Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Reverse (-)

7993803 .. 7999290

Gene Structure 5488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3333 bp

ATGGAGCCGGACGTTAGCATCGAAACCAGCTCCATGATCCGTGTGGCTGTCCTCCCCATCGGCCACGTGCCCCCCGTCCTCCTCCGCGACTACCACTCGATGCTGCTCCGCCACCAGACGATCCCTCTCTCCGCCATCAGCTCCTTCTACACTGAGCACCAGAAGTCCCCCTTCGCCCACCAGCCCTGGGATTCCGGCAACCTCCGATTCAAGTTCGTCCTCGGCGGGGCCCCACCGTCGCCGTGGGAGGATTTCCAGTCCAATCGCAAAACCTTAGCTGTCATCGGCATCTGCCACTGCCCCTCGTCTCCCGATCTCGACTCCGTCATCGATCAATTCGACTCGGCTCGCCGCGCCTACTCCTCCGCCCTCGAGATCGATCGCTGCTTCGCCTTCTGCCCCGGCGATTCTCAGTTGGAGGATGGGAGCAAGAAAGGAGGGAACTTGATGCTGTTTCCGCCGGCGGATCGGGCGACTCTGGAGTTCCACCTGCAGACAATGATGCAGGACATTGCGGCATCACTGTTGATGGAGTTCGAGAAATGGGTGCTGAAAGCTGAGCCTGCAGGAACCATTGTCAAGACGCCTTTGGATTCTCAAGCCACTCTCAACTCAGAGGAGGTTATAAAGGCGAAGAAGCGGAGGCTTGGGCGAGCGCAGAAGACAATGGGTGATTATTGCTTGTTGGCAGGATCACCTGTTGATGCCAATGCTCATTACTCTACTGCACTAGAACTTGCTAGGTTGACTGGAGATTTTTTCTGGTATGCTGGTGCATTGGAGGGCAGTGTCTGTGCCTTACTGATTGATCGAATGGGCGAAAGGGATTCAGGTGTCGATGATGAAGTTAGATATCGATACAGTAGTGTCATCTTGCACTACAGGAAGTCATTTATACAAGAAAATGCTCAAAGAGTTTCACCCTTAACATTTGAACTAGAGGCTACATTGAAACTGGCAAGGTTTCTTTGCAGACGGGAGCTGGCTAAGGAGGTAGTGGAACTACTTACAAGTGCAGCAGATGGTGCTAAATCTCTGATTGATGCCAGTGATAGACTTGTTTTATATGTTGAAATAGCTCGTTTATATGGAACTCTTGGTTATCAGCGAAAGGCTGCTTTTTTCTCAAGGCAAGTGGCTCAGTTATATCTACAGCAGGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTTTGGCAATGACAACAAGAGCCTACCATGTTCAAAGTAGAGCTTCCATCTCTGAAGACTCGCTTCCTAAAAAGGAAATTGGGTCAAGTCTTGCAGAGGGTGGGAAAATGCTCCACCAGTCAGTTGTCTCTCTTTTTGAGTCTCAGTGGAGCACACTACAGATGGTTGTACTCAGAGAGATTCTGCTATCCGCTGTCCGTGCAGGAGATCCTCTTGCTGCCTGGGGTGCAGCTGCAAGATTACTAAGATCATATTATCCCTTAATTACACCTGCTGGGCAAAATGGTCTTGCTAGTGCACTTTCAAATTCAGCAGATAGGTTGCCATCGGGAACTCGCTGTGCTGACCCTGCTTTACCTTTCATCAGATTGTATTCTTTTCCTCTCCATCCTTCACAAATGGACATTGTAAAGCGCAATCCAGGAAGAGAAGACTGGTGGGCAGGAGCTGCTAATACTGGTCCGTTTATTTATACACCATTCAGCAAGGGAGACACAAACAGTAATGCCAAACAGGACCTCGTTTGGATTGTTGGAGAACCTGTTCAGATTTTAGTCGAACTGGCAAACCCTTGTGGCTTTGATTTGAGGGTTGATAGCATATATCTCTCAGTGCCTTCAGGAAATTTTGATGCTTTTCCTGTTACTGTGAATCTTCCACCCAATTCATCAAAAGTGATCACCTTATCTGGGAAACGATCGATCCCGATTGCAGTTGGGCCAGTGACAATTCCTGGGTGCACTGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGATAATCTGCTTCTTGGAGCTACACAAGGACTTGTGCTTTCTGACCCTTTCAGATGCTGTGGGTCTGCGAGGCTGAAAAACATATCTGTTCCGAACATTTCTGTGGTACCACCATTACCATTGCTGGTTTCACGTGTAGTTGGTGGTGATGGTGCAATCATTCTTCATGAGGGTGAAATTCGTGATGTGTGGATCAGTCTGGCTAATGCAGGTACAGTTCCAGTTGAGCAAGCACATGTATCATTATCAGGAAAAAACCAAGATTCTGTTATCTCGATTGCGTCTGAAACCTTAAAATCAGCCCTTCCTTTGAGGCCTGGGGCCGAAGTGACTATACCTGTGACCTTAAAGGCTTGGCGCCATGTTGTAGCAGATCCTGAGACTGCTGCAGGCAGGAGTGCCTCTGGAAGCACTGCGAGGCAGTCTAAGGATGGAAGTAACCCCATATTGTTAATCCATTATGCAGGGCCTCTGACAAATGCTGGAGATCCTCCAACAGATAAATCTGCTATCCCCCCTGGCAGGCGCCTTCTTGTTCCTTTGCAGATTTGTGTTCTTCAGGGTTTGTCTTTTGTAAAGGCTCGTCTGCTTTCGATGGAGATTCCTGCACAAGTGGGTGTAAACCTTCCAAAACCAGTTGATATTGAGAATAGCCCTACTGAAGCTCTTGGTTCTCCTACTAAGATGGACAGATTGGTGAAGATTGATCCTTTCAGAGGAAGTTGGGGACTACGCTTTCTTGAACTTGAGTTGTCTAATCCCACAGATGTTGTCTTTGAAATTACTGTTTCTGTCCAGCTGGAGAACGCTAGTCATGAGCATATACTTTCTGGTGATCAAGATGCTACTGAATATGGTTACCCTAAAACAAGAATTGATCGGGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAACTACCAGTTCTTGATGATTCGTTTTTTGTGAAGGATAATCTGGCAGATGGGGCTGTTAGTGGCAGAAATTCAAGCTTCTCGGAACGGAATACTAAAGCTGAACTTAATGCTTCTATCAAGAACCTCATATCTAAGATAAAGGTTAGGTGGCAATCAGGTCGAAACAGCTGTGGAGAATTGAATATCAAGGATGCTATACAGGCAGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGATCCATTGACATTTTGCTTCAGGCTTTCTAGAAACGGCCTTGCACTTGAACATTCTGGTTCACACACAGAGCACAATTTTCAAGTTCACCCTTCTGCAGCTAAGGGTTCTGTGCTGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAATAACACGAAGGAGATCGATCAAAATGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1111

Amino Acids

121.17

Weight (kDa)

6.32

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	9 - 184	1.5e-14	Trs120/TRAPPC9, N-terminal domain
TRAPPC9-Trs120	PF08626	203 - 269	4.1e-11	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	331 - 500	4.6e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	548 - 650	5.3e-17	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	891 - 1046	1.1e-11	Trs120/TRAPPC9, third Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AarI	CACCTGC	2 cut(s)	498, 1471
Acc36I	ACCTGC	3 cut(s)	498, 1471, 2180
Acc65I	GGTACC	1 cut(s)	2086
AccB1I	GGYRCC	3 cut(s)	2086, 2337, 2505
AccII	CGCG	2 cut(s)	87, 354
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	4 cut(s)	1498, 1816, 2157, 2971
AcuI	CTGAAG	6 cut(s)	1266, 1794, 2522, 2661, 3098, 3148
AcvI	CACGTG	2 cut(s)	67, 2114
AcyI	GRCGYC	3 cut(s)	584, 2338, 2506
AfaI	GTAC	5 cut(s)	1362, 2088, 2194, 2880, 3135
AfiI	CCNNNNNNNGG	6 cut(s)	187, 226, 1881, 1972, 2502, 2696
