Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

57512130 .. 57518663

Gene Structure 6534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG380900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2982 bp

ATGCAGGTTATAAAGGCGAAGAAGCGGAGGCTTGGGCGTGCACAGAAGACTATGGGTGATTATTGCTTGTTGGCAGGATCACCGGTTGATGCCAATCTTCATTACTCTACTGCACTGGAACTTGCTAGGTTGACCGGAGATTTTTTTTGGTATGCTGGTGCATTGGAGGGAAGCGTTTGTGCATTACTGATTGATCGAATGGGCCAAAAGGATACAGCCGTGGAAGAGGAAGTTAGATATCGGTATAGTAGTGTCATTTTGCACTACAGGAAGTCGTTCATACAAGAGAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTGGCAAGGTTTCTTTGCAGACGTGAGCTGGCTAGGGAGGTAGTGGAGCTACTAACAAATGCAGCAGATGGTGCGAAATCTCTGATTGATGCCAGTGATAGACTTGTGCTTTATGTTGAAATAGCTCGTTTATATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTCTTGCAATGACCACAAAAGCATATCGTGTTCAGAGTAAAGCTTCAACCTTGGAAGATTCTGTTCCCAAAAAGGAAACTGGATCAAGTGTTGCTGAGGGTGGGAAAATGCTCCATCAGTCGGTAGTCTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCGTGGGGTGCAGCTGCAAGACTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAAATGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCCTCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTGTATTCTTTTCCTCTCCATCCCTCACAAATGGACATTGTAAAGCGCAATCCTGCTAGAGAAGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTATACGCCATTCAGCAAGGGAGAGCCAAGCAATAACAGCAAACAGGAGCTGATTTGGATTGTTGGAGAACCAGTTCAGATTTTGGTGGAACTGGCAAACCCATGCGGCTTTGATTTGAGGGTCGATAGTATATATCTCTCTGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCACTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATCCCAACTTCAGTAGGGCCAGTGACAATTCCTGGGTGCACCGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTTTCTGACCCTTTCAGATGCTGTGGGTCTGCAAGGTTGAAAAATATATCTGTTCCAAGTATTTCTGTAGTACCGCCACTGCCATTACTGGTTTCACGTGTTGTTGGTGGTGATGGTGCAATCATTCTACACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACGGTTCCAGTTGAGCAAGTCCATGTATCGCTATCTGGAAAACACCAAGATTCTGTTCTCTTTATTGCATCTGAAACCTTAAAATCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATTCCTGTGACTTTAAAAGCTTGGCGAATTGTCTTAGCGGATGCAGATACTGCTGCTGGCAGGAGTGCCTCTAAGCACTCTAAGGATGGAAATAGCCCCACATTGTTGATCCATTATGCAGGGACTCTGCCAAATACTGGAGATCCTTCAACAGAAAAGTCGGTTGTCCCACCTGGCAGACGCCTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCGATGGAGATTCCTGCACAAGTAGGTGAAAACCTTCCGAAGCCAGTTCATATTGACAATAGTCTTACTGAAGGAGCTGTGGGCACTCCAAATAAGATGGACAGATTGGTGAAAATTGATCCTTTTAGAGGAAGCTGGGGACTACGCTTCCTTGAACTTGAGTTGTCTAATCCAACTGATGTTGTCTTTGAAATTAGTGTTTCAGTCCAACTGGAGAACACCGATCATGAGCATAGCCTCTCCGTTGATCGAGATGCTACTGAGTATGGTTACCCTAAAACAAGAATTGATCGAGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAATTGCCTGTTCTTGATGATTCTTTTTTTGTAAAAGATAATCAAGCTGATGGGAGTGGCAGAAGTTATAGCTTTTCAGAAAGGAATACGAAAGCTGAACTTAATGCCTCTATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGCTCTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCATTAACATTTTGCTTCAGGCTTTCCAGAAATGGCCCTGGACCTGAAAATATTGATTCCCATGTAGAATCCAATGATCAAGTTGACTCTTCTGCTTCTAAAGGTTCTGTGATGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAATTAATCAAGATGAGTCTTAACGTTGTGTGCAGAGATGTTGCGGGAGAGGATTGTGTAGAGTGTGCAAATGCAACTGTCTTATGTTCTGGTGTTTTGGGTGGGATAACCATGGAGGTTCCACCGCTTGAAGAAATCAAGCATTCTTTCTCTTTGTATTTTCTCGTCCCCGGGGAGTACACACTAATAGCGGCTGCCATGATCGAAGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACCAAATCCTCTGATGAGCCGATCTTCTGTCGTGGCCCTCCATATCATGTCCGGGTTGTTGGCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

993

Amino Acids

108.31

Weight (kDa)

6.48

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	5 - 64	3.2e-10	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	126 - 295	7.4e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	343 - 442	3.2e-20	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	680 - 833	2.4e-12	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	858 - 989	2.9e-13	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AarI	CACCTGC	1 cut(s)	856
Acc36I	ACCTGC	2 cut(s)	508, 856
AccB7I	CCANNNNNTGG	1 cut(s)	1826
AciI	CCGC	8 cut(s)	25, 890, 1152, 1466, 1727, 2714, 2795, 2861
AclI	AACGTT	1 cut(s)	2694
AclWI	GGATC	9 cut(s)	85, 667, 779, 900, 1264, 1277, 1792, 1826, 2048
AcsI	RAATTY	2 cut(s)	1201, 1533
AcuI	CTGAAG	5 cut(s)	1179, 1263, 2025, 2459, 2509
AcvI	CACGTG	1 cut(s)	1490
AcyI	GRCGYC	1 cut(s)	1870
AfaI	GTAC	7 cut(s)	747, 1464, 1570, 2247, 2463, 2496, 2849
AfiI	CCNNNNNNNGG	4 cut(s)	697, 1348, 1826, 2063
AflIII	ACRYGT	1 cut(s)	1489
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	9 cut(s)	320, 337, 458, 624, 1432, 1839, 2090, 2126, 2801
AjiI	CACGTC	1 cut(s)	362
AjnI	CCWGG	5 cut(s)	1300, 1672, 1861, 1872, 2545
AjuI	GAANNNNNNNTTGG	2 cut(s)	1608, 1640
AleI	CACNNNNGTG	1 cut(s)	1527
AloI	GAACNNNNNNTCC	2 cut(s)	1104, 1136
Alw21I	GWGCWC	4 cut(s)	43, 731, 877, 1310
Alw26I	GTCTC	2 cut(s)	709, 723
Alw44I	GTGCAC	3 cut(s)	39, 873, 1306
AlwI	GGATC	9 cut(s)	85, 667, 779, 900, 1264, 1277, 1792, 1826, 2048
AlwNI	CAGNNNCTG	4 cut(s)	1096, 1223, 1413, 1739
Ama87I	CYCGRG	1 cut(s)	2840
