Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Reverse (-)

9468072 .. 9474620

Gene Structure 6549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1131100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3609 bp

ATGGAGCCGGACGTCAGCATCGAAACCAGCTCCATGATCCGTGTGACTGTCCTCCCCATTGGCCACGTGCCCCCCGTCCTCCTCCGCGATTACCACTCGATGCTGCTCCGCCACCAGACGATCCCTCTCTCCGCCATCAGCTCCTTCTACACTGAGCACCAGAAGTCCCCCTTCGCCCACCAGCCCTGGGATTCCGGCAACCTCCGATTCAAGTTCGTCCTTGGCGGGGCCCCACCGTCCCCGTGGGAGGACTTCCAGTCCAATCGCAAAACCCTAGCTGTCATCGGCATCTGCCACTGCCCCTCGTCTCCCGATCTCGACTCCGTCATCGATCAATTCGACTCGGCTCGCCGCGCCTACTCCTCCGCCCTCGTCGATCGCTGCTTCGCCTTCTGCCCCGGCGATTCTCAGTTGGAGGATGGGAGCAAGAAAGGAGGGAACTTGATGCTGTTTCCGCCGGCGGATCGGGCGACTCTGGAGTTCCACCTGCAGACAATGATGCAGGACATTGCGGCGTCACTGCTGATGGAGTTCGAGAAATGGGTGCTGAAAGCTGAGCCTGCAGGAACCATTGTCAAGACGCCTTTGGATTCTCAAGCCACTCTCAACTCAGAGGAGGTTATAAAGGCGAAGAAGCGGAGGCTCGGGCGAGCGCAGAAGACAATGGGTGATTATTGCTTGTTGGCAGGATCACCTGTTGATGCCAATGCTCATTACTCTACCGCACTAGAACTTGCTAGGTTGACCGGAGATTTTTTCTGGTATGCTGGTGCATTGGAGGGCAGTGTCTGTGCCTTACTGATTGATCGAATGGGCGAAAGGGATTCAGGTGTCGATGATGAAGTTAGATATCGATACAGTAGTGTCATCTTGCACTACAGGAAGTCATTTATACAAGAAAATGCTCAAAGAGTTTCACCCTTAACATTTGAACTAGAGGCTACATTGAAACTGGCAAGGTTTCTTTGCAGACGGGAGCTGGCTAAGGAGGTAGTGGAACTACTTACAAGTGCAGCAGATGGTGCTAAATCTCTGATTGATGCCAGTGATAGACTTGTATTATATGTTGAAATAGCTCGTTTATATGGTACTCTTGGTTATCAGCGAAAGGCTGCTTTTTTCTCAAGGCAAGTGGCTCAGTTATATCTACAGCAGGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTTTAGCAATGACAACAAGAGCCTACCGTGTTCAAAGTAGAGCTTCCATCTCTGAAGATTTGCTTCCTAAAAAGGAAATCGGGTCAAATCTTGCAGAGGGTGGGAAAATGCTCCACCAGTCAGTAGTCTCTCTTTTTGAGTCTCAGTGGAGCACACTACAGATGGTTGTACTCAGAGAGATTCTGCTATCCGCTGTCCGTGCAGGAGATCCTCTAGCTGCCTGGGGTGCAGCTGCAAGATTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAAATGGTCTTGCTAGTGCACTTTCAAATTCAGCAGATAGGTTGCCCTCGGGAACTCGCTGTGCTGACCCTGCTTTACCCTTCATCAGATTGTATTCTTTTCCTCTCCATCCTTCACAAATGGACATTGTAAAGCGCAATCCAGCAAGAGAAGACTGGTGGGCAGGAGCTGCTAATACTGGTCCGTTTATTTATACACCATTCAGCAAGGGAGACACAAATAGTAACGCCAAACAGGACCTCATTTGGATTGTTGGAGAACCTGTTCAGATTTTAGTCGAACTGGCAAACCCATGTGGCTTTGATTTGAGGGTTGATAGCATTTATCTCTCAGTGCCTTCAGGAAATTTTGATGCTTTTCCTGTTACTGTAAATCTTCCACCCAATTCATCAAAAGTGATCACCTTATCTGGGATCCCGATTGCAGTTGGGCCAGTGACAATTCCTGGGTGCACTGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGATAATCTGCTTCTTGGAGCTACACAAGGACTTGTGCTTTCTGACCCTTTCAGATGCTGTGGGTCTGCGAGGTTGAAAAATATATCTGTTCCGAACATTTCTGTGGTACCACCATTACCATTGCTGGTTTCACGTGTAGTTGGTGGTGATGGTGCAATCATTCTTCATGAAGGTGAAATTCGTGATGTGTGGATCAGTCTGGCTAATGCAGGTACAGTTCCAGTTGAGCAAGCACATGTATCATTATCAGGAAAAAACCAAGATTCTGTTATCTCGATTGCCTCTGAAACCTTAAAATCAGCCCTTCCTTTGAGGCCTGGGGCCGAAGTGACTATACCTGTGACCTTAAAAGCTTGGCGCCATGTCATAGCAGATCCTGAGACTGCTGCAGGCAGGAGTGCCTCTGGAAGCACTGCGAGGCAGTCTAAGGATGGAAGTAACCCCATATTGTTAATCCATTATGCAGGGCCTCTGACACATGCTGGAGATCCTCCAACAGATAAATCTGCTATCCCCCCTGGCAGGCGCCTTCTTGTTCCTTTGCAGATTTGTGTTCTTCAGGGTTTGTCTTTTGTAAAGGCTCGTCTGCTTTCGATGGAGATTCCTGCACAAGTGGGTGTCAACCTTCCAAAACCAGTTGATATTGAGAATAGCCCTACTGAAGCTCTTGGTTCTCCTACTAAGATGGACAGATTGGTGAAGATTGATCCTTTCAGAGGAAGCTGGGGACTACGCTTTCTTGAACTCGAGTTGTCTAATCCCACAGATGTTGTGTTTGAAATTACTGTTTCTGTCCAGCTGGAGAACGCTAGTCATGAGCATATACTTTCTGGTGATCAAGATGCCACTGAATATGGTTACCCTAAAACAAGAATTGATCGGGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAACTACCAGTTCTTGATGATTCGTTTTTTGTGAAGGATAATCTGGCAGATGGGGCTGTTAGTGGCAGAAACTCAAGCTTCTCGGAACGGAATACTAAAGCTGAACTTAATGCTTCTATCAAGAGCCTCATATCTAAGATAAAGGTTAGGTGGCAATCAGGGCGAAGCAGCTCTGGAGAATTGAATATCAAGGATGCTATACAGGCAGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGATCCATTGACATTTTGCTTCAGGCTTTCTAGAAACGGCCTTGCACCTGAAAATTCTGGTTCACACGCACAGGCCAATTTTCAAGTTCACCCTTCTGCAGCTAAGGGTTCTGTGCTGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAATAACACGAAGGAGATGATCAAAATGAGTCTTAGCATTACATGCAGAGACGTTGCTGGAGAGAATTGTATAGAGTGTACAAAGGCAACTGTCTTGTATTCTGGTGTTTTGAGCGGGATCACTGTGGAGGTTCCACCACTTGAAGAAATTAAGCATTCTTTCTCCTTGTATTTTCTTGTCCCGGGTGAGTACACACTGGTAGCTGCCTCAGTGATTGATGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACAAAATCATCCGATGAGCCAATATTCTGCCGCGGGCCCCCATATCATGTTCGTGTTGTTGGGACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1203

Amino Acids

131.01

Weight (kDa)

6.39

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	9 - 186	3.2e-17	Trs120/TRAPPC9, N-terminal domain
TRAPPC9-Trs120	PF08626	202 - 268	4.5e-11	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	330 - 499	7.7e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	547 - 646	2.3e-19	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	887 - 1042	9.4e-12	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	1076 - 1198	4.4e-13	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	2 cut(s)	495, 1468
AatII	GACGTC	1 cut(s)	15
Acc36I	ACCTGC	3 cut(s)	495, 1468, 2168
Acc65I	GGTACC	1 cut(s)	2074
AccB1I	GGYRCC	3 cut(s)	2074, 2325, 2493
AccBSI	CCGCTC	1 cut(s)	3399
AccII	CGCG	3 cut(s)	87, 354, 3570
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	4 cut(s)	1495, 1813, 2145, 3184