AflIII	ACRYGT	2 cut(s)	2113, 2215
AjnI	CCWGG	6 cut(s)	185, 1412, 1612, 1924, 2296, 2497
AloI	GAACNNNNNNTCC	2 cut(s)	1719, 1751
Alw21I	GWGCWC	5 cut(s)	159, 1346, 1492, 1934, 3219
Alw26I	GTCTC	5 cut(s)	312, 1324, 1338, 1677, 2354
Alw44I	GTGCAC	2 cut(s)	1488, 1930
AlwNI	CAGNNNCTG	4 cut(s)	792, 1640, 2037, 2357
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	7 cut(s)	61, 228, 1910, 2294, 2301, 2447, 3181
ApaI	GGGCCC	1 cut(s)	232
ApaLI	GTGCAC	2 cut(s)	1488, 1930
ApoI	RAATTY	4 cut(s)	1498, 1816, 2157, 2971
Asp700I	GAANNNNTTC	1 cut(s)	1734
Asp718I	GGTACC	1 cut(s)	2086
AspLEI	GCGC	6 cut(s)	356, 658, 1608, 2340, 2508, 3265
AspS9I	GGNCC	7 cut(s)	228, 229, 1652, 1708, 1910, 2301, 2447
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	9 cut(s)	683, 687, 912, 1864, 2138, 2165, 2689, 2825, 3224
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	1652, 1708
BaeGI	GKGCMC	4 cut(s)	72, 232, 1492, 1934
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BanI	GGYRCC	3 cut(s)	2086, 2337, 2505
BanII	GRGCYC	1 cut(s)	232
BarI	GAAGNNNNNNTAC	2 cut(s)	2298, 2330
BbrPI	CACGTG	2 cut(s)	67, 2114
BbsI	GAAGAC	3 cut(s)	668, 1254, 1629
Bbv12I	GWGCWC	5 cut(s)	159, 1346, 1492, 1934, 3219
BceAI	ACGGC	2 cut(s)	226, 3196
BcgI	CGANNNNNNTGC	2 cut(s)	3044, 3078
BciT130I	CCWGG	6 cut(s)	187, 1414, 1614, 1926, 2298, 2499
BclI	TGATCA	2 cut(s)	1869, 2815
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	5 cut(s)	312, 1324, 1338, 1677, 2354
BfaI	CTAG	6 cut(s)	731, 741, 938, 1485, 2790, 3174
BfmI	CTRYAG	7 cut(s)	491, 564, 880, 1151, 1349, 2367, 3240
BfoI	RGCGCY	2 cut(s)	2341, 2509
BfuAI	ACCTGC	3 cut(s)	498, 1471, 2180
BlpI	GCTNAGC	1 cut(s)	558
Bme1390I	CCNGG	7 cut(s)	187, 402, 1414, 1614, 1926, 2298, 2499
Bme18I	GGWCC	2 cut(s)	1652, 1708
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	7 cut(s)	228, 229, 1652, 1708, 1910, 2301, 2447
BmiI	GGNNCC	9 cut(s)	6, 229, 230, 231, 571, 2088, 2302, 2339, 2507
BmrFI	CCNGG	7 cut(s)	187, 402, 1414, 1614, 1926, 2298, 2499
BpiI	GAAGAC	3 cut(s)	668, 1254, 1629
BpmI	CTGGAG	5 cut(s)	500, 771, 2484, 2801, 2912
Bpu10I	CCTNAGC	3 cut(s)	274, 987, 3246
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	3 cut(s)	582, 1111, 2747
BpuMI	CCSGG	1 cut(s)	402
Bsa29I	ATCGAT	5 cut(s)	330, 378, 856, 1892, 3315
BsaAI	YACGTR	2 cut(s)	67, 2114
