Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

41686675 .. 41688794

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0269800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAAGCCATGGCGGTAAAGCTTATGCATGCGGTTCAATACAATAGTTATGGTGGAGGACCTTCTGGTTTAAAGCATGTTGAGATTCCGATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAAGTGGAAGCAGCTAGTATAAATCCAATTGATTGGAAACTGCAGAAAGGCGTGGGGCGGCCTTTTTACCCACGCAATTTGCCTCATACACCTGCTTGTGATGTGGCCGGAGAGGTTGTCGAGGTTGGACAAGGAGTTCAGAATTTCAAAGTGGGCGACGAAGTTGTCGCAGCTCTAACACTTGCTACTGGAGGTGCATTTGCTGAGTATGCAACTGCTAAAGAGTGTTTCACGGCTACTAGGCCGCCTGAGGTTTCAGCAGCCGAAGCTGCCGGGTTACCTGTTGCTGGTCTCACAGCTCACCAGTGTCTCACTGAAGCTGCAGGAGTCAAGCTGGATGGCACAGGCCCTCAGAAGAACATATTGATTACCGCTGCCTCTGGAGGTGTGGGGCACTATGCAATCCAACTAGCTAAGCTAGGAAACACCCATGTCACGGCCACTTGTGGAGCTCGTAACATCGATTTCGTCAAGAGCTTGGGGGCTGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAGTAGCCCGTCTGGTCGGAAATACGATGCCGTGATCCACTGTGCAACAACCATTCCTTGGTCTACTTTTAAGCCGAATTTGAGTCCAAATGGGAAGGTCATAGAAATTAGTCCCAGTCTAAGTAACTGGCTCACTATGGCTGTAAACAAACTCACCTTCTCCAAGAAGCAGCTAGTGCAGCTGATGGTGAATCCCAAGGCTGAGAACCTGGATTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATTGACTCCAGACATCCTTTGAGCAAGGCTGAAGATGCTTGGGTTAAGAGTATCGATGGCCATGCTACTGGGAAAATCATTGTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

332

Amino Acids

35.14

Weight (kDa)