AcuI	CTGAAG	6 cut(s)	1263, 1791, 2510, 2649, 3086, 3136
AcvI	CACGTG	2 cut(s)	67, 2102
AcyI	GRCGYC	5 cut(s)	12, 515, 581, 2326, 2494
AfaI	GTAC	8 cut(s)	1090, 1359, 2076, 2182, 2868, 3123, 3364, 3476
AfiI	CCNNNNNNNGG	7 cut(s)	187, 226, 247, 1878, 1960, 2490, 2684
AflIII	ACRYGT	2 cut(s)	2101, 2203
AhdI	GACNNNNNGTC	1 cut(s)	256
AjnI	CCWGG	5 cut(s)	185, 1409, 1912, 2284, 2485
AloI	GAACNNNNNNTCC	2 cut(s)	1716, 1748
Alw21I	GWGCWC	4 cut(s)	159, 1343, 1489, 1922
Alw26I	GTCTC	6 cut(s)	312, 1321, 1335, 1674, 2342, 3327
Alw44I	GTGCAC	2 cut(s)	1485, 1918
AlwNI	CAGNNNCTG	4 cut(s)	789, 1637, 2025, 2345
Ama87I	CYCGRG	4 cut(s)	644, 1516, 2714, 3466
AoxI	GGCC	9 cut(s)	61, 228, 1898, 2282, 2289, 2435, 3169, 3204, 3572
ApaI	GGGCCC	2 cut(s)	232, 3576
ApaLI	GTGCAC	2 cut(s)	1485, 1918
ApoI	RAATTY	4 cut(s)	1495, 1813, 2145, 3184
Asp700I	GAANNNNTTC	1 cut(s)	1731
Asp718I	GGTACC	1 cut(s)	2074
AspLEI	GCGC	6 cut(s)	356, 655, 1605, 2328, 2496, 3253
AspS9I	GGNCC	9 cut(s)	228, 229, 1649, 1705, 1898, 2289, 2435, 3572, 3573
AsuC2I	CCSGG	3 cut(s)	399, 3467, 3468
AvaI	CYCGRG	4 cut(s)	644, 1516, 2714, 3466
AvaII	GGWCC	2 cut(s)	1649, 1705
AxyI	CCTNAGG	1 cut(s)	3521
BaeGI	GKGCMC	5 cut(s)	72, 232, 1489, 1922, 3576
BaeI	ACNNNNGTAYC	2 cut(s)	847, 880
BalI	TGGCCA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	1881
BanI	GGYRCC	3 cut(s)	2074, 2325, 2493
BanII	GRGCYC	3 cut(s)	232, 3529, 3576
BarI	GAAGNNNNNNTAC	2 cut(s)	2286, 2318
BauI	CACGAG	1 cut(s)	3528
BbrPI	CACGTG	2 cut(s)	67, 2102
BbsI	GAAGAC	2 cut(s)	665, 1626
Bbv12I	GWGCWC	4 cut(s)	159, 1343, 1489, 1922
BceAI	ACGGC	1 cut(s)	3184
BciT130I	CCWGG	5 cut(s)	187, 1411, 1914, 2286, 2487
BclI	TGATCA	3 cut(s)	1866, 2803, 3303
BcnI	CCSGG	3 cut(s)	399, 3467, 3468
BcoDI	GTCTC	6 cut(s)	312, 1321, 1335, 1674, 2342, 3327
BfaI	CTAG	8 cut(s)	275, 728, 738, 935, 1403, 1482, 2778, 3162
BfmI	CTRYAG	7 cut(s)	488, 561, 877, 1148, 1346, 2355, 3228
BfoI	RGCGCY	2 cut(s)	2329, 2497
BfuAI	ACCTGC	3 cut(s)	495, 1468, 2168
BlpI	GCTNAGC	1 cut(s)	555
Bme1390I	CCNGG	8 cut(s)	187, 399, 1411, 1914, 2286, 2487, 3467, 3468
Bme18I	GGWCC	2 cut(s)	1649, 1705
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmeT110I	CYCGRG	4 cut(s)	644, 1516, 2714, 3466
BmgT120I	GGNCC	9 cut(s)	228, 229, 1649, 1705, 1898, 2289, 2435, 3572, 3573
BmrFI	CCNGG	8 cut(s)	187, 399, 1411, 1914, 2286, 2487, 3467, 3468
BpiI	GAAGAC	2 cut(s)	665, 1626
BpmI	CTGGAG	6 cut(s)	497, 2472, 2789, 2900, 3084, 3363
