	737, 956
MspA1I	CMGCKG	6 cut(s)	1016, 1496, 1886, 2737, 3373, 3440
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	8 cut(s)	85, 195, 205, 376, 768, 2483, 2818, 2867
MspR9I	CCNGG	8 cut(s)	86, 399, 1908, 2280, 2484, 2819, 2907, 3417
MunI	CAATTG	1 cut(s)	1139
Mva1269I	GAATGC	1 cut(s)	2371
MvaI	CCWGG	5 cut(s)	399, 1908, 2280, 2907, 3417
MvnI	CGCG	2 cut(s)	125, 1078
NarI	GGCGCC	1 cut(s)	1270
NciI	CCSGG	3 cut(s)	86, 2484, 2819
NcoI	CCATGG	1 cut(s)	2559
NlaIV	GGNNCC	8 cut(s)	6, 772, 1090, 1271, 2328, 2401, 2898, 3153
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	7 cut(s)	325, 1897, 2290, 2302, 2582, 3198, 3208
NsiI	ATGCAT	2 cut(s)	1213, 1296
NspI	RCATGY	5 cut(s)	1949, 2045, 2201, 2324, 2579
PaeR7I	CTCGAG	1 cut(s)	1801
PciI	ACATGT	4 cut(s)	1945, 2041, 2197, 2575
PciSI	GCTCTTC	1 cut(s)	2271
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 182
PctI	GAATGC	1 cut(s)	2371
PdmI	GAANNNNTTC	2 cut(s)	1725, 3490
PflFI	GACNNNGTC	1 cut(s)	28
PfoI	TCCNGGA	2 cut(s)	84, 3415
PinAI	ACCGGT	1 cut(s)	2866
Ple19I	CGATCG	3 cut(s)	60, 123, 2241
PleI	GAGTC	4 cut(s)	246, 1330, 2287, 3178
PluTI	GGCGCC	1 cut(s)	1273
PpsI	GAGTC	4 cut(s)	246, 1330, 2287, 3178
PpuMI	RGGWCCY	1 cut(s)	2896
PscI	ACATGT	4 cut(s)	1945, 2041, 2197, 2575
Psp5II	RGGWCCY	1 cut(s)	2896
Psp6I	CCWGG	5 cut(s)	397, 1906, 2278, 2905, 3415
PspFI	CCCAGC	3 cut(s)	643, 1283, 2661
PspGI	CCWGG	5 cut(s)	397, 1906, 2278, 2905, 3415
PspN4I	GGNNCC	8 cut(s)	6, 772, 1090, 1271, 2328, 2401, 2898, 3153
PspPI	GGNCC	7 cut(s)	1643, 1892, 2327, 2432, 2896, 3229, 3521
PspPPI	RGGWCCY	1 cut(s)	2896
PspXI	VCTCGAGB	1 cut(s)	1801
PstI	CTGCAG	1 cut(s)	1417
PstNI	CAGNNNCTG	5 cut(s)	560, 1631, 2019, 3443, 3488
PsuI	RGATCY	6 cut(s)	1390, 2015, 2024, 3103, 3151, 3188
PsyI	GACNNNGTC	1 cut(s)	28
PvuI	CGATCG	3 cut(s)	60, 123, 2241
PvuII	CAGCTG	4 cut(s)	1016, 1886, 2737, 3440
RsaI	GTAC	5 cut(s)	2190, 2775, 2838, 3425, 3468
RsaNI	GTAC	5 cut(s)	2189, 2774, 2837, 3424, 3467
RseI	CAYNNNNRTG	3 cut(s)	2580, 3215, 3537
SapI	GCTCTTC	1 cut(s)	2271
SaqAI	TTAA	8 cut(s)	524, 624, 948, 1004, 1034, 1254, 2309, 2859
Sau96I	GGNCC	7 cut(s)	1643, 1892, 2327, 2432, 2896, 3229, 3521
SchI	GAGTC	4 cut(s)	247, 1331, 2287, 3179
ScrFI	CCNGG	8 cut(s)	86, 399, 1908, 2280, 2484, 2819, 2907, 3417
SduI	GDGCHC	7 cut(s)	655, 1093, 1337, 2287, 3343, 3478, 3556
SexAI	ACCWGGT	1 cut(s)	2905
SfcI	CTRYAG	5 cut(s)	663, 877, 1123, 1413, 1887
SfoI	GGCGCC	1 cut(s)	1271
Sfr274I	CTCGAG	1 cut(s)	1801
SinI	GGWCC	5 cut(s)	1892, 2327, 2896, 3229, 3521
SlaI	CTCGAG	1 cut(s)	1801
SmiMI	CAYNNNNRTG	3 cut(s)	2580, 3215, 3537
SmlI	CTYRAG	3 cut(s)	947, 1801, 2684
SmoI	CTYRAG	3 cut(s)	947, 1801, 2684
SspDI	GGCGCC	1 cut(s)	1269
SspMI	CTAG	4 cut(s)	600, 1419, 2832, 3243
StyD4I	CCNGG	8 cut(s)	84, 397, 1906, 2278, 2482, 2817, 2905, 3415
StyI	CCWWGG	5 cut(s)	242, 774, 1093, 2559, 2751
TaiI	ACGT	3 cut(s)	15, 652, 823
TatI	WGTACW	4 cut(s)	2188, 2773, 3423, 3466
TauI	GCSGC	2 cut(s)	515, 3373
Tru1I	TTAA	8 cut(s)	524, 624, 948, 1004, 1034, 1254, 2309, 2859
Tru9I	TTAA	8 cut(s)	524, 624, 948, 1004, 1034, 1254, 2309, 2859
TseFI	GTSAC	7 cut(s)	325, 1897, 2290, 2302, 2582, 3198, 3208
Tsp45I	GTSAC	7 cut(s)	325, 1897, 2290, 2302, 2582, 3198, 3208
TspGWI	ACGGA	3 cut(s)	98, 1120, 2412
Tth111I	GACNNNGTC	1 cut(s)	28
Vha464I	CTTAAG	1 cut(s)	947
VneI	GTGCAC	2 cut(s)	651, 3552
VpaK11BI	GGWCC	5 cut(s)	1892, 2327, 2896, 3229, 3521
XapI	RAATTY	9 cut(s)	212, 335, 439, 530, 1218, 1489, 2139, 2158, 2511
XceI	RCATGY	5 cut(s)	1949, 2045, 2201, 2324, 2579
XhoI	CTCGAG	1 cut(s)	1801
XmnI	GAANNNNTTC	2 cut(s)	1725, 3490
XspI	CTAG	4 cut(s)	600, 1419, 2832, 3243
ZraI	GACGTC	1 cut(s)	13
Zsp2I	ATGCAT	2 cut(s)	1213, 1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.