8.64

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 117	2.8e-17	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	170 - 282	3.2e-10	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	201 - 330	5.7e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	223
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	713
AciI	CCGC	5 cut(s)	14, 32, 181, 368, 495
AclWI	GGATC	2 cut(s)	85, 679
AcoI	YGGCCR	3 cut(s)	228, 561, 964
AcsI	RAATTY	2 cut(s)	265, 727
AcuI	CTGAAG	3 cut(s)	459, 657, 957
AfiI	CCNNNNNNNGG	5 cut(s)	410, 559, 639, 640, 708
AgsI	TTSAA	2 cut(s)	38, 271
AjnI	CCWGG	1 cut(s)	858
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	2 cut(s)	419, 437
AlwI	GGATC	2 cut(s)	85, 679
AoxI	GGCC	6 cut(s)	182, 228, 365, 469, 561, 964
ApeKI	GCWGC	9 cut(s)	134, 293, 383, 392, 443, 497, 644, 820, 829
ApoI	RAATTY	2 cut(s)	265, 727
AspS9I	GGNCC	2 cut(s)	59, 470
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	5 cut(s)	416, 796, 850, 892, 916
AvaII	GGWCC	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	966
BanII	GRGCYC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	9 cut(s)	146, 305, 379, 395, 430, 484, 656, 832, 841
BccI	CCATC	3 cut(s)	455, 829, 956
BceAI	ACGGC	3 cut(s)	372, 576, 665
BcgI	CGANNNNNNTGC	2 cut(s)	950, 984
BciT130I	CCWGG	1 cut(s)	860
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	419, 437
BfaI	CTAG	5 cut(s)	138, 363, 533, 542, 824
BfmI	CTRYAG	2 cut(s)	164, 444
BfuAI	ACCTGC	1 cut(s)	223
BlpI	GCTNAGC	1 cut(s)	537
Bme1390I	CCNGG	2 cut(s)	397, 860
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 470
BmiI	GGNNCC	1 cut(s)	993
BmrFI	CCNGG	2 cut(s)	397, 860
BmrI	ACTGGG	2 cut(s)	759, 984
BmsI	GCATC	2 cut(s)	667, 931
BmuI	ACTGGG	2 cut(s)	759, 984
BpmI	CTGGAG	3 cut(s)	333, 525, 898
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	881
BpuMI	CCSGG	1 cut(s)	397
Bsa29I	ATCGAT	2 cut(s)	585, 960
BsaBI	GATNNNNATC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	3 cut(s)	9, 707, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	5 cut(s)	410, 559, 639, 640, 708
Bse1I	ACTGG	5 cut(s)	316, 427, 765, 782, 979
Bse21I	CCTNAGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	860
BseCI	ATCGAT	2 cut(s)	585, 960
BseDI	CCNNGG	3 cut(s)	9, 707, 846
BseGI	GGATG	2 cut(s)	466, 919
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	5 cut(s)	410, 559, 639, 640, 708
BseMII	CTCAG	5 cut(s)	318, 363, 488, 641, 843
BseNI	ACTGG	5 cut(s)	316, 427, 765, 782, 979
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	9 cut(s)	146, 305, 379, 395, 430, 484, 656, 832, 841
BsgI	GTGCAG	1 cut(s)	848
BshFI	GGCC	6 cut(s)	184, 230, 367, 471, 563, 966
BshVI	ATCGAT	2 cut(s)	585, 960
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	2 cut(s)	231, 396
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	5 cut(s)	410, 559, 639, 640, 708
BsmAI	GTCTC	2 cut(s)	419, 437
BsmFI	GGGAC	1 cut(s)	747
BsnI	GGCC	6 cut(s)	184, 230, 367, 471, 563, 966
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	519, 577
Bsp143I	GATC	2 cut(s)	90, 684
Bsp1720I	GCTNAGC	1 cut(s)	537
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	5 cut(s)	14, 32, 181, 368, 495
BspANI	GGCC	6 cut(s)	184, 230, 367, 471, 563, 966
BspCNI	CTCAG	5 cut(s)	319, 364, 487, 642, 844
BspDI	ATCGAT	2 cut(s)	585, 960
BspLI	GGNNCC	1 cut(s)	993
BspMAI	CTGCAG	2 cut(s)	168, 448
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	85, 679
BspTNI	GGTCTC	1 cut(s)	419
BsrI	ACTGG	5 cut(s)	316, 427, 765, 782, 979
BssECI	CCNNGG	3 cut(s)	9, 707, 846
BssMI	GATC	2 cut(s)	90, 684
BssT1I	CCWWGG	3 cut(s)	9, 707, 846
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	2 cut(s)	692, 904
BstAPI	GCANNNNNTGC	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	7 cut(s)	327, 372, 474, 537, 650, 770, 852
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	466, 919
BstKTI	GATC	2 cut(s)	93, 687
BstMAI	GTCTC	2 cut(s)	419, 437
BstMBI	GATC	2 cut(s)	90, 684
BstMWI	GCNNNNNNNGC	6 cut(s)	332, 389, 392, 826, 829, 941
BstNI	CCWGG	1 cut(s)	860
BstNSI	RCATGY	2 cut(s)	32, 80
BstPI	GGTNACC	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	395, 858
BstSFI	CTRYAG	2 cut(s)	164, 444
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	9 cut(s)	146, 305, 379, 395, 430, 484, 656, 832, 841
BstXI	CCANNNNNNTGG	2 cut(s)	156, 974
Bsu15I	ATCGAT	2 cut(s)	585, 960
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	6 cut(s)	184, 230, 367, 471, 563, 966
BsuTUI	ATCGAT	2 cut(s)	585, 960
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	466, 919
BtsIMutI	CAGTG	3 cut(s)	434, 435, 688
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	59, 470
ClaI	ATCGAT	2 cut(s)	585, 960