Bpu10I	CCTNAGC	2 cut(s)	984, 3234
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	3 cut(s)	579, 1108, 2947
BpuMI	CCSGG	3 cut(s)	399, 3467, 3468
Bsa29I	ATCGAT	2 cut(s)	330, 853
BsaAI	YACGTR	2 cut(s)	67, 2102
BsaHI	GRCGYC	5 cut(s)	12, 515, 581, 2326, 2494
BsaWI	WCCGGW	1 cut(s)	746
BsaXI	ACNNNNNCTCC	2 cut(s)	1716, 1746
Bsc4I	CCNNNNNNNGG	7 cut(s)	187, 226, 247, 1878, 1960, 2490, 2684
Bse118I	RCCGGY	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	3521
Bse3DI	GCAATG	4 cut(s)	507, 1188, 1203, 2087
BseBI	CCWGG	5 cut(s)	187, 1411, 1914, 2286, 2487
BseCI	ATCGAT	2 cut(s)	330, 853
BseGI	GGATG	7 cut(s)	424, 1576, 1969, 2404, 3088, 3124, 3545
BseLI	CCNNNNNNNGG	7 cut(s)	187, 226, 247, 1878, 1960, 2490, 2684
BseMI	GCAATG	4 cut(s)	507, 1188, 1203, 2087
BseRI	GAGGAG	3 cut(s)	71, 352, 629
BseSI	GKGCMC	5 cut(s)	72, 232, 1489, 1922, 3576
BseYI	CCCAGC	2 cut(s)	1463, 2691
BsgI	GTGCAG	4 cut(s)	1032, 1410, 1437, 2559
Bsh1236I	CGCG	3 cut(s)	87, 354, 3570
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	9 cut(s)	63, 230, 1900, 2284, 2291, 2437, 3171, 3206, 3574
BshNI	GGYRCC	3 cut(s)	2074, 2325, 2493
BshVI	ATCGAT	2 cut(s)	330, 853
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	4 cut(s)	159, 1343, 1489, 1922
BsiHKCI	CYCGRG	4 cut(s)	644, 1516, 2714, 3466
BsiSI	CCGG	6 cut(s)	8, 195, 399, 458, 747, 3467
BslFI	GGGAC	4 cut(s)	151, 223, 2709, 3449
BslI	CCNNNNNNNGG	7 cut(s)	187, 226, 247, 1878, 1960, 2490, 2684
BsmAI	GTCTC	6 cut(s)	312, 1321, 1335, 1674, 2342, 3327
BsmBI	CGTCTC	2 cut(s)	312, 3327
BsmFI	GGGAC	4 cut(s)	151, 223, 2709, 3449
BsmI	GAATGC	1 cut(s)	3439
BsnI	GGCC	9 cut(s)	63, 230, 1900, 2284, 2291, 2437, 3171, 3206, 3574
BsoBI	CYCGRG	4 cut(s)	644, 1516, 2714, 3466
Bsp120I	GGGCCC	2 cut(s)	228, 3572
Bsp1286I	GDGCHC	8 cut(s)	72, 159, 232, 1343, 1489, 1922, 3529, 3576
Bsp1407I	TGTACA	1 cut(s)	3362
Bsp1720I	GCTNAGC	1 cut(s)	555
BspANI	GGCC	9 cut(s)	63, 230, 1900, 2284, 2291, 2437, 3171, 3206, 3574
BspDI	ATCGAT	2 cut(s)	330, 853
BspFNI	CGCG	3 cut(s)	87, 354, 3570
BspHI	TCATGA	2 cut(s)	2134, 2782
BspMAI	CTGCAG	4 cut(s)	492, 565, 2359, 3232
BspMI	ACCTGC	3 cut(s)	495, 1468, 2168
BspT107I	GGYRCC	3 cut(s)	2074, 2325, 2493
BsrBI	CCGCTC	1 cut(s)	3399
BsrDI	GCAATG	4 cut(s)	507, 1188, 1203, 2087
BsrFI	RCCGGY	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	3362
BssAI	RCCGGY	1 cut(s)	457
BssNI	GRCGYC	5 cut(s)	12, 515, 581, 2326, 2494
BssSI	CACGAG	1 cut(s)	3528
BssT1I	CCWWGG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	3528
