Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

61746031 .. 61751816

Gene Structure 5786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG389000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3594 bp

ATGGAGCCGGACGTGAGCATCGAAACCAGCTCCATGATCCGCGTGGCGGTCCTCCCCATCGGCCACGTGCCCCCGGTCCTCCTGCGCGACTACCACTCCATGCTGCTCCGCCACCAGTCGATCCCTCTCTCCGCCGTCAGCTCCTTCTACACCGAGCACCAGAAGTCGCCCTTCGCTCACCAGCCCTGGGACTCCGGCAGCCTCCGCTTCAAGTTCGTCCTCGGCGGCGCCCCTCCCAGCCCCTGGGAGGACTTCCAGTCCAACCGCAAAACCCTTGCCGTCATCGGAATCTGCCACTGTCCTTCCTCCCCGGATCTCGGCTCCGTCATGGATCAATTCGATTCCGTCTGTAGAGCCTACCCTGCCGCACTCGTCGAACGCTGCTTTGCCTTCTGCCCCGCCGATTCTCAGTTGGAGGATGGGAGTAAGAAAGGGTGGAACCTGATGCTGTTCCCACCGGCGGATCGGGCCACACAGGAGTTTCACTTGCAAACGATGATGCAAGACATAGCGGCCTCATTGCTAATGGAGTTTGAGAAATGGGTGCTTAAGGCTGAGCCTGCGGGGACTATTGTCAAGACGCCTTTGGATTCTCAAGCTACTCTCAACTCAGAGGAGGTTATAAAGGCGAAGAAACGGAGGCTTGGGCGTGCACAGAAGACTATGGGTGATTATTGCTTGTTGGCAGGATCACCGGTTGATGCCAATCTTCATTACTCTACTGCACTGGAACTTGCTAGGTTGACCGGAGATTTTTTTTGGTATGCTGGTGCATTGGAGGGAAGTGTTTGTGCATTACTGATTGATCGAATGGGCCAAAAGGATACAGCCGTGGAAGAGGAAGTTAGATATCGGTATAGTAGTGTCATTTTGCACTACAGGAAGTCGTTCATACAAGAGAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTGGCAAGGTTTCTTTGCAGACGTGAGCTGGCTAGGGAGGTAGTGGAGCTACTAACAAATGCAGCAGATGGTGCGAAATCTCTGATTGATGCCAGTGATAGACTTGTGCTTTATGTTGAAATAGCTCGTTTATATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTCTTGCAATGACCACAAAAGCATATCGTGTTCAGAGTAAAGCTTCAACCTTGGAAGATTCTGTTCCCAAAAAGGAAACTGGATCAAGTGTTTCTGAGGGTGGGAAAATGCTCCATCAGTCGGTAGTCTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCGTGGGGTGCAGCTGCAAGACTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAAATGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCCTCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTGTATTCTTTTCCTCTCCATCCCTCACAAATGGACATTGTAAAGCGCAATCCTGCTAGAGAAGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTATACGCCATTCAGCAAGGGAGAGCCAAGCAATAACAGCAAACAGGAGCTGATTTGGATTGTTGGAGAACCAGTTCAGATTTTGGTGGAACTGGCAAACCCATGCGGCTTTGATTTGAGGGTCGATAGTATATATCTCTCTGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCACTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATCCCAACTTCAGTAGGGCCAGTGACAATTCCTGGGTGCACCGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTTTCTGACCCTTTCAGATGCTGTGGGTCTGCAAGGTTGAAAAATATATCTGTTCCAAGTATTTCTGTAGTACCGCCACTGCCATTACTGGTTTCACGTGTTGTTGGTGGTGATGGTGCAATCATTCTACACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACAGTTCCAGTTGAGCAAGTCCATGTATCGCTATCTGGAAAACACCAAGATTCTGTTCTCTTTATTGCATCTGAAACCTTAAAATCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATTCCTGTGACTTTAAAAGCTTGGCGAATTGTCTTAGCGGATGCAGATACTGCTGCTGGCAGGAGTGCCTCTAAGCACTCTAAGGATGGAAATAGCCCCACATTGTTGATCCATTATGCAGGGACTCTGCCAAATACTGGAGATCCTTCAACAGAAAAGTCTGTTGTCCCACCTGGCAGACGCCTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCGATGGAGATTCCTGCACAAGTAGGTGAAAACCTTCCGAAGCCAGTTCATATTGACAATAGTCTTACTGAAGGAGCTGTGGGCACTCCAAATAAGATGGACAGATTGGTGAAAATTGATCCTTTTAGAGGAAGCTGGGGACTACGCTTCCTTGAACTTGAGTTGTCTAATCCAACTGATGTTGTCTTTGAAATTAGTGTTTCAGTCCAACTGGAGAACACCGATCATGAGCATAGCCTCTCCGTTGATCGAGATGCTACTGAGTATGGTTACCCTAAAACAAGAATTGATCGAGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAATTGCCTGTTCTTGATGATTCTTTTTTTGTAAAAGATAATCAAGCTGATGGGAGTGGCAGAAGTTATAGCTTTTCAGAAAGGAATACGAAAGCTGAACTTAATGCCTCTATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGCTCTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCATTAACATTTTGCTTCAGGCTTTCCAGAAATGGCCCTGGACCTGAAAATATTGATTCCCGTGAAGAATCCAATGATCAAGTTGACTCTTCTGCTTCTAAAGGTTCTGTGATGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAATTAATCAAGATGAGTCTTAACGTTGTGTGCAGGGATGTTGCGGGAGAGGATTGTGTAGAGTGTGCAAATGCAACTGTCTTATGTTCTGGTGTTTTGGGTGGGATAACCATGGAGGTTCCACCGCTTGAAGAAATCAAGCATTCTTTCTCTTTGTATTTTCTCGTCCCCGGGGAGTACACACTAATAGCGGCTGCCATGATCGAAGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACCAAATCCTCTGATGAGCCGATCTTCTGTCGTGGCCCTCCATATCATGTCCGGGTTGTTGGCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1197

Amino Acids

130.98

Weight (kDa)

6.08

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	9 - 184	2.9e-17	Trs120/TRAPPC9, N-terminal domain
TRAPPC9-Trs120	PF08626	203 - 268	1.1e-10	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	330 - 499	7.3e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	547 - 646	4.2e-20	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	884 - 1037	3.2e-12	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	1066 - 1193	5.3e-13	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	1 cut(s)	1468
Acc36I	ACCTGC	2 cut(s)	1120, 1468
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	243, 2438
AccII	CGCG	2 cut(s)	42, 87
AclI	AACGTT	1 cut(s)	3306
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	1813, 2145
AcuI	CTGAAG	5 cut(s)	1791, 1875, 2637, 3071, 3121
AcvI	CACGTG	2 cut(s)	67, 2102
AcyI	GRCGYC	3 cut(s)	228, 581, 2482
AfaI	GTAC	7 cut(s)	1359, 2076, 2182, 2859, 3075, 3108, 3461
AflII	CTTAAG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	2101
AgeI	ACCGGT	1 cut(s)	694
AhdI	GACNNNNNGTC	1 cut(s)	256
AjiI	CACGTC	2 cut(s)	13, 974
AjnI	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
AjuI	GAANNNNNNNTTGG	2 cut(s)	2220, 2252
AleI	CACNNNNGTG	1 cut(s)	2139
AloI	GAACNNNNNNTCC	2 cut(s)	1716, 1748
Alw21I	GWGCWC	5 cut(s)	159, 655, 1343, 1489, 1922
Alw26I	GTCTC	2 cut(s)	1321, 1335
Alw44I	GTGCAC	3 cut(s)	651, 1485, 1918
AlwNI	CAGNNNCTG	5 cut(s)	243, 1708, 1835, 2025, 2351
Ama87I	CYCGRG	1 cut(s)	3452
ApaLI	GTGCAC	3 cut(s)	651, 1485, 1918
ApoI	RAATTY	2 cut(s)	1813, 2145
AseI	ATTAAT	1 cut(s)	3287
AsiGI	ACCGGT	1 cut(s)	694
Asp700I	GAANNNNTTC	3 cut(s)	887, 1731, 2580
AspLEI	GCGC	4 cut(s)	87, 230, 1605, 3238