BsaHI	GRCGYC	3 cut(s)	584, 2338, 2506
BsaJI	CCNNGG	9 cut(s)	185, 186, 220, 242, 400, 1413, 1925, 2297, 2497
BsaXI	ACNNNNNCTCC	2 cut(s)	1719, 1749
Bsc4I	CCNNNNNNNGG	6 cut(s)	187, 226, 1881, 1972, 2502, 2696
Bse118I	RCCGGY	1 cut(s)	460
Bse3DI	GCAATG	4 cut(s)	510, 1191, 1206, 2099
BseBI	CCWGG	6 cut(s)	187, 1414, 1614, 1926, 2298, 2499
BseCI	ATCGAT	5 cut(s)	330, 378, 856, 1892, 3315
BseDI	CCNNGG	9 cut(s)	185, 186, 220, 242, 400, 1413, 1925, 2297, 2497
BseGI	GGATG	6 cut(s)	427, 1579, 1981, 2416, 3100, 3136
BseLI	CCNNNNNNNGG	6 cut(s)	187, 226, 1881, 1972, 2502, 2696
BseMI	GCAATG	4 cut(s)	510, 1191, 1206, 2099
BseMII	CTCAG	9 cut(s)	144, 425, 549, 627, 1154, 1349, 1378, 1815, 2349
BseRI	GAGGAG	3 cut(s)	71, 352, 632
BseSI	GKGCMC	4 cut(s)	72, 232, 1492, 1934
BseYI	CCCAGC	1 cut(s)	1466
BsgI	GTGCAG	5 cut(s)	711, 1035, 1413, 1440, 2571
Bsh1236I	CGCG	2 cut(s)	87, 354
Bsh1285I	CGRYCG	2 cut(s)	382, 1892
BshFI	GGCC	7 cut(s)	63, 230, 1912, 2296, 2303, 2449, 3183
BshNI	GGYRCC	3 cut(s)	2086, 2337, 2505
BshVI	ATCGAT	5 cut(s)	330, 378, 856, 1892, 3315
BsiEI	CGRYCG	2 cut(s)	382, 1892
BsiHKAI	GWGCWC	5 cut(s)	159, 1346, 1492, 1934, 3219
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	4 cut(s)	8, 195, 402, 461
BslFI	GGGAC	2 cut(s)	151, 2721
BslI	CCNNNNNNNGG	6 cut(s)	187, 226, 1881, 1972, 2502, 2696
BsmAI	GTCTC	5 cut(s)	312, 1324, 1338, 1677, 2354
BsmBI	CGTCTC	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	151, 2721
BsnI	GGCC	7 cut(s)	63, 230, 1912, 2296, 2303, 2449, 3183
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	7 cut(s)	72, 159, 232, 1346, 1492, 1934, 3219
Bsp1720I	GCTNAGC	1 cut(s)	558
BspANI	GGCC	7 cut(s)	63, 230, 1912, 2296, 2303, 2449, 3183
BspCNI	CTCAG	9 cut(s)	145, 424, 550, 626, 1153, 1348, 1377, 1814, 2350
BspDI	ATCGAT	5 cut(s)	330, 378, 856, 1892, 3315
BspFNI	CGCG	2 cut(s)	87, 354
BspHI	TCATGA	2 cut(s)	2146, 2794
BspLI	GGNNCC	9 cut(s)	6, 229, 230, 231, 571, 2088, 2302, 2339, 2507
BspMAI	CTGCAG	4 cut(s)	495, 568, 2371, 3244
BspMI	ACCTGC	3 cut(s)	498, 1471, 2180
BspT107I	GGYRCC	3 cut(s)	2086, 2337, 2505
BsrDI	GCAATG	4 cut(s)	510, 1191, 1206, 2099
BsrFI	RCCGGY	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	9 cut(s)	185, 186, 220, 242, 400, 1413, 1925, 2297, 2497
BssNI	GRCGYC	3 cut(s)	584, 2338, 2506
Bst2UI	CCWGG	6 cut(s)	187, 1414, 1614, 1926, 2298, 2499