Bst2UI	CCWGG	5 cut(s)	187, 1411, 1914, 2286, 2487
BstACI	GRCGYC	5 cut(s)	12, 515, 581, 2326, 2494
BstAPI	GCANNNNNTGC	3 cut(s)	1022, 1637, 3327
BstAUI	TGTACA	1 cut(s)	3362
BstBAI	YACGTR	2 cut(s)	67, 2102
BstDSI	CCRYGG	2 cut(s)	242, 3568
BstEII	GGTNACC	1 cut(s)	2825
BstENI	CCTNNNNNAGG	2 cut(s)	1958, 2682
BstF5I	GGATG	7 cut(s)	424, 1576, 1969, 2404, 3088, 3124, 3545
BstFNI	CGCG	3 cut(s)	87, 354, 3570
BstH2I	RGCGCY	2 cut(s)	2329, 2497
BstHHI	GCGC	6 cut(s)	356, 655, 1605, 2328, 2496, 3253
BstMAI	GTCTC	6 cut(s)	312, 1321, 1335, 1674, 2342, 3327
BstMCI	CGRYCG	1 cut(s)	379
BstNI	CCWGG	5 cut(s)	187, 1411, 1914, 2286, 2487
BstNSI	RCATGY	3 cut(s)	2207, 2450, 3330
BstPI	GGTNACC	1 cut(s)	2825
BstSCI	CCNGG	8 cut(s)	185, 397, 1409, 1912, 2284, 2485, 3465, 3466
BstSFI	CTRYAG	7 cut(s)	488, 561, 877, 1148, 1346, 2355, 3228
BstSLI	GKGCMC	5 cut(s)	72, 232, 1489, 1922, 3576
BstUI	CGCG	3 cut(s)	87, 354, 3570
BstV2I	GAAGAC	2 cut(s)	665, 1626
BstX2I	RGATCY	5 cut(s)	1396, 1881, 2341, 2455, 3133
BstXI	CCANNNNNNTGG	1 cut(s)	1934
BstYI	RGATCY	5 cut(s)	1396, 1881, 2341, 2455, 3133
Bsu15I	ATCGAT	2 cut(s)	330, 853
Bsu36I	CCTNAGG	1 cut(s)	3521
BsuRI	GGCC	9 cut(s)	63, 230, 1900, 2284, 2291, 2437, 3171, 3206, 3574
BsuTUI	ATCGAT	2 cut(s)	330, 853
BtgI	CCRYGG	2 cut(s)	242, 3568
BtsCI	GGATG	7 cut(s)	424, 1576, 1969, 2404, 3088, 3124, 3545
BtsI	GCAGTG	5 cut(s)	295, 518, 790, 1927, 2379
BveI	ACCTGC	3 cut(s)	495, 1468, 2168
CaiI	CAGNNNCTG	4 cut(s)	789, 1637, 2025, 2345
CciI	TCATGA	2 cut(s)	2134, 2782
CfoI	GCGC	6 cut(s)	356, 655, 1605, 2328, 2496, 3253
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	9 cut(s)	228, 229, 1649, 1705, 1898, 2289, 2435, 3572, 3573
Cfr42I	CCGCGG	1 cut(s)	3571
Cfr9I	CCCGGG	1 cut(s)	3466
ClaI	ATCGAT	2 cut(s)	330, 853
CseI	GACGC	2 cut(s)	504, 589
Csp6I	GTAC	8 cut(s)	1089, 1358, 2075, 2181, 2867, 3122, 3363, 3475
CspCI	CAANNNNNGTGG	4 cut(s)	1113, 1148, 2719, 2754
CviQI	GTAC	8 cut(s)	1089, 1358, 2075, 2181, 2867, 3122, 3363, 3475
DinI	GGCGCC	2 cut(s)	2327, 2495
DraI	TTTAAA	1 cut(s)	2890
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	61
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EciI	GGCGGA	5 cut(s)	98, 121, 355, 444, 476
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	2284
Eco24I	GRGCYC	3 cut(s)	232, 3529, 3576
Eco32I	GATATC	2 cut(s)	851, 3517
Eco47I	GGWCC	2 cut(s)	1649, 1705
Eco57I	CTGAAG	6 cut(s)	1263, 1791, 2510, 2649, 3086, 3136