AspS9I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
AsuC2I	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
AsuHPI	GGTGA	8 cut(s)	170, 680, 684, 909, 2126, 2153, 2585, 2668
AvaI	CYCGRG	1 cut(s)	3452
AvaII	GGWCC	3 cut(s)	49, 76, 3161
AxyI	CCTNAGG	2 cut(s)	1516, 3506
BaeGI	GKGCMC	5 cut(s)	72, 655, 1489, 1922, 2633
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BamHI	GGATCC	1 cut(s)	1881
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	3514
BauI	CACGAG	1 cut(s)	3513
BbrPI	CACGTG	2 cut(s)	67, 2102
BbsI	GAAGAC	2 cut(s)	665, 1626
Bbv12I	GWGCWC	5 cut(s)	159, 655, 1343, 1489, 1922
BceAI	ACGGC	3 cut(s)	119, 263, 815
BciT130I	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	1 cut(s)	3196
BcnI	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
BcoDI	GTCTC	2 cut(s)	1321, 1335
BfaI	CTAG	5 cut(s)	738, 984, 1482, 1614, 3009
BfmI	CTRYAG	3 cut(s)	349, 877, 2070
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	2 cut(s)	1120, 1468
BfuI	GTATCC	1 cut(s)	817
BlpI	GCTNAGC	1 cut(s)	555
Bme18I	GGWCC	3 cut(s)	49, 76, 3161
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	3452
BmgBI	CACGTC	2 cut(s)	13, 974
BmgT120I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
BmiI	GGNNCC	6 cut(s)	6, 229, 322, 440, 1883, 3402
BmrI	ACTGGG	1 cut(s)	1656
BmuI	ACTGGG	1 cut(s)	1656
BoxI	GACNNNNGTC	2 cut(s)	572, 2607
BpiI	GAAGAC	2 cut(s)	665, 1626
BpmI	CTGGAG	6 cut(s)	1653, 2307, 2460, 2780, 2891, 3069
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	5 cut(s)	579, 956, 1108, 2299, 2726
BpuMI	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
BsaAI	YACGTR	2 cut(s)	67, 2102
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	228, 581, 2482
BsaWI	WCCGGW	2 cut(s)	694, 746
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 1716, 1746, 2280, 2310
Bse118I	RCCGGY	2 cut(s)	457, 694
Bse21I	CCTNAGG	2 cut(s)	1516, 3506
Bse3DI	GCAATG	3 cut(s)	518, 1188, 1203
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
BseGI	GGATG	8 cut(s)	424, 1576, 1969, 2347, 2392, 3073, 3109, 3325
BseJI	GATNNNNATC	1 cut(s)	705
BseMI	GCAATG	3 cut(s)	518, 1188, 1203
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	5 cut(s)	72, 655, 1489, 1922, 2633
BseYI	CCCAGC	3 cut(s)	236, 1463, 2682
BsgI	GTGCAG	4 cut(s)	708, 1437, 2547, 3334
Bsh1236I	CGCG	2 cut(s)	42, 87
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	694
BsiHKAI	GWGCWC	5 cut(s)	159, 655, 1343, 1489, 1922
BsiHKCI	CYCGRG	1 cut(s)	3452
BsiSI	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
BslFI	GGGAC	6 cut(s)	203, 580, 2437, 2453, 2700, 3434
BsmAI	GTCTC	2 cut(s)	1321, 1335
BsmFI	GGGAC	6 cut(s)	203, 580, 2437, 2453, 2700, 3434
BsmI	GAATGC	2 cut(s)	907, 3424
BsoBI	CYCGRG	1 cut(s)	3452
Bsp1286I	GDGCHC	8 cut(s)	72, 159, 655, 1343, 1489, 1922, 2633, 3514
Bsp1407I	TGTACA	1 cut(s)	3073