Bst4CI	ACNGT	8 cut(s)	237, 525, 863, 1694, 1840, 1936, 2197, 2767
Bst6I	CTCTTC	1 cut(s)	1612
BstACI	GRCGYC	3 cut(s)	584, 2338, 2506
BstAPI	GCANNNNNTGC	2 cut(s)	1025, 1640
BstBAI	YACGTR	2 cut(s)	67, 2114
BstC8I	GCNNGC	9 cut(s)	349, 462, 564, 654, 984, 2211, 2371, 2504, 3261
BstDSI	CCRYGG	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	2837
BstENI	CCTNNNNNAGG	2 cut(s)	1970, 2694
BstF5I	GGATG	6 cut(s)	427, 1579, 1981, 2416, 3100, 3136
BstFNI	CGCG	2 cut(s)	87, 354
BstH2I	RGCGCY	2 cut(s)	2341, 2509
BstHHI	GCGC	6 cut(s)	356, 658, 1608, 2340, 2508, 3265
BstMAI	GTCTC	5 cut(s)	312, 1324, 1338, 1677, 2354
BstMCI	CGRYCG	2 cut(s)	382, 1892
BstNI	CCWGG	6 cut(s)	187, 1414, 1614, 1926, 2298, 2499
BstNSI	RCATGY	1 cut(s)	2219
BstPI	GGTNACC	1 cut(s)	2837
BstSCI	CCNGG	7 cut(s)	185, 400, 1412, 1612, 1924, 2296, 2497
BstSFI	CTRYAG	7 cut(s)	491, 564, 880, 1151, 1349, 2367, 3240
BstSLI	GKGCMC	4 cut(s)	72, 232, 1492, 1934
BstUI	CGCG	2 cut(s)	87, 354
BstV2I	GAAGAC	3 cut(s)	668, 1254, 1629
BstX2I	RGATCY	4 cut(s)	1399, 2353, 2467, 3145
BstXI	CCANNNNNNTGG	1 cut(s)	1946
BstYI	RGATCY	4 cut(s)	1399, 2353, 2467, 3145
Bsu15I	ATCGAT	5 cut(s)	330, 378, 856, 1892, 3315
BsuRI	GGCC	7 cut(s)	63, 230, 1912, 2296, 2303, 2449, 3183
BsuTUI	ATCGAT	5 cut(s)	330, 378, 856, 1892, 3315
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	6 cut(s)	427, 1579, 1981, 2416, 3100, 3136
BtsI	GCAGTG	4 cut(s)	295, 793, 1939, 2391
BveI	ACCTGC	3 cut(s)	498, 1471, 2180
Cac8I	GCNNGC	9 cut(s)	349, 462, 564, 654, 984, 2211, 2371, 2504, 3261
CaiI	CAGNNNCTG	4 cut(s)	792, 1640, 2037, 2357
CciI	TCATGA	2 cut(s)	2146, 2794
CfoI	GCGC	6 cut(s)	356, 658, 1608, 2340, 2508, 3265
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	7 cut(s)	228, 229, 1652, 1708, 1910, 2301, 2447
ClaI	ATCGAT	5 cut(s)	330, 378, 856, 1892, 3315
CseI	GACGC	2 cut(s)	592, 2250
Csp6I	GTAC	5 cut(s)	1361, 2087, 2193, 2879, 3134
CspCI	CAANNNNNGTGG	4 cut(s)	1116, 1151, 2731, 2766
CviAII	CATG	7 cut(s)	34, 1220, 2147, 2216, 2342, 2795, 3266
CviQI	GTAC	5 cut(s)	1361, 2087, 2193, 2879, 3134
DinI	GGCGCC	2 cut(s)	2339, 2507
DraI	TTTAAA	1 cut(s)	2902
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	1612
EarI	CTCTTC	1 cut(s)	1612
EciI	GGCGGA	5 cut(s)	98, 121, 355, 447, 479
Eco147I	AGGCCT	1 cut(s)	2296