Eco72I	CACGTG	2 cut(s)	67, 2102
Eco81I	CCTNAGG	1 cut(s)	3521
Eco88I	CYCGRG	4 cut(s)	644, 1516, 2714, 3466
Eco91I	GGTNACC	1 cut(s)	2825
EcoNI	CCTNNNNNAGG	2 cut(s)	1958, 2682
EcoO109I	RGGNCCY	5 cut(s)	228, 229, 1705, 2435, 3573
EcoO65I	GGTNACC	1 cut(s)	2825
EcoRII	CCWGG	5 cut(s)	185, 1409, 1912, 2284, 2485
EcoRV	GATATC	2 cut(s)	851, 3517
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	3 cut(s)	232, 3529, 3576
EgeI	GGCGCC	2 cut(s)	2327, 2495
EheI	GGCGCC	2 cut(s)	2327, 2495
ErhI	CCWWGG	1 cut(s)	220
Esp3I	CGTCTC	2 cut(s)	312, 3327
FalI	AAGNNNNNCTT	8 cut(s)	155, 187, 1216, 1248, 1236, 1268, 2979, 3011
FaqI	GGGAC	4 cut(s)	151, 223, 2709, 3449
FauI	CCCGC	3 cut(s)	218, 3392, 3563
FbaI	TGATCA	3 cut(s)	1866, 2803, 3303
FokI	GGATG	7 cut(s)	431, 1563, 1976, 2411, 3095, 3131, 3532
FriOI	GRGCYC	3 cut(s)	232, 3529, 3576
FspBI	CTAG	8 cut(s)	275, 728, 738, 935, 1403, 1482, 2778, 3162
GlaI	GCGC	6 cut(s)	355, 654, 1604, 2327, 2495, 3252
GsaI	CCCAGC	2 cut(s)	1467, 2695
GsuI	CTGGAG	6 cut(s)	497, 2472, 2789, 2900, 3084, 3363
HaeII	RGCGCY	2 cut(s)	2329, 2497
HaeIII	GGCC	9 cut(s)	63, 230, 1900, 2284, 2291, 2437, 3171, 3206, 3574
HapII	CCGG	6 cut(s)	8, 195, 399, 458, 747, 3467
HgaI	GACGC	2 cut(s)	504, 589
HhaI	GCGC	6 cut(s)	356, 655, 1605, 2328, 2496, 3253
Hin1I	GRCGYC	5 cut(s)	12, 515, 581, 2326, 2494
Hin6I	GCGC	6 cut(s)	354, 653, 1603, 2326, 2494, 3251
HinP1I	GCGC	6 cut(s)	354, 653, 1603, 2326, 2494, 3251
HincII	GTYRAC	2 cut(s)	744, 2590
HindII	GTYRAC	2 cut(s)	744, 2590
HindIII	AAGCTT	2 cut(s)	2319, 2965
HpaII	CCGG	6 cut(s)	8, 195, 399, 458, 747, 3467
Hpy166II	GTNNAC	9 cut(s)	744, 1487, 1920, 1927, 2590, 3194, 3220, 3363, 3477
Hpy8I	GTNNAC	9 cut(s)	744, 1487, 1920, 1927, 2590, 3194, 3220, 3363, 3477
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4IV	ACGT	4 cut(s)	12, 66, 2101, 3336
HpySE526I	ACGT	4 cut(s)	12, 66, 2101, 3336
Hsp92I	GRCGYC	5 cut(s)	12, 515, 581, 2326, 2494
HspAI	GCGC	6 cut(s)	354, 653, 1603, 2326, 2494, 3251
KasI	GGCGCC	2 cut(s)	2325, 2493
KpnI	GGTACC	1 cut(s)	2078
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Ksp22I	TGATCA	3 cut(s)	1866, 2803, 3303
KspI	CCGCGG	1 cut(s)	3571
MaeI	CTAG	8 cut(s)	275, 728, 738, 935, 1403, 1482, 2778, 3162
MaeII	ACGT	4 cut(s)	12, 66, 2101, 3336
MaeIII	GTNAC	9 cut(s)	43, 516, 1691, 1831, 1903, 2296, 2308, 2405, 2825
MbiI	CCGCTC	1 cut(s)	3399
MboII	GAAGA	9 cut(s)	643, 670, 1256, 1631, 1835, 2123, 2516, 2680, 3440
