Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

22247774 .. 22253940

Gene Structure 6167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28290.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3597 bp

ATGGAGCCGGACGTCAGCATCGAAACCAGCTCCATGATCCGCGTGGCGGTCCTCCCGATCGGCCACGTCCCCCCGGTGCTGCTGCGCGACTACCACGCGATGCTGCTCCGCCACCAGACGATCCCTCTCTCCGCCGTCAGCTCCTTCTACACGGAGCACCAGAAGTCGCCGTTCGCTCACCAGCCCTGGGACTCCGGCAGCCTCCGCTTCAAGTTCGTCCTCGGCGGCGCCCCTCCCTCCCCCTGGGAGGACTTCCAGTCCAACCGCAAAACCCTCGCCGTCATCGGCATCTGCCACTGCCCTTCCTCCCCCGATCTCGGCTCCGTCATGGATCAATTCGACACCGCCTGCCGCGCCTACCCCGCCGCCCTCGTCGAGCGCTGCTTCGCCTTCTCTCCCGCCGATTCTCAGTTGGAGGATGGGAGTAAGAAAGGATGGAATTTAATGCTGTTTCCGCCTGCGGATCGGGCGACGCAGGAGTTTCACTTGCAAACAATGATGCAGGACATAGCGGCGTCATTGCTAATGGAGTTTGAGAAATGGGTGCTTAAGGCGGAGCCGGCAGGGACTATTGTCAAGACGCCGTTGGATTCTCAAGCTACTCTCAACTCTGAGGAGGTTATAAAGGCGAAGAAGCGGAGGCTTGGGCGTGCACAGAAGACAATGGGAGATTATTGCATGCTGGCAGGATCACCAGTTGATGCCAATCTTCATTACTCTACTGCGCTGGAACTTGCTAGGTTGACTGGAGATTTTTTCTGGTATGCTGGTGCATTGGAGGGGAGCGTTTGTGCATTACTGATTGACCAAATGGGCCAAAAGGATACAGCCGTGGAAGAAGAAGTCAGATATCGGTATAGTAGTGTCATTTTGCACTACAAGAAGTCATTCATACAAGAAAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTAGCAAGGTTTCTTTGCAGACGAGAGCTGGCTAAGGAGGTAGTGGAGCTACTAACAAATGCAGCAGATGGTGCGAAATCTCTGATTGATGCCAGTGATAGACTTGTACTCTATGTTGAAATTGCTCGTTTGTATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCTAGGCAGGTAGCCCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTGTTGGCAATGACCACAAAAGCCTACCGGGTTCAAAGTAAAGCTTCAGTCTTAGAAGATTCTCTTTCCAAAGAAACTGGATCAGGTCTTGCTGAGAGTGGGAAAATACTCCACCAGTCGGTAGTGTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCCTGGGGTGCAGCAGCAAGACTACTAAGATCATATTATCCTTTAATTACGCCTGCTGGGCAAAATGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCATCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTATATTCTTTTCCTCTCCATCCCTCACAAATGGACATTGTCAAGCGCAATCCTGCTAGAGAAGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTACACGCCATTCAGCAAGGGAGAGCCAAGCAATAGCAGCAAACAGGAGTTGATATGGATAGTTGGAGAACCAGTTCAGATTCTGGTAGAACTGGCAAACCCATGCGGCTTTGATTTGAAGGTCGATAGTATATATCTCTCCGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCGCTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATTCCAACTTCAGTGGGGCCAGTGACAATACCTGGATGCACCGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTTTCTGACCCTTTCAGATGCTGTGGGTCTGCAAGGTTGAAAAATATATCTGTCCCAAGTATTTCTGTAGTTCCACCGCTGCCATTACTGGTTTCTCGTGTTGTTGGTGGTGATGGTGCAATCATTCTACACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACAGTTCCGGTGGAGCAAGTCCATGTATCACTATCTGGAAAACACCAAGATTCTGTTCTCTCGATCGCATCTGAAACCTTAAAATCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATACCTGTGACTTTAAAAGCTTGGCGAATTGTAGCAGCAGATGCTGATACTGCTGCCGGTAGGAGTGCCTCTAAGCACTCTAAGGATGGAAATAGCCCCACATTATTGATCCATTATGCAGGGACTGTGCCAAATACTGAAGATCCTTCTACAGATAAGTCTGTTGTCCCGCCTGGCAGACGCTTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCGATGGAGATTCCTGCCCAAGTAGGTTACAACCTTCCGACACCAGTTCATACTGATTATAGTCTTACTGAAGGAGCTGCGGGCACTCCAAATAAGTTGGACCAATTGGTGAAGATTGATCCTTTCAGAGGAAGCTGGGGACTTCGCTTTCTTGAACTTGAGTTGTCTAATCCCACTGATGTTGTTTTTGAAATTAGTGTTTCGGTCCAACTGGAGAACACTGATCATGAGCAGAGCCTCTCCGTTGATCAAGATGCTACTGAGTATGGTTACCCTAAAACAAGAATTGATCGGGATTGTTCTGCAAGGGTACTGATACCACTGGAGCATTTTAAGTTGCCTGTTCTTGATGATTCTTTTTTTGTGAAAGATAATCAAGCTGATGGGAGTGCCAGTGGCAGAAGTACTAGCTTTTCAGAAAGGAATACGAAAGCTGAACTTAATGCCTCTATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGTTCTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCATTAACATTTGGCTTCAGGCTTTCTAGAAGTGGCCCTGGACCTGAAAATATTGACTCCCATGAAAAATCCAATGATGAAGTTAACTCTTCTGCTTCTAAAGGTTCTGTGATGGCGCATGAAATGACCCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAGTTAATCAAGATGAGTCTTAATGTGGTGTGCAGGGATGTTGCTGGAGAGGATTGTGTAGAGTGTGCTAAGGCGACTGTCTTATGTTCTGGGGTTTTGAGTGGAATAACCGTGGAGATTCCACCGCTGGAAGAAATCAAGCATTCCTTCTCTTTGTATTTTCTCGTCCCCGGGGAGTACACACTAATAGCGGCTGCCATGATCGAAGATGCTACTGATATCCTCAGGGCTCGTGCAAGAACCACATCCTCTGATGAGCCAATCTTCTGTCATGGGCCTCCATATCATGTCCGGGTTGTTGGCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1199

Amino Acids

130.49

Weight (kDa)

5.87

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	9 - 184	9e-18	Trs120/TRAPPC9, N-terminal domain
TRAPPC9-Trs120	PF08626	202 - 272	1.2e-10	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	330 - 499	2.4e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	547 - 646	3e-20	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	884 - 1039	6.6e-12	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	1065 - 1195	7.8e-13	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AatII	GACGTC	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	1120
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	4 cut(s)	42, 87, 98, 354
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	3 cut(s)	439, 1810, 2142
AcuI	CTGAAG	7 cut(s)	1218, 1788, 1872, 2457, 2634, 3074, 3124
AcyI	GRCGYC	4 cut(s)	12, 228, 515, 581
AfaI	GTAC	8 cut(s)	1059, 1356, 2179, 2856, 2950, 3078, 3111, 3464
AfeI	AGCGCT	1 cut(s)	380
AfiI	CCNNNNNNNGG	8 cut(s)	46, 187, 243, 247, 317, 1306, 1957, 2672
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	9 cut(s)	211, 932, 949, 1070, 1223, 1774, 2041, 2699, 2735
AhdI	GACNNNNNGTC	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	7 cut(s)	185, 242, 1406, 1909, 2281, 2470, 3160
AjuI	GAANNNNNNNTTGG	2 cut(s)	2217, 2249
AleI	CACNNNNGTG	1 cut(s)	2136
AloI	GAACNNNNNNTCC	2 cut(s)	1713, 1745
Alw21I	GWGCWC	4 cut(s)	159, 655, 1340, 1486
Alw26I	GTCTC	2 cut(s)	1320, 1332
Alw44I	GTGCAC	2 cut(s)	651, 1482