Eco24I	GRGCYC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	854
Eco47I	GGWCC	2 cut(s)	1652, 1708
Eco57I	CTGAAG	6 cut(s)	1266, 1794, 2522, 2661, 3098, 3148
Eco72I	CACGTG	2 cut(s)	67, 2114
Eco88I	CYCGRG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	2837
EcoNI	CCTNNNNNAGG	2 cut(s)	1970, 2694
EcoO109I	RGGNCCY	4 cut(s)	228, 229, 1708, 2447
EcoO65I	GGTNACC	1 cut(s)	2837
EcoRII	CCWGG	6 cut(s)	185, 1412, 1612, 1924, 2296, 2497
EcoRV	GATATC	1 cut(s)	854
EcoT38I	GRGCYC	1 cut(s)	232
EgeI	GGCGCC	2 cut(s)	2339, 2507
EheI	GGCGCC	2 cut(s)	2339, 2507
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	7 cut(s)	37, 1223, 2150, 2219, 2345, 2798, 3269
FalI	AAGNNNNNCTT	8 cut(s)	155, 187, 1219, 1251, 1239, 1271, 2991, 3023
FaqI	GGGAC	2 cut(s)	151, 2721
FatI	CATG	7 cut(s)	33, 1219, 2146, 2215, 2341, 2794, 3265
FauI	CCCGC	1 cut(s)	218
FbaI	TGATCA	2 cut(s)	1869, 2815
FokI	GGATG	6 cut(s)	434, 1566, 1988, 2423, 3107, 3143
FriOI	GRGCYC	1 cut(s)	232
FspBI	CTAG	6 cut(s)	731, 741, 938, 1485, 2790, 3174
GlaI	GCGC	6 cut(s)	355, 657, 1607, 2339, 2507, 3264
GsaI	CCCAGC	1 cut(s)	1470
GsuI	CTGGAG	5 cut(s)	500, 771, 2484, 2801, 2912
HaeII	RGCGCY	2 cut(s)	2341, 2509
HaeIII	GGCC	7 cut(s)	63, 230, 1912, 2296, 2303, 2449, 3183
HapII	CCGG	4 cut(s)	8, 195, 402, 461
HgaI	GACGC	2 cut(s)	592, 2250
HhaI	GCGC	6 cut(s)	356, 658, 1608, 2340, 2508, 3265
Hin1I	GRCGYC	3 cut(s)	584, 2338, 2506
Hin1II	CATG	7 cut(s)	37, 1223, 2150, 2219, 2345, 2798, 3269
Hin6I	GCGC	6 cut(s)	354, 656, 1606, 2338, 2506, 3263
HinP1I	GCGC	6 cut(s)	354, 656, 1606, 2338, 2506, 3263
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HindIII	AAGCTT	1 cut(s)	2977
HpaII	CCGG	4 cut(s)	8, 195, 402, 461
HphI	GGTGA	9 cut(s)	683, 687, 912, 1864, 2138, 2165, 2689, 2825, 3224
Hpy166II	GTNNAC	7 cut(s)	747, 1490, 1932, 1939, 2602, 3206, 3232
Hpy8I	GTNNAC	7 cut(s)	747, 1490, 1932, 1939, 2602, 3206, 3232
Hpy99I	CGWCG	1 cut(s)	241
HpyCH4III	ACNGT	8 cut(s)	237, 525, 863, 1694, 1840, 1936, 2197, 2767
HpyCH4IV	ACGT	3 cut(s)	12, 66, 2113
HpySE526I	ACGT	3 cut(s)	12, 66, 2113
Hsp92I	GRCGYC	3 cut(s)	584, 2338, 2506
Hsp92II	CATG	7 cut(s)	37, 1223, 2150, 2219, 2345, 2798, 3269
HspAI	GCGC	6 cut(s)	354, 656, 1606, 2338, 2506, 3263
KasI	GGCGCC	2 cut(s)	2337, 2505
KpnI	GGTACC	1 cut(s)	2090
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Ksp22I	TGATCA	2 cut(s)	1869, 2815