MflI	RGATCY	5 cut(s)	1396, 1881, 2341, 2455, 3133
MhlI	GDGCHC	8 cut(s)	72, 159, 232, 1343, 1489, 1922, 3529, 3576
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
Mly113I	GGCGCC	2 cut(s)	2326, 2494
MlyI	GAGTC	6 cut(s)	314, 335, 466, 1337, 3256, 3322
MmeI	TCCRAC	3 cut(s)	393, 1702, 2486
Mox20I	TGGCCA	1 cut(s)	63
MreI	CGCCGGCG	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	1731
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	9 cut(s)	923, 1451, 1959, 2261, 2315, 2420, 2889, 2997, 3435
MslI	CAYNNNNRTG	3 cut(s)	2069, 2139, 3588
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	4 cut(s)	1382, 1421, 2767, 3570
MspI	CCGG	6 cut(s)	8, 195, 399, 458, 747, 3467
MspR9I	CCNGG	8 cut(s)	187, 399, 1411, 1914, 2286, 2487, 3467, 3468
Mva1269I	GAATGC	1 cut(s)	3439
MvaI	CCWGG	5 cut(s)	187, 1411, 1914, 2286, 2487
MvnI	CGCG	3 cut(s)	87, 354, 3570
NaeI	GCCGGC	1 cut(s)	459
NarI	GGCGCC	2 cut(s)	2326, 2494
NciI	CCSGG	3 cut(s)	399, 3467, 3468
NgoMIV	GCCGGC	1 cut(s)	457
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	5 cut(s)	43, 516, 1903, 2296, 2308
NspI	RCATGY	3 cut(s)	2207, 2450, 3330
PaeR7I	CTCGAG	1 cut(s)	2714
PagI	TCATGA	2 cut(s)	2134, 2782
PaqCI	CACCTGC	2 cut(s)	495, 1468
PasI	CCCWGGG	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	2284
PciI	ACATGT	1 cut(s)	2203
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 72, 336
PctI	GAATGC	1 cut(s)	3439
PdiI	GCCGGC	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	1731
PfeI	GAWTC	9 cut(s)	191, 207, 404, 590, 824, 1369, 2231, 2569, 2909
PflFI	GACNNNGTC	1 cut(s)	323
Ple19I	CGATCG	1 cut(s)	379
PleI	GAGTC	6 cut(s)	314, 335, 466, 1336, 3256, 3321
PluTI	GGCGCC	2 cut(s)	2329, 2497
PmaCI	CACGTG	2 cut(s)	67, 2102
PmlI	CACGTG	2 cut(s)	67, 2102
PpsI	GAGTC	6 cut(s)	314, 335, 466, 1336, 3256, 3321
Ppu21I	YACGTR	2 cut(s)	67, 2102
PpuMI	RGGWCCY	1 cut(s)	1705
PscI	ACATGT	1 cut(s)	2203
PsiI	TTATAA	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	1705
Psp6I	CCWGG	5 cut(s)	185, 1409, 1912, 2284, 2485
PspCI	CACGTG	2 cut(s)	67, 2102
PspEI	GGTNACC	1 cut(s)	2825
PspFI	CCCAGC	2 cut(s)	1463, 2691
PspGI	CCWGG	5 cut(s)	185, 1409, 1912, 2284, 2485
PspOMI	GGGCCC	2 cut(s)	228, 3572
PspPI	GGNCC	9 cut(s)	228, 229, 1649, 1705, 1898, 2289, 2435, 3572, 3573
PspPPI	RGGWCCY	1 cut(s)	1705
PspXI	VCTCGAGB	1 cut(s)	2714
PstI	CTGCAG	4 cut(s)	492, 565, 2359, 3232
PstNI	CAGNNNCTG	4 cut(s)	789, 1637, 2025, 2345
PsuI	RGATCY	5 cut(s)	1396, 1881, 2341, 2455, 3133