AoxI	GGCC	7 cut(s)	202, 862, 1037, 1286, 1670, 2542, 2944
ApaLI	GTGCAC	3 cut(s)	39, 873, 1306
ApoI	RAATTY	2 cut(s)	1201, 1533
AseI	ATTAAT	1 cut(s)	2675
AsiGI	ACCGGT	1 cut(s)	82
Asp700I	GAANNNNTTC	3 cut(s)	275, 1119, 1968
AspLEI	GCGC	2 cut(s)	993, 2626
AspS9I	GGNCC	6 cut(s)	202, 1037, 1286, 2543, 2549, 2945
AsuC2I	CCSGG	3 cut(s)	2841, 2842, 2963
AsuHPI	GGTGA	7 cut(s)	68, 72, 297, 1514, 1541, 1973, 2056
AvaI	CYCGRG	1 cut(s)	2840
AvaII	GGWCC	1 cut(s)	2549
AxyI	CCTNAGG	2 cut(s)	904, 2894
BaeGI	GKGCMC	4 cut(s)	43, 877, 1310, 2021
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BamHI	GGATCC	1 cut(s)	1269
BanII	GRGCYC	1 cut(s)	2902
BauI	CACGAG	1 cut(s)	2901
BbrPI	CACGTG	1 cut(s)	1490
BbsI	GAAGAC	2 cut(s)	53, 1014
Bbv12I	GWGCWC	4 cut(s)	43, 731, 877, 1310
BbvCI	CCTCAGC	1 cut(s)	672
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	5 cut(s)	1302, 1674, 1863, 1874, 2547
BciVI	GTATCC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	2584
BcnI	CCSGG	3 cut(s)	2841, 2842, 2963
BcoDI	GTCTC	2 cut(s)	709, 723
BfaI	CTAG	5 cut(s)	126, 372, 870, 1002, 2397
BfmI	CTRYAG	2 cut(s)	265, 1458
BfuAI	ACCTGC	2 cut(s)	508, 856
BfuI	GTATCC	1 cut(s)	205
Bme1390I	CCNGG	8 cut(s)	1302, 1674, 1863, 1874, 2547, 2841, 2842, 2963
Bme18I	GGWCC	1 cut(s)	2549
BmeT110I	CYCGRG	1 cut(s)	2840
BmgBI	CACGTC	1 cut(s)	362
BmgT120I	GGNCC	6 cut(s)	202, 1037, 1286, 2543, 2549, 2945
BmiI	GGNNCC	3 cut(s)	1271, 1575, 2790
BmrFI	CCNGG	8 cut(s)	1302, 1674, 1863, 1874, 2547, 2841, 2842, 2963
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	9 cut(s)	79, 418, 1198, 1400, 1646, 1720, 2179, 2446, 2869
BmuI	ACTGGG	1 cut(s)	1044
BoxI	GACNNNNGTC	1 cut(s)	1995
BpiI	GAAGAC	2 cut(s)	53, 1014
BpmI	CTGGAG	6 cut(s)	1041, 1695, 1848, 2168, 2279, 2457
Bpu10I	CCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	4 cut(s)	344, 496, 1687, 2114
BpuMI	CCSGG	3 cut(s)	2841, 2842, 2963
BsaAI	YACGTR	1 cut(s)	1490
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	1870
BsaJI	CCNNGG	9 cut(s)	219, 627, 1301, 1369, 2545, 2781, 2839, 2840, 2841
BsaWI	WCCGGW	2 cut(s)	82, 134
BsaXI	ACNNNNNCTCC	4 cut(s)	1104, 1134, 1668, 1698
Bsc4I	CCNNNNNNNGG	4 cut(s)	697, 1348, 1826, 2063
Bse118I	RCCGGY	1 cut(s)	82
Bse21I	CCTNAGG	2 cut(s)	904, 2894
Bse3DI	GCAATG	2 cut(s)	576, 591
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	5 cut(s)	1302, 1674, 1863, 1874, 2547
BseDI	CCNNGG	9 cut(s)	219, 627, 1301, 1369, 2545, 2781, 2839, 2840, 2841