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	5 cut(s)	10, 29, 77, 554, 968
DdeI	CTNAG	7 cut(s)	327, 372, 474, 537, 650, 770, 852
DpnI	GATC	2 cut(s)	92, 686
DpnII	GATC	2 cut(s)	90, 684
DraI	TTTAAA	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	3 cut(s)	228, 561, 964
Ecl136II	GAGCTC	1 cut(s)	575
Eco130I	CCWWGG	3 cut(s)	9, 707, 846
Eco24I	GRGCYC	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	575
Eco57I	CTGAAG	3 cut(s)	459, 657, 957
Eco81I	CCTNAGG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	575
EcoO109I	RGGNCCY	2 cut(s)	59, 470
EcoO65I	GGTNACC	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	3 cut(s)	9, 707, 846
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	3 cut(s)	9, 707, 846
FaeI	CATG	5 cut(s)	13, 32, 80, 557, 971
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	5 cut(s)	9, 28, 76, 553, 967
FblI	GTMKAC	1 cut(s)	713
FokI	GGATG	2 cut(s)	473, 906
FriOI	GRGCYC	1 cut(s)	577
FspBI	CTAG	5 cut(s)	138, 363, 533, 542, 824
GsuI	CTGGAG	3 cut(s)	333, 525, 898
HaeIII	GGCC	6 cut(s)	184, 230, 367, 471, 563, 966
HapII	CCGG	2 cut(s)	231, 396
Hin1II	CATG	5 cut(s)	13, 32, 80, 557, 971
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	5 cut(s)	85, 450, 733, 841, 911
HpaII	CCGG	2 cut(s)	231, 396
HphI	GGTGA	5 cut(s)	416, 796, 850, 892, 916
Hpy166II	GTNNAC	2 cut(s)	714, 796
Hpy188I	TCNGA	6 cut(s)	90, 102, 264, 477, 651, 669
Hpy188III	TCNNGA	5 cut(s)	504, 595, 620, 898, 915
Hpy8I	GTNNAC	2 cut(s)	714, 796
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	6 cut(s)	72, 632, 739, 817, 877, 881
HpyCH4III	ACNGT	2 cut(s)	692, 904
HpyCH4V	TGCA	8 cut(s)	28, 166, 320, 335, 446, 524, 695, 829
HpyF10VI	GCNNNNNNNGC	6 cut(s)	332, 389, 392, 826, 829, 941
HpyF3I	CTNAG	7 cut(s)	327, 372, 474, 537, 650, 770, 852
Hsp92II	CATG	5 cut(s)	13, 32, 80, 557, 971
Kzo9I	GATC	2 cut(s)	90, 684
LmnI	GCTCC	2 cut(s)	572, 991
Lsp1109I	GCAGC	9 cut(s)	146, 305, 379, 395, 430, 484, 656, 832, 841
LweI	GCATC	2 cut(s)	667, 931
MaeI	CTAG	5 cut(s)	138, 363, 533, 542, 824
MaeIII	GTNAC	4 cut(s)	399, 556, 578, 773
MalI	GATC	2 cut(s)	92, 686
MboI	GATC	2 cut(s)	90, 684
MboII	GAAGA	3 cut(s)	115, 490, 950
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	519, 577
MlsI	TGGCCA	1 cut(s)	966
MluCI	AATT	5 cut(s)	150, 199, 265, 727, 756
MluNI	TGGCCA	1 cut(s)	966
MlyI	GAGTC	3 cut(s)	459, 742, 905
MmeI	TCCRAC	3 cut(s)	229, 553, 647
Mox20I	TGGCCA	1 cut(s)	966
Mph1103I	ATGCAT	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	5 cut(s)	71, 720, 873, 951, 997
Msp20I	TGGCCA	1 cut(s)	966
MspA1I	CMGCKG	2 cut(s)	497, 832
MspI	CCGG	2 cut(s)	231, 396
MspR9I	CCNGG	2 cut(s)	397, 860
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	860
MwoI	GCNNNNNNNGC	6 cut(s)	332, 389, 392, 826, 829, 941
NciI	CCSGG	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	90, 684
NlaIII	CATG	5 cut(s)	13, 32, 80, 557, 971
NlaIV	GGNNCC	1 cut(s)	993
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	2 cut(s)	32, 80
PaeI	GCATGC	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	85, 841
PflMI	CCANNNNNTGG	1 cut(s)	708
PleI	GAGTC	3 cut(s)	458, 741, 905
PpsI	GAGTC	3 cut(s)	458, 741, 905
PpuMI	RGGWCCY	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	858
PspEI	GGTNACC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	1 cut(s)	993
PspPI	GGNCC	2 cut(s)	59, 470
PspPPI	RGGWCCY	1 cut(s)	59
PstI	CTGCAG	2 cut(s)	168, 448
PvuII	CAGCTG	1 cut(s)	832
SacI	GAGCTC	1 cut(s)	577
SaqAI	TTAA	5 cut(s)	71, 720, 873, 951, 997
Sau3AI	GATC	2 cut(s)	90, 684
Sau96I	GGNCC	2 cut(s)	59, 470
SchI	GAGTC	3 cut(s)	459, 742, 905
ScrFI	CCNGG	2 cut(s)	397, 860
SduI	GDGCHC	2 cut(s)	519, 577
SfaNI	GCATC	2 cut(s)	667, 931
SfcI	CTRYAG	2 cut(s)	164, 444
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	5 cut(s)	150, 199, 265, 727, 756
SsiI	CCGC	5 cut(s)	14, 32, 181, 368, 495
SspMI	CTAG	5 cut(s)	138, 363, 533, 542, 824
SstI	GAGCTC	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	395, 858
StyI	CCWWGG	3 cut(s)	9, 707, 846
TaaI	ACNGT	2 cut(s)	692, 904
TaqI	TCGA	3 cut(s)	243, 585, 960
TasI	AATT	5 cut(s)	150, 199, 265, 727, 756
TauI	GCSGC	2 cut(s)	184, 370
TfiI	GAWTC	2 cut(s)	85, 841
Tru1I	TTAA	5 cut(s)	71, 720, 873, 951, 997
Tru9I	TTAA	5 cut(s)	71, 720, 873, 951, 997
TscAI	CASTG	3 cut(s)	434, 442, 695
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	9 cut(s)	134, 293, 383, 392, 443, 497, 644, 820, 829
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	434, 442, 695
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	2 cut(s)	265, 727
XceI	RCATGY	2 cut(s)	32, 80
XmiI	GTMKAC	1 cut(s)	713
XspI	CTAG	5 cut(s)	138, 363, 533, 542, 824
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.