MaeI	CTAG	6 cut(s)	731, 741, 938, 1485, 2790, 3174
MaeII	ACGT	3 cut(s)	12, 66, 2113
MaeIII	GTNAC	6 cut(s)	1834, 1915, 2308, 2320, 2417, 2837
MboII	GAAGA	9 cut(s)	646, 673, 1259, 1629, 1634, 1838, 2135, 2528, 2692
MflI	RGATCY	4 cut(s)	1399, 2353, 2467, 3145
MhlI	GDGCHC	7 cut(s)	72, 159, 232, 1346, 1492, 1934, 3219
Mly113I	GGCGCC	2 cut(s)	2338, 2506
MlyI	GAGTC	6 cut(s)	314, 335, 469, 1244, 1340, 3268
MmeI	TCCRAC	3 cut(s)	396, 1705, 2498
MreI	CGCCGGCG	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	1734
MseI	TTAA	8 cut(s)	926, 1454, 1971, 2273, 2327, 2432, 2901, 3009
MslI	CAYNNNNRTG	2 cut(s)	2081, 2151
MspA1I	CMGCKG	4 cut(s)	1385, 1424, 2779, 3072
MspI	CCGG	4 cut(s)	8, 195, 402, 461
MspR9I	CCNGG	7 cut(s)	187, 402, 1414, 1614, 1926, 2298, 2499
MvaI	CCWGG	6 cut(s)	187, 1414, 1614, 1926, 2298, 2499
MvnI	CGCG	2 cut(s)	87, 354
NaeI	GCCGGC	1 cut(s)	462
NarI	GGCGCC	2 cut(s)	2338, 2506
NciI	CCSGG	1 cut(s)	402
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	7 cut(s)	37, 1223, 2150, 2219, 2345, 2798, 3269
NlaIV	GGNNCC	9 cut(s)	6, 229, 230, 231, 571, 2088, 2302, 2339, 2507
NmeAIII	GCCGAG	2 cut(s)	201, 323
NmuCI	GTSAC	3 cut(s)	1915, 2308, 2320
NspI	RCATGY	1 cut(s)	2219
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	2 cut(s)	2146, 2794
PaqCI	CACCTGC	2 cut(s)	498, 1471
PasI	CCCWGGG	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	2296
PciI	ACATGT	1 cut(s)	2215
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 72, 336
PdiI	GCCGGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	1734
PflFI	GACNNNGTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	1612
Ple19I	CGATCG	2 cut(s)	382, 1892
PleI	GAGTC	6 cut(s)	314, 335, 469, 1244, 1339, 3268
PluTI	GGCGCC	2 cut(s)	2341, 2509
PmaCI	CACGTG	2 cut(s)	67, 2114
PmlI	CACGTG	2 cut(s)	67, 2114
PpsI	GAGTC	6 cut(s)	314, 335, 469, 1244, 1339, 3268
Ppu21I	YACGTR	2 cut(s)	67, 2114
PpuMI	RGGWCCY	1 cut(s)	1708
PscI	ACATGT	1 cut(s)	2215
PsiI	TTATAA	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	1708
Psp6I	CCWGG	6 cut(s)	185, 1412, 1612, 1924, 2296, 2497
PspCI	CACGTG	2 cut(s)	67, 2114
PspEI	GGTNACC	1 cut(s)	2837
PspFI	CCCAGC	1 cut(s)	1466
PspGI	CCWGG	6 cut(s)	185, 1412, 1612, 1924, 2296, 2497
PspN4I	GGNNCC	9 cut(s)	6, 229, 230, 231, 571, 2088, 2302, 2339, 2507