AlwNI	CAGNNNCTG	5 cut(s)	1738, 1832, 2022, 2342, 2423
Ama87I	CYCGRG	1 cut(s)	3455
Aor51HI	AGCGCT	1 cut(s)	380
AoxI	GGCC	8 cut(s)	61, 814, 1471, 1646, 1895, 2279, 3157, 3560
ApaLI	GTGCAC	2 cut(s)	651, 1482
ApoI	RAATTY	3 cut(s)	439, 1810, 2142
Asp700I	GAANNNNTTC	3 cut(s)	887, 1728, 3046
AspLEI	GCGC	7 cut(s)	87, 230, 356, 381, 727, 1602, 3241
AspS9I	GGNCC	9 cut(s)	49, 814, 1646, 1895, 2644, 2749, 3158, 3164, 3560
AsuC2I	CCSGG	5 cut(s)	74, 1217, 3456, 3457, 3578
AsuHPI	GGTGA	6 cut(s)	170, 684, 909, 2123, 2150, 2665
AvaI	CYCGRG	1 cut(s)	3455
AvaII	GGWCC	4 cut(s)	49, 2644, 2749, 3164
AxyI	CCTNAGG	1 cut(s)	3509
BaeGI	GKGCMC	3 cut(s)	655, 1486, 2630
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	3517
BarI	GAAGNNNNNNTAC	2 cut(s)	2283, 2315
BauI	CACGAG	2 cut(s)	2097, 3516
BbsI	GAAGAC	2 cut(s)	665, 1623
Bbv12I	GWGCWC	4 cut(s)	159, 655, 1340, 1486
BceAI	ACGGC	5 cut(s)	119, 154, 263, 568, 815
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	7 cut(s)	187, 244, 1408, 1911, 2283, 2472, 3162
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	2 cut(s)	2767, 2791
BcnI	CCSGG	5 cut(s)	74, 1217, 3456, 3457, 3578
BcoDI	GTCTC	2 cut(s)	1320, 1332
BfaI	CTAG	7 cut(s)	738, 1125, 1479, 1611, 2952, 3012, 3150
BfmI	CTRYAG	2 cut(s)	2067, 2448
BfoI	RGCGCY	2 cut(s)	231, 382
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	1120
BfuI	GTATCC	1 cut(s)	817
BglI	GCCNNNNNGGC	1 cut(s)	1462
BmcAI	AGTACT	1 cut(s)	2950
Bme18I	GGWCC	4 cut(s)	49, 2644, 2749, 3164
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	3455
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	9 cut(s)	49, 814, 1646, 1895, 2644, 2749, 3158, 3164, 3560
BmiI	GGNNCC	5 cut(s)	6, 229, 322, 558, 1896
BmrI	ACTGGG	2 cut(s)	1132, 1653
BmuI	ACTGGG	2 cut(s)	1132, 1653
BoxI	GACNNNNGTC	1 cut(s)	572
BpiI	GAAGAC	2 cut(s)	665, 1623
BpmI	CTGGAG	7 cut(s)	768, 1650, 2304, 2777, 2888, 3072, 3351
Bpu10I	CCTNAGC	2 cut(s)	984, 3354
BpuEI	CTTGAG	4 cut(s)	579, 956, 2296, 2723
BpuMI	CCSGG	5 cut(s)	74, 1217, 3456, 3457, 3578
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	4 cut(s)	12, 228, 515, 581
BsaWI	WCCGGW	1 cut(s)	2185
BsaXI	ACNNNNNCTCC	8 cut(s)	775, 805, 1713, 1743, 2277, 2307, 2923, 2953
Bsc4I	CCNNNNNNNGG	8 cut(s)	46, 187, 243, 247, 317, 1306, 1957, 2672
Bse118I	RCCGGY	2 cut(s)	559, 2354
Bse21I	CCTNAGG	1 cut(s)	3509
Bse3DI	GCAATG	3 cut(s)	518, 1188, 1203
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	7 cut(s)	187, 244, 1408, 1911, 2283, 2472, 3162
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	8 cut(s)	46, 187, 243, 247, 317, 1306, 1957, 2672
BseMI	GCAATG	3 cut(s)	518, 1188, 1203
BseMII	CTCAG	7 cut(s)	422, 603, 920, 1272, 1343, 2796, 3523
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	3 cut(s)	655, 1486, 2630