BseGI	GGATG	6 cut(s)	964, 1357, 1735, 1780, 2461, 2497
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	697, 1348, 1826, 2063
BseMI	GCAATG	2 cut(s)	576, 591
BseMII	CTCAG	7 cut(s)	308, 539, 663, 734, 918, 2187, 2908
BseSI	GKGCMC	4 cut(s)	43, 877, 1310, 2021
BseYI	CCCAGC	2 cut(s)	851, 2070
BsgI	GTGCAG	4 cut(s)	96, 825, 1935, 2722
BshFI	GGCC	7 cut(s)	204, 864, 1039, 1288, 1672, 2544, 2946
BshTI	ACCGGT	1 cut(s)	82
BsiHKAI	GWGCWC	4 cut(s)	43, 731, 877, 1310
BsiHKCI	CYCGRG	1 cut(s)	2840
BsiSI	CCGG	4 cut(s)	83, 135, 2841, 2962
BslFI	GGGAC	4 cut(s)	1825, 1841, 2088, 2822
BslI	CCNNNNNNNGG	4 cut(s)	697, 1348, 1826, 2063
BsmAI	GTCTC	2 cut(s)	709, 723
BsmFI	GGGAC	4 cut(s)	1825, 1841, 2088, 2822
BsmI	GAATGC	2 cut(s)	295, 2812
BsnI	GGCC	7 cut(s)	204, 864, 1039, 1288, 1672, 2544, 2946
BsoBI	CYCGRG	1 cut(s)	2840
Bsp1286I	GDGCHC	6 cut(s)	43, 731, 877, 1310, 2021, 2902
Bsp1407I	TGTACA	1 cut(s)	2461
Bsp19I	CCATGG	1 cut(s)	2781
BspACI	CCGC	8 cut(s)	25, 890, 1152, 1466, 1727, 2714, 2795, 2861
BspANI	GGCC	7 cut(s)	204, 864, 1039, 1288, 1672, 2544, 2946
BspCNI	CTCAG	7 cut(s)	307, 538, 664, 733, 917, 2188, 2907
BspHI	TCATGA	1 cut(s)	2161
BspLI	GGNNCC	3 cut(s)	1271, 1575, 2790
BspMI	ACCTGC	2 cut(s)	508, 856
BspPI	GGATC	9 cut(s)	85, 667, 779, 900, 1264, 1277, 1792, 1826, 2048
BsrDI	GCAATG	2 cut(s)	576, 591
BsrFI	RCCGGY	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	2461
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	9 cut(s)	219, 627, 1301, 1369, 2545, 2781, 2839, 2840, 2841
BssNI	GRCGYC	1 cut(s)	1870
BssSI	CACGAG	1 cut(s)	2901
BssT1I	CCWWGG	3 cut(s)	627, 1369, 2781
Bst2BI	CACGAG	1 cut(s)	2901
Bst2UI	CCWGG	5 cut(s)	1302, 1674, 1863, 1874, 2547
Bst4CI	ACNGT	4 cut(s)	1225, 1312, 1573, 2749
Bst6I	CTCTTC	2 cut(s)	219, 2602
BstACI	GRCGYC	1 cut(s)	1870
BstAPI	GCANNNNNTGC	2 cut(s)	410, 1739
BstAUI	TGTACA	1 cut(s)	2461
BstBAI	YACGTR	1 cut(s)	1490
BstC8I	GCNNGC	3 cut(s)	39, 369, 1747
BstDSI	CCRYGG	2 cut(s)	219, 2781
BstEII	GGTNACC	1 cut(s)	2204
BstENI	CCTNNNNNAGG	2 cut(s)	1346, 2061
BstF5I	GGATG	6 cut(s)	964, 1357, 1735, 1780, 2461, 2497
BstHHI	GCGC	2 cut(s)	993, 2626
BstMAI	GTCTC	2 cut(s)	709, 723
BstNI	CCWGG	5 cut(s)	1302, 1674, 1863, 1874, 2547
BstPAI	GACNNNNGTC	1 cut(s)	1995
BstPI	GGTNACC	1 cut(s)	2204
BstSCI	CCNGG	8 cut(s)	1300, 1672, 1861, 1872, 2545, 2839, 2840, 2961
BstSFI	CTRYAG	2 cut(s)	265, 1458