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	7 cut(s)	228, 229, 1652, 1708, 1910, 2301, 2447
PspPPI	RGGWCCY	1 cut(s)	1708
PstI	CTGCAG	4 cut(s)	495, 568, 2371, 3244
PstNI	CAGNNNCTG	4 cut(s)	792, 1640, 2037, 2357
PsuI	RGATCY	4 cut(s)	1399, 2353, 2467, 3145
PsyI	GACNNNGTC	1 cut(s)	323
PvuI	CGATCG	2 cut(s)	382, 1892
PvuII	CAGCTG	3 cut(s)	1424, 2779, 3072
RsaI	GTAC	5 cut(s)	1362, 2088, 2194, 2880, 3135
RsaNI	GTAC	5 cut(s)	1361, 2087, 2193, 2879, 3134
RseI	CAYNNNNRTG	2 cut(s)	2081, 2151
SaqAI	TTAA	8 cut(s)	926, 1454, 1971, 2273, 2327, 2432, 2901, 3009
Sau96I	GGNCC	7 cut(s)	228, 229, 1652, 1708, 1910, 2301, 2447
SbfI	CCTGCAGG	1 cut(s)	568
SchI	GAGTC	6 cut(s)	314, 335, 469, 1244, 1340, 3268
ScrFI	CCNGG	7 cut(s)	187, 402, 1414, 1614, 1926, 2298, 2499
SdaI	CCTGCAGG	1 cut(s)	568
SduI	GDGCHC	7 cut(s)	72, 159, 232, 1346, 1492, 1934, 3219
SfcI	CTRYAG	7 cut(s)	491, 564, 880, 1151, 1349, 2367, 3240
SfoI	GGCGCC	2 cut(s)	2339, 2507
Sfr274I	CTCGAG	1 cut(s)	371
SgrAI	CRCCGGYG	1 cut(s)	460
SinI	GGWCC	2 cut(s)	1652, 1708
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	2081, 2151
SmlI	CTYRAG	4 cut(s)	371, 597, 1126, 2726
SmoI	CTYRAG	4 cut(s)	371, 597, 1126, 2726
Sse8387I	CCTGCAGG	1 cut(s)	568
SseBI	AGGCCT	1 cut(s)	2296
SspDI	GGCGCC	2 cut(s)	2337, 2505
SspMI	CTAG	6 cut(s)	731, 741, 938, 1485, 2790, 3174
StuI	AGGCCT	1 cut(s)	2296
StyD4I	CCNGG	7 cut(s)	185, 400, 1412, 1612, 1924, 2296, 2497
TaaI	ACNGT	8 cut(s)	237, 525, 863, 1694, 1840, 1936, 2197, 2767
TaiI	ACGT	3 cut(s)	15, 69, 2116
TatI	WGTACW	2 cut(s)	1360, 3133
TauI	GCSGC	2 cut(s)	354, 518
Tru1I	TTAA	8 cut(s)	926, 1454, 1971, 2273, 2327, 2432, 2901, 3009
Tru9I	TTAA	8 cut(s)	926, 1454, 1971, 2273, 2327, 2432, 2901, 3009
TseFI	GTSAC	3 cut(s)	1915, 2308, 2320
Tsp45I	GTSAC	3 cut(s)	1915, 2308, 2320
TspDTI	ATGAA	5 cut(s)	858, 1543, 1848, 2135, 3282
TspGWI	ACGGA	5 cut(s)	29, 313, 1379, 1644, 3004
Tth111I	GACNNNGTC	1 cut(s)	323
VneI	GTGCAC	2 cut(s)	1488, 1930
VpaK11BI	GGWCC	2 cut(s)	1652, 1708
XagI	CCTNNNNNAGG	2 cut(s)	1970, 2694
XapI	RAATTY	4 cut(s)	1498, 1816, 2157, 2971
XbaI	TCTAGA	1 cut(s)	3173
XceI	RCATGY	1 cut(s)	2219
XcmI	CCANNNNNNNNNTGG	2 cut(s)	40, 240
XhoI	CTCGAG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	1734
XspI	CTAG	6 cut(s)	731, 741, 938, 1485, 2790, 3174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.