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	3393
BspFNI	CGCG	2 cut(s)	42, 87
BspHI	TCATGA	1 cut(s)	2773
BspLI	GGNNCC	6 cut(s)	6, 229, 322, 440, 1883, 3402
BspMI	ACCTGC	2 cut(s)	1120, 1468
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	518, 1188, 1203
BsrFI	RCCGGY	2 cut(s)	457, 694
BsrGI	TGTACA	1 cut(s)	3073
BssAI	RCCGGY	2 cut(s)	457, 694
BssNI	GRCGYC	3 cut(s)	228, 581, 2482
BssSI	CACGAG	1 cut(s)	3513
BssT1I	CCWWGG	3 cut(s)	1239, 1981, 3393
Bst2BI	CACGAG	1 cut(s)	3513
Bst2UI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
Bst4CI	ACNGT	5 cut(s)	299, 1837, 1924, 2185, 3361
Bst6I	CTCTTC	2 cut(s)	831, 3214
BstACI	GRCGYC	3 cut(s)	228, 581, 2482
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	2 cut(s)	1022, 2351
BstAUI	TGTACA	1 cut(s)	3073
BstBAI	YACGTR	2 cut(s)	67, 2102
BstC8I	GCNNGC	4 cut(s)	561, 651, 981, 2359
BstDSI	CCRYGG	2 cut(s)	831, 3393
BstEII	GGTNACC	1 cut(s)	2816
BstENI	CCTNNNNNAGG	2 cut(s)	1958, 2673
BstF5I	GGATG	8 cut(s)	424, 1576, 1969, 2347, 2392, 3073, 3109, 3325
BstFNI	CGCG	2 cut(s)	42, 87
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	4 cut(s)	87, 230, 1605, 3238
BstMAI	GTCTC	2 cut(s)	1321, 1335
BstNI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
BstPAI	GACNNNNGTC	2 cut(s)	572, 2607
BstPI	GGTNACC	1 cut(s)	2816
BstSFI	CTRYAG	3 cut(s)	349, 877, 2070
BstSLI	GKGCMC	5 cut(s)	72, 655, 1489, 1922, 2633
BstUI	CGCG	2 cut(s)	42, 87
BstV2I	GAAGAC	2 cut(s)	665, 1626
BstX2I	RGATCY	4 cut(s)	313, 1396, 1881, 2443
BstXI	CCANNNNNNTGG	1 cut(s)	1934
BstYI	RGATCY	4 cut(s)	313, 1396, 1881, 2443
Bsu36I	CCTNAGG	2 cut(s)	1516, 3506
BsuI	GTATCC	1 cut(s)	817
BtgI	CCRYGG	2 cut(s)	831, 3393
BtrI	CACGTC	2 cut(s)	13, 974
BtsCI	GGATG	8 cut(s)	424, 1576, 1969, 2347, 2392, 3073, 3109, 3325
BtsI	GCAGTG	3 cut(s)	1927, 2081, 3585
BveI	ACCTGC	2 cut(s)	1120, 1468
Cac8I	GCNNGC	4 cut(s)	561, 651, 981, 2359
CaiI	CAGNNNCTG	5 cut(s)	243, 1708, 1835, 2025, 2351
CciI	TCATGA	1 cut(s)	2773
CfoI	GCGC	4 cut(s)	87, 230, 1605, 3238
Cfr10I	RCCGGY	2 cut(s)	457, 694
Cfr13I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
Cfr9I	CCCGGG	1 cut(s)	3452
CseI	GACGC	2 cut(s)	589, 2490
Csp6I	GTAC	7 cut(s)	1358, 2075, 2181, 2858, 3074, 3107, 3460
CspAI	ACCGGT	1 cut(s)	694
CviQI	GTAC	7 cut(s)	1358, 2075, 2181, 2858, 3074, 3107, 3460
DinI	GGCGCC	1 cut(s)	229
DraI	TTTAAA	2 cut(s)	2316, 2881
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	831, 3214
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	2 cut(s)	831, 3214
EciI	GGCGGA	3 cut(s)	98, 121, 476
Eco130I	CCWWGG	3 cut(s)	1239, 1981, 3393
Eco147I	AGGCCT	1 cut(s)	2284
Eco24I	GRGCYC	1 cut(s)	3514
Eco32I	GATATC	2 cut(s)	851, 3502
Eco47I	GGWCC	3 cut(s)	49, 76, 3161
Eco57I	CTGAAG	5 cut(s)	1791, 1875, 2637, 3071, 3121
Eco72I	CACGTG	2 cut(s)	67, 2102
Eco81I	CCTNAGG	2 cut(s)	1516, 3506
Eco88I	CYCGRG	1 cut(s)	3452