BstSLI	GKGCMC	4 cut(s)	43, 877, 1310, 2021
BstV2I	GAAGAC	2 cut(s)	53, 1014
BstX2I	RGATCY	3 cut(s)	784, 1269, 1831
BstXI	CCANNNNNNTGG	1 cut(s)	1322
BstYI	RGATCY	3 cut(s)	784, 1269, 1831
Bsu36I	CCTNAGG	2 cut(s)	904, 2894
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	7 cut(s)	204, 864, 1039, 1288, 1672, 2544, 2946
BtgI	CCRYGG	2 cut(s)	219, 2781
BtrI	CACGTC	1 cut(s)	362
BtsCI	GGATG	6 cut(s)	964, 1357, 1735, 1780, 2461, 2497
BtsI	GCAGTG	3 cut(s)	1315, 1469, 2973
BtsIMutI	CAGTG	9 cut(s)	113, 439, 728, 1221, 1296, 1315, 1469, 2255, 2973
BveI	ACCTGC	2 cut(s)	508, 856
Cac8I	GCNNGC	3 cut(s)	39, 369, 1747
CaiI	CAGNNNCTG	4 cut(s)	1096, 1223, 1413, 1739
CciI	TCATGA	1 cut(s)	2161
CfoI	GCGC	2 cut(s)	993, 2626
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	6 cut(s)	202, 1037, 1286, 2543, 2549, 2945
Cfr9I	CCCGGG	1 cut(s)	2840
CseI	GACGC	1 cut(s)	1878
Csp6I	GTAC	7 cut(s)	746, 1463, 1569, 2246, 2462, 2495, 2848
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	8 cut(s)	1149, 1592, 2162, 2570, 2627, 2782, 2869, 2957
CviQI	GTAC	7 cut(s)	746, 1463, 1569, 2246, 2462, 2495, 2848
DraI	TTTAAA	2 cut(s)	1704, 2269
Eam1104I	CTCTTC	2 cut(s)	219, 2602
EarI	CTCTTC	2 cut(s)	219, 2602
Eco130I	CCWWGG	3 cut(s)	627, 1369, 2781
Eco147I	AGGCCT	1 cut(s)	1672
Eco24I	GRGCYC	1 cut(s)	2902
Eco32I	GATATC	2 cut(s)	239, 2890
Eco47I	GGWCC	1 cut(s)	2549
Eco57I	CTGAAG	5 cut(s)	1179, 1263, 2025, 2459, 2509
Eco72I	CACGTG	1 cut(s)	1490
Eco81I	CCTNAGG	2 cut(s)	904, 2894
Eco88I	CYCGRG	1 cut(s)	2840
Eco91I	GGTNACC	1 cut(s)	2204
EcoNI	CCTNNNNNAGG	2 cut(s)	1346, 2061
EcoO65I	GGTNACC	1 cut(s)	2204
EcoRII	CCWGG	5 cut(s)	1300, 1672, 1861, 1872, 2545
EcoRV	GATATC	2 cut(s)	239, 2890
EcoT14I	CCWWGG	3 cut(s)	627, 1369, 2781
EcoT38I	GRGCYC	1 cut(s)	2902
ErhI	CCWWGG	3 cut(s)	627, 1369, 2781
FaeI	CATG	8 cut(s)	1152, 1595, 2165, 2573, 2630, 2785, 2872, 2960
FalI	AAGNNNNNCTT	2 cut(s)	2352, 2384
FaqI	GGGAC	4 cut(s)	1825, 1841, 2088, 2822
FatI	CATG	8 cut(s)	1148, 1591, 2161, 2569, 2626, 2781, 2868, 2956
FauI	CCCGC	1 cut(s)	2707
FbaI	TGATCA	1 cut(s)	2584
FokI	GGATG	6 cut(s)	951, 1364, 1742, 1787, 2468, 2504
FriOI	GRGCYC	1 cut(s)	2902
FspBI	CTAG	5 cut(s)	126, 372, 870, 1002, 2397
GlaI	GCGC	2 cut(s)	992, 2625
GsaI	CCCAGC	2 cut(s)	855, 2074
GsuI	CTGGAG	6 cut(s)	1041, 1695, 1848, 2168, 2279, 2457
HaeIII	GGCC	7 cut(s)	204, 864, 1039, 1288, 1672, 2544, 2946
HapII	CCGG	4 cut(s)	83, 135, 2841, 2962
HgaI	GACGC	1 cut(s)	1878