BseYI	CCCAGC	2 cut(s)	1460, 2679
BsgI	GTGCAG	2 cut(s)	1434, 3337
Bsh1236I	CGCG	4 cut(s)	42, 87, 98, 354
Bsh1285I	CGRYCG	2 cut(s)	60, 2244
BshFI	GGCC	8 cut(s)	63, 816, 1473, 1648, 1897, 2281, 3159, 3562
BshNI	GGYRCC	1 cut(s)	227
BsiEI	CGRYCG	2 cut(s)	60, 2244
BsiHKAI	GWGCWC	4 cut(s)	159, 655, 1340, 1486
BsiHKCI	CYCGRG	1 cut(s)	3455
BsiSI	CCGG	9 cut(s)	8, 74, 195, 560, 1216, 2186, 2355, 3456, 3577
BslFI	GGGAC	8 cut(s)	53, 203, 580, 2039, 2434, 2450, 2697, 3437
BslI	CCNNNNNNNGG	8 cut(s)	46, 187, 243, 247, 317, 1306, 1957, 2672
BsmAI	GTCTC	2 cut(s)	1320, 1332
BsmFI	GGGAC	8 cut(s)	53, 203, 580, 2039, 2434, 2450, 2697, 3437
BsmI	GAATGC	1 cut(s)	3427
BsnI	GGCC	8 cut(s)	63, 816, 1473, 1648, 1897, 2281, 3159, 3562
BsoBI	CYCGRG	1 cut(s)	3455
Bsp1286I	GDGCHC	6 cut(s)	159, 655, 1340, 1486, 2630, 3517
Bsp1407I	TGTACA	1 cut(s)	3076
BspANI	GGCC	8 cut(s)	63, 816, 1473, 1648, 1897, 2281, 3159, 3562
BspCNI	CTCAG	7 cut(s)	421, 604, 919, 1273, 1342, 2797, 3522
BspFNI	CGCG	4 cut(s)	42, 87, 98, 354
BspHI	TCATGA	1 cut(s)	2770
BspLI	GGNNCC	5 cut(s)	6, 229, 322, 558, 1896
BspMI	ACCTGC	1 cut(s)	1120
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	518, 1188, 1203
BsrFI	RCCGGY	2 cut(s)	559, 2354
BsrGI	TGTACA	1 cut(s)	3076
BssAI	RCCGGY	2 cut(s)	559, 2354
BssNI	GRCGYC	4 cut(s)	12, 228, 515, 581
BssSI	CACGAG	2 cut(s)	2097, 3516
BssT1I	CCWWGG	1 cut(s)	1978
Bst2BI	CACGAG	2 cut(s)	2097, 3516
Bst2UI	CCWGG	7 cut(s)	187, 244, 1408, 1911, 2283, 2472, 3162
Bst4CI	ACNGT	6 cut(s)	1921, 2182, 2425, 3047, 3364, 3397
Bst6I	CTCTTC	1 cut(s)	3217
BstACI	GRCGYC	4 cut(s)	12, 228, 515, 581
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	2 cut(s)	1022, 2339
BstAUI	TGTACA	1 cut(s)	3076
BstC8I	GCNNGC	9 cut(s)	349, 459, 561, 651, 680, 684, 981, 1458, 2626
BstDSI	CCRYGG	2 cut(s)	831, 3396
BstEII	GGTNACC	1 cut(s)	2813
BstENI	CCTNNNNNAGG	2 cut(s)	1955, 2670
BstFNI	CGCG	4 cut(s)	42, 87, 98, 354
BstH2I	RGCGCY	2 cut(s)	231, 382
BstHHI	GCGC	7 cut(s)	87, 230, 356, 381, 727, 1602, 3241
BstMAI	GTCTC	2 cut(s)	1320, 1332
BstMCI	CGRYCG	2 cut(s)	60, 2244
BstNI	CCWGG	7 cut(s)	187, 244, 1408, 1911, 2283, 2472, 3162
BstNSI	RCATGY	1 cut(s)	682
BstPAI	GACNNNNGTC	1 cut(s)	572
BstPI	GGTNACC	1 cut(s)	2813
BstSFI	CTRYAG	2 cut(s)	2067, 2448
BstSLI	GKGCMC	3 cut(s)	655, 1486, 2630
BstUI	CGCG	4 cut(s)	42, 87, 98, 354
BstV2I	GAAGAC	2 cut(s)	665, 1623
BstX2I	RGATCY	2 cut(s)	1393, 2440
BstXI	CCANNNNNNTGG	1 cut(s)	1931
BstYI	RGATCY	2 cut(s)	1393, 2440
Bsu36I	CCTNAGG	1 cut(s)	3509
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	8 cut(s)	63, 816, 1473, 1648, 1897, 2281, 3159, 3562
BtgI	CCRYGG	2 cut(s)	831, 3396
BtgZI	GCGATG	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	67
BtsI	GCAGTG	3 cut(s)	295, 1924, 3588