Eco91I	GGTNACC	1 cut(s)	2816
EcoNI	CCTNNNNNAGG	2 cut(s)	1958, 2673
EcoO65I	GGTNACC	1 cut(s)	2816
EcoRII	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
EcoRV	GATATC	2 cut(s)	851, 3502
EcoT14I	CCWWGG	3 cut(s)	1239, 1981, 3393
EcoT38I	GRGCYC	1 cut(s)	3514
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	3 cut(s)	1239, 1981, 3393
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 2964, 2996
FaqI	GGGAC	6 cut(s)	203, 580, 2437, 2453, 2700, 3434
FauI	CCCGC	3 cut(s)	406, 556, 3319
FbaI	TGATCA	1 cut(s)	3196
FokI	GGATG	8 cut(s)	431, 1563, 1976, 2354, 2399, 3080, 3116, 3332
FriOI	GRGCYC	1 cut(s)	3514
FspBI	CTAG	5 cut(s)	738, 984, 1482, 1614, 3009
GlaI	GCGC	4 cut(s)	86, 229, 1604, 3237
GsaI	CCCAGC	3 cut(s)	240, 1467, 2686
GsuI	CTGGAG	6 cut(s)	1653, 2307, 2460, 2780, 2891, 3069
HaeII	RGCGCY	1 cut(s)	231
HapII	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
HgaI	GACGC	2 cut(s)	589, 2490
HhaI	GCGC	4 cut(s)	87, 230, 1605, 3238
Hin1I	GRCGYC	3 cut(s)	228, 581, 2482
Hin6I	GCGC	4 cut(s)	85, 228, 1603, 3236
HinP1I	GCGC	4 cut(s)	85, 228, 1603, 3236
HincII	GTYRAC	3 cut(s)	744, 1969, 3205
HindII	GTYRAC	3 cut(s)	744, 1969, 3205
HindIII	AAGCTT	2 cut(s)	1230, 2319
HpaII	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
HphI	GGTGA	8 cut(s)	170, 680, 684, 909, 2126, 2153, 2585, 2668
Hpy166II	GTNNAC	8 cut(s)	653, 744, 1487, 1920, 1927, 1969, 3205, 3462
Hpy8I	GTNNAC	8 cut(s)	653, 744, 1487, 1920, 1927, 1969, 3205, 3462
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	5 cut(s)	299, 1837, 1924, 2185, 3361
HpyCH4IV	ACGT	5 cut(s)	12, 66, 973, 2101, 3306
HpySE526I	ACGT	5 cut(s)	12, 66, 973, 2101, 3306
Hsp92I	GRCGYC	3 cut(s)	228, 581, 2482
HspAI	GCGC	4 cut(s)	85, 228, 1603, 3236
KasI	GGCGCC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	3196
MaeI	CTAG	5 cut(s)	738, 984, 1482, 1614, 3009
MaeII	ACGT	5 cut(s)	12, 66, 973, 2101, 3306
MaeIII	GTNAC	7 cut(s)	1831, 1867, 1903, 2296, 2308, 2816, 3269
MflI	RGATCY	4 cut(s)	313, 1396, 1881, 2443
MhlI	GDGCHC	8 cut(s)	72, 159, 655, 1343, 1489, 1922, 2633, 3514
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	6 cut(s)	185, 1337, 2419, 3200, 3241, 3307
MmeI	TCCRAC	5 cut(s)	285, 393, 1702, 2744, 2779
MroXI	GAANNNNTTC	3 cut(s)	887, 1731, 2580
MslI	CAYNNNNRTG	1 cut(s)	2139
MspA1I	CMGCKG	2 cut(s)	1421, 1502
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3453, 3574
Mva1269I	GAATGC	2 cut(s)	907, 3424
MvaI	CCWGG	7 cut(s)	187, 244, 1914, 2286, 2475, 2486, 3159
MvnI	CGCG	2 cut(s)	42, 87
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	5 cut(s)	74, 311, 3453, 3454, 3575
NcoI	CCATGG	1 cut(s)	3393
NlaIV	GGNNCC	6 cut(s)	6, 229, 322, 440, 1883, 3402
NmeAIII	GCCGAG	2 cut(s)	201, 297
NmuCI	GTSAC	5 cut(s)	1831, 1867, 1903, 2296, 2308
OliI	CACNNNNGTG	1 cut(s)	2139
PagI	TCATGA	1 cut(s)	2773