HhaI	GCGC	2 cut(s)	993, 2626
Hin1I	GRCGYC	1 cut(s)	1870
Hin1II	CATG	8 cut(s)	1152, 1595, 2165, 2573, 2630, 2785, 2872, 2960
Hin6I	GCGC	2 cut(s)	991, 2624
HinP1I	GCGC	2 cut(s)	991, 2624
HincII	GTYRAC	3 cut(s)	132, 1357, 2593
HindII	GTYRAC	3 cut(s)	132, 1357, 2593
HindIII	AAGCTT	2 cut(s)	618, 1707
HpaII	CCGG	4 cut(s)	83, 135, 2841, 2962
HphI	GGTGA	7 cut(s)	68, 72, 297, 1514, 1541, 1973, 2056
Hpy166II	GTNNAC	8 cut(s)	41, 132, 875, 1308, 1315, 1357, 2593, 2850
Hpy8I	GTNNAC	8 cut(s)	41, 132, 875, 1308, 1315, 1357, 2593, 2850
HpyAV	CCTTC	7 cut(s)	1203, 1520, 1670, 1845, 1979, 2000, 2483
HpyCH4III	ACNGT	4 cut(s)	1225, 1312, 1573, 2749
HpyCH4IV	ACGT	3 cut(s)	361, 1489, 2694
HpySE526I	ACGT	3 cut(s)	361, 1489, 2694
Hsp92I	GRCGYC	1 cut(s)	1870
Hsp92II	CATG	8 cut(s)	1152, 1595, 2165, 2573, 2630, 2785, 2872, 2960
HspAI	GCGC	2 cut(s)	991, 2624
Ksp22I	TGATCA	1 cut(s)	2584
LmnI	GCTCC	9 cut(s)	385, 693, 726, 1022, 1093, 1373, 1676, 2009, 2260
LweI	GCATC	9 cut(s)	79, 418, 1198, 1400, 1646, 1720, 2179, 2446, 2869
MaeI	CTAG	5 cut(s)	126, 372, 870, 1002, 2397
MaeII	ACGT	3 cut(s)	361, 1489, 2694
MaeIII	GTNAC	7 cut(s)	1219, 1255, 1291, 1684, 1696, 2204, 2657
MflI	RGATCY	3 cut(s)	784, 1269, 1831
MhlI	GDGCHC	6 cut(s)	43, 731, 877, 1310, 2021, 2902
MlyI	GAGTC	5 cut(s)	725, 1807, 2588, 2629, 2695
MmeI	TCCRAC	3 cut(s)	1090, 2132, 2167
MroXI	GAANNNNTTC	3 cut(s)	275, 1119, 1968
MslI	CAYNNNNRTG	1 cut(s)	1527
MspA1I	CMGCKG	2 cut(s)	809, 890
MspI	CCGG	4 cut(s)	83, 135, 2841, 2962
MspR9I	CCNGG	8 cut(s)	1302, 1674, 1863, 1874, 2547, 2841, 2842, 2963
Mva1269I	GAATGC	2 cut(s)	295, 2812
MvaI	CCWGG	5 cut(s)	1302, 1674, 1863, 1874, 2547
NciI	CCSGG	3 cut(s)	2841, 2842, 2963
NcoI	CCATGG	1 cut(s)	2781
NlaIII	CATG	8 cut(s)	1152, 1595, 2165, 2573, 2630, 2785, 2872, 2960
NlaIV	GGNNCC	3 cut(s)	1271, 1575, 2790
NmuCI	GTSAC	5 cut(s)	1219, 1255, 1291, 1684, 1696
OliI	CACNNNNGTG	1 cut(s)	1527
PagI	TCATGA	1 cut(s)	2161
PaqCI	CACCTGC	1 cut(s)	856
PceI	AGGCCT	1 cut(s)	1672
PctI	GAATGC	2 cut(s)	295, 2812
PdmI	GAANNNNTTC	3 cut(s)	275, 1119, 1968
PfeI	GAWTC	6 cut(s)	635, 1619, 1945, 2288, 2564, 2576
PflMI	CCANNNNNTGG	1 cut(s)	1826
PinAI	ACCGGT	1 cut(s)	82
PleI	GAGTC	5 cut(s)	724, 1807, 2588, 2629, 2694
PmaCI	CACGTG	1 cut(s)	1490
PmlI	CACGTG	1 cut(s)	1490
PpsI	GAGTC	5 cut(s)	724, 1807, 2588, 2629, 2694
Ppu21I	YACGTR	1 cut(s)	1490
PshAI	GACNNNNGTC	1 cut(s)	1995
PshBI	ATTAAT	1 cut(s)	2675