BveI	ACCTGC	1 cut(s)	1120
Cac8I	GCNNGC	9 cut(s)	349, 459, 561, 651, 680, 684, 981, 1458, 2626
CaiI	CAGNNNCTG	5 cut(s)	1738, 1832, 2022, 2342, 2423
CciI	TCATGA	1 cut(s)	2770
CfoI	GCGC	7 cut(s)	87, 230, 356, 381, 727, 1602, 3241
Cfr10I	RCCGGY	2 cut(s)	559, 2354
Cfr13I	GGNCC	9 cut(s)	49, 814, 1646, 1895, 2644, 2749, 3158, 3164, 3560
Cfr9I	CCCGGG	1 cut(s)	3455
CseI	GACGC	4 cut(s)	481, 504, 589, 2487
Csp6I	GTAC	8 cut(s)	1058, 1355, 2178, 2855, 2949, 3077, 3110, 3463
CspCI	CAANNNNNGTGG	4 cut(s)	1872, 1907, 2707, 2742
CviQI	GTAC	8 cut(s)	1058, 1355, 2178, 2855, 2949, 3077, 3110, 3463
DinI	GGCGCC	1 cut(s)	229
DraI	TTTAAA	1 cut(s)	2313
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	3217
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	3217
EciI	GGCGGA	4 cut(s)	98, 121, 444, 569
Eco130I	CCWWGG	1 cut(s)	1978
Eco147I	AGGCCT	1 cut(s)	2281
Eco24I	GRGCYC	1 cut(s)	3517
Eco32I	GATATC	2 cut(s)	851, 3505
Eco47I	GGWCC	4 cut(s)	49, 2644, 2749, 3164
Eco47III	AGCGCT	1 cut(s)	380
Eco57I	CTGAAG	7 cut(s)	1218, 1788, 1872, 2457, 2634, 3074, 3124
Eco81I	CCTNAGG	1 cut(s)	3509
Eco88I	CYCGRG	1 cut(s)	3455
Eco91I	GGTNACC	1 cut(s)	2813
EcoNI	CCTNNNNNAGG	2 cut(s)	1955, 2670
EcoO65I	GGTNACC	1 cut(s)	2813
EcoRII	CCWGG	7 cut(s)	185, 242, 1406, 1909, 2281, 2470, 3160
EcoRV	GATATC	2 cut(s)	851, 3505
EcoT14I	CCWWGG	1 cut(s)	1978
EcoT38I	GRGCYC	1 cut(s)	3517
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	1978
FalI	AAGNNNNNCTT	8 cut(s)	1216, 1248, 1236, 1268, 2967, 2999, 3416, 3448
FaqI	GGGAC	8 cut(s)	53, 203, 580, 2039, 2434, 2450, 2697, 3437
FauI	CCCGC	4 cut(s)	370, 406, 2475, 2617
FbaI	TGATCA	2 cut(s)	2767, 2791
FriOI	GRGCYC	1 cut(s)	3517
FspBI	CTAG	7 cut(s)	738, 1125, 1479, 1611, 2952, 3012, 3150
GlaI	GCGC	7 cut(s)	86, 229, 355, 380, 726, 1601, 3240
GsaI	CCCAGC	2 cut(s)	1464, 2683
GsuI	CTGGAG	7 cut(s)	768, 1650, 2304, 2777, 2888, 3072, 3351
HaeII	RGCGCY	2 cut(s)	231, 382
HaeIII	GGCC	8 cut(s)	63, 816, 1473, 1648, 1897, 2281, 3159, 3562
HapII	CCGG	9 cut(s)	8, 74, 195, 560, 1216, 2186, 2355, 3456, 3577
HgaI	GACGC	4 cut(s)	481, 504, 589, 2487
HhaI	GCGC	7 cut(s)	87, 230, 356, 381, 727, 1602, 3241
Hin1I	GRCGYC	4 cut(s)	12, 228, 515, 581
Hin6I	GCGC	7 cut(s)	85, 228, 354, 379, 725, 1600, 3239
HinP1I	GCGC	7 cut(s)	85, 228, 354, 379, 725, 1600, 3239
HincII	GTYRAC	3 cut(s)	744, 1966, 3208
HindII	GTYRAC	3 cut(s)	744, 1966, 3208
HindIII	AAGCTT	2 cut(s)	1230, 2316
HpaI	GTTAAC	1 cut(s)	3208
HpaII	CCGG	9 cut(s)	8, 74, 195, 560, 1216, 2186, 2355, 3456, 3577
HphI	GGTGA	6 cut(s)	170, 684, 909, 2123, 2150, 2665
Hpy166II	GTNNAC	7 cut(s)	653, 744, 1484, 1924, 1966, 3208, 3465
Hpy8I	GTNNAC	7 cut(s)	653, 744, 1484, 1924, 1966, 3208, 3465
Hpy99I	CGWCG	2 cut(s)	377, 475
HpyCH4III	ACNGT	6 cut