PsyI	GACNNNGTC	1 cut(s)	323
PvuI	CGATCG	1 cut(s)	379
PvuII	CAGCTG	2 cut(s)	1421, 2767
RsaI	GTAC	8 cut(s)	1090, 1359, 2076, 2182, 2868, 3123, 3364, 3476
RsaNI	GTAC	8 cut(s)	1089, 1358, 2075, 2181, 2867, 3122, 3363, 3475
RseI	CAYNNNNRTG	3 cut(s)	2069, 2139, 3588
SacII	CCGCGG	1 cut(s)	3571
SaqAI	TTAA	9 cut(s)	923, 1451, 1959, 2261, 2315, 2420, 2889, 2997, 3435
Sau96I	GGNCC	9 cut(s)	228, 229, 1649, 1705, 1898, 2289, 2435, 3572, 3573
SbfI	CCTGCAGG	1 cut(s)	565
SchI	GAGTC	6 cut(s)	314, 335, 466, 1337, 3256, 3322
ScrFI	CCNGG	8 cut(s)	187, 399, 1411, 1914, 2286, 2487, 3467, 3468
SdaI	CCTGCAGG	1 cut(s)	565
SduI	GDGCHC	8 cut(s)	72, 159, 232, 1343, 1489, 1922, 3529, 3576
SfcI	CTRYAG	7 cut(s)	488, 561, 877, 1148, 1346, 2355, 3228
SfoI	GGCGCC	2 cut(s)	2327, 2495
Sfr274I	CTCGAG	1 cut(s)	2714
Sfr303I	CCGCGG	1 cut(s)	3571
SgrAI	CRCCGGYG	1 cut(s)	457
SgrBI	CCGCGG	1 cut(s)	3571
SinI	GGWCC	2 cut(s)	1649, 1705
SlaI	CTCGAG	1 cut(s)	2714
SmaI	CCCGGG	1 cut(s)	3468
SmiMI	CAYNNNNRTG	3 cut(s)	2069, 2139, 3588
SmlI	CTYRAG	4 cut(s)	594, 1123, 2714, 2962
SmoI	CTYRAG	4 cut(s)	594, 1123, 2714, 2962
Sse8387I	CCTGCAGG	1 cut(s)	565
SseBI	AGGCCT	1 cut(s)	2284
SspDI	GGCGCC	2 cut(s)	2325, 2493
SspI	AATATT	1 cut(s)	3561
SspMI	CTAG	8 cut(s)	275, 728, 738, 935, 1403, 1482, 2778, 3162
StuI	AGGCCT	1 cut(s)	2284
StyD4I	CCNGG	8 cut(s)	185, 397, 1409, 1912, 2284, 2485, 3465, 3466
StyI	CCWWGG	1 cut(s)	220
TaiI	ACGT	4 cut(s)	15, 69, 2104, 3339
TatI	WGTACW	4 cut(s)	1357, 3121, 3362, 3474
TauI	GCSGC	3 cut(s)	354, 515, 3570
TfiI	GAWTC	9 cut(s)	191, 207, 404, 590, 824, 1369, 2231, 2569, 2909
Tru1I	TTAA	9 cut(s)	923, 1451, 1959, 2261, 2315, 2420, 2889, 2997, 3435
Tru9I	TTAA	9 cut(s)	923, 1451, 1959, 2261, 2315, 2420, 2889, 2997, 3435
TseFI	GTSAC	5 cut(s)	43, 516, 1903, 2296, 2308
Tsp45I	GTSAC	5 cut(s)	43, 516, 1903, 2296, 2308
TspDTI	ATGAA	6 cut(s)	855, 1540, 1845, 2123, 2151, 3270
TspGWI	ACGGA	5 cut(s)	29, 313, 1376, 1641, 2992
TspMI	CCCGGG	1 cut(s)	3466
Tth111I	GACNNNGTC	1 cut(s)	323
VneI	GTGCAC	2 cut(s)	1485, 1918
VpaK11BI	GGWCC	2 cut(s)	1649, 1705
XagI	CCTNNNNNAGG	2 cut(s)	1958, 2682
XapI	RAATTY	4 cut(s)	1495, 1813, 2145, 3184
XbaI	TCTAGA	1 cut(s)	3161
XceI	RCATGY	3 cut(s)	2207, 2450, 3330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	2714
XmaI	CCCGGG	1 cut(s)	3466
XmnI	GAANNNNTTC	1 cut(s)	1731
XspI	CTAG	8 cut(s)	275, 728, 738, 935, 1403, 1482, 2778, 3162
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.