PsiI	TTATAA	1 cut(s)	11
Psp1406I	AACGTT	1 cut(s)	2694
Psp6I	CCWGG	5 cut(s)	1300, 1672, 1861, 1872, 2545
PspCI	CACGTG	1 cut(s)	1490
PspEI	GGTNACC	1 cut(s)	2204
PspFI	CCCAGC	2 cut(s)	851, 2070
PspGI	CCWGG	5 cut(s)	1300, 1672, 1861, 1872, 2545
PspN4I	GGNNCC	3 cut(s)	1271, 1575, 2790
PspPI	GGNCC	6 cut(s)	202, 1037, 1286, 2543, 2549, 2945
PstNI	CAGNNNCTG	4 cut(s)	1096, 1223, 1413, 1739
PsuI	RGATCY	3 cut(s)	784, 1269, 1831
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	7 cut(s)	747, 1464, 1570, 2247, 2463, 2496, 2849
RsaNI	GTAC	7 cut(s)	746, 1463, 1569, 2246, 2462, 2495, 2848
RseI	CAYNNNNRTG	1 cut(s)	1527
Sau96I	GGNCC	6 cut(s)	202, 1037, 1286, 2543, 2549, 2945
SchI	GAGTC	5 cut(s)	725, 1807, 2588, 2629, 2695
ScrFI	CCNGG	8 cut(s)	1302, 1674, 1863, 1874, 2547, 2841, 2842, 2963
SduI	GDGCHC	6 cut(s)	43, 731, 877, 1310, 2021, 2902
SfaNI	GCATC	9 cut(s)	79, 418, 1198, 1400, 1646, 1720, 2179, 2446, 2869
SfcI	CTRYAG	2 cut(s)	265, 1458
SinI	GGWCC	1 cut(s)	2549
SmaI	CCCGGG	1 cut(s)	2842
SmiMI	CAYNNNNRTG	1 cut(s)	1527
SmlI	CTYRAG	4 cut(s)	323, 511, 1666, 2093
SmoI	CTYRAG	4 cut(s)	323, 511, 1666, 2093
SseBI	AGGCCT	1 cut(s)	1672
SsiI	CCGC	8 cut(s)	25, 890, 1152, 1466, 1727, 2714, 2795, 2861
SspI	AATATT	1 cut(s)	2560
SspMI	CTAG	5 cut(s)	126, 372, 870, 1002, 2397
StuI	AGGCCT	1 cut(s)	1672
StyD4I	CCNGG	8 cut(s)	1300, 1672, 1861, 1872, 2545, 2839, 2840, 2961
StyI	CCWWGG	3 cut(s)	627, 1369, 2781
TaaI	ACNGT	4 cut(s)	1225, 1312, 1573, 2749
TaiI	ACGT	3 cut(s)	364, 1492, 2697
TaqI	TCGA	6 cut(s)	196, 1170, 1937, 2185, 2227, 2874
TatI	WGTACW	4 cut(s)	745, 2461, 2494, 2847
TauI	GCSGC	2 cut(s)	1155, 2864
TfiI	GAWTC	6 cut(s)	635, 1619, 1945, 2288, 2564, 2576
TscAI	CASTG	9 cut(s)	120, 439, 728, 1228, 1296, 1322, 1476, 2262, 2980
TseFI	GTSAC	5 cut(s)	1219, 1255, 1291, 1684, 1696
Tsp45I	GTSAC	5 cut(s)	1219, 1255, 1291, 1684, 1696
TspDTI	ATGAA	6 cut(s)	89, 268, 928, 1233, 1973, 2643
TspGWI	ACGGA	1 cut(s)	2167
TspMI	CCCGGG	1 cut(s)	2840
TspRI	CASTG	9 cut(s)	120, 439, 728, 1228, 1296, 1322, 1476, 2262, 2980
Van91I	CCANNNNNTGG	1 cut(s)	1826
VneI	GTGCAC	3 cut(s)	39, 873, 1306
VpaK11BI	GGWCC	1 cut(s)	2549
VspI	ATTAAT	1 cut(s)	2675
XagI	CCTNNNNNAGG	2 cut(s)	1346, 2061
XapI	RAATTY	2 cut(s)	1201, 1533
XbaI	TCTAGA	1 cut(s)	2396
XmaI	CCCGGG	1 cut(s)	2840
XmnI	GAANNNNTTC	3 cut(s)	275, 1119, 1968
XspI	CTAG	5 cut(s)	126, 372, 870, 1002, 2397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.