PaqCI	CACCTGC	1 cut(s)	1468
PasI	CCCWGGG	2 cut(s)	186, 243
PceI	AGGCCT	1 cut(s)	2284
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	2 cut(s)	907, 3424
PdmI	GAANNNNTTC	3 cut(s)	887, 1731, 2580
PflMI	CCANNNNNTGG	2 cut(s)	243, 2438
PinAI	ACCGGT	1 cut(s)	694
PleI	GAGTC	6 cut(s)	185, 1336, 2419, 3200, 3241, 3306
PluTI	GGCGCC	1 cut(s)	231
PmaCI	CACGTG	2 cut(s)	67, 2102
PmlI	CACGTG	2 cut(s)	67, 2102
PpsI	GAGTC	6 cut(s)	185, 1336, 2419, 3200, 3241, 3306
Ppu21I	YACGTR	2 cut(s)	67, 2102
PshAI	GACNNNNGTC	2 cut(s)	572, 2607
PshBI	ATTAAT	1 cut(s)	3287
PsiI	TTATAA	1 cut(s)	623
Psp1406I	AACGTT	1 cut(s)	3306
Psp6I	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
PspCI	CACGTG	2 cut(s)	67, 2102
PspEI	GGTNACC	1 cut(s)	2816
PspFI	CCCAGC	3 cut(s)	236, 1463, 2682
PspGI	CCWGG	7 cut(s)	185, 242, 1912, 2284, 2473, 2484, 3157
PspN4I	GGNNCC	6 cut(s)	6, 229, 322, 440, 1883, 3402
PspPI	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
PstNI	CAGNNNCTG	5 cut(s)	243, 1708, 1835, 2025, 2351
PsuI	RGATCY	4 cut(s)	313, 1396, 1881, 2443
PvuII	CAGCTG	1 cut(s)	1421
RsaI	GTAC	7 cut(s)	1359, 2076, 2182, 2859, 3075, 3108, 3461
RsaNI	GTAC	7 cut(s)	1358, 2075, 2181, 2858, 3074, 3107, 3460
RseI	CAYNNNNRTG	1 cut(s)	2139
Sau96I	GGNCC	9 cut(s)	49, 76, 468, 814, 1649, 1898, 3155, 3161, 3557
SchI	GAGTC	6 cut(s)	185, 1337, 2419, 3200, 3241, 3307
SduI	GDGCHC	8 cut(s)	72, 159, 655, 1343, 1489, 1922, 2633, 3514
SfcI	CTRYAG	3 cut(s)	349, 877, 2070
SfoI	GGCGCC	1 cut(s)	229
SgrAI	CRCCGGYG	1 cut(s)	457
SinI	GGWCC	3 cut(s)	49, 76, 3161
SmaI	CCCGGG	1 cut(s)	3454
SmiMI	CAYNNNNRTG	1 cut(s)	2139
SmlI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2278, 2705
SmoI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2278, 2705
SseBI	AGGCCT	1 cut(s)	2284
SspDI	GGCGCC	1 cut(s)	227
SspI	AATATT	1 cut(s)	3172
SspMI	CTAG	5 cut(s)	738, 984, 1482, 1614, 3009
StuI	AGGCCT	1 cut(s)	2284
StyI	CCWWGG	3 cut(s)	1239, 1981, 3393
TaaI	ACNGT	5 cut(s)	299, 1837, 1924, 2185, 3361
TaiI	ACGT	5 cut(s)	15, 69, 976, 2104, 3309
TatI	WGTACW	4 cut(s)	1357, 3073, 3106, 3459
TauI	GCSGC	5 cut(s)	228, 368, 515, 1767, 3476
TseFI	GTSAC	5 cut(s)	1831, 1867, 1903, 2296, 2308
Tsp45I	GTSAC	5 cut(s)	1831, 1867, 1903, 2296, 2308
TspDTI	ATGAA	6 cut(s)	701, 880, 1540, 1845, 2585, 3255
TspGWI	ACGGA	4 cut(s)	313, 334, 652, 2779
TspMI	CCCGGG	1 cut(s)	3452
Van91I	CCANNNNNTGG	2 cut(s)	243, 2438
Vha464I	CTTAAG	1 cut(s)	548
VneI	GTGCAC	3 cut(s)	651, 1485, 1918
VpaK11BI	GGWCC	3 cut(s)	49, 76, 3161
VspI	ATTAAT	1 cut(s)	3287
XagI	CCTNNNNNAGG	2 cut(s)	1958, 2673
XapI	RAATTY	2 cut(s)	1813, 2145
XbaI	TCTAGA	1 cut(s)	3008
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	3452
XmnI	GAANNNNTTC	3 cut(s)	887, 1731, 2580
XspI	CTAG	5 cut(s)	738, 984, 1482, 1614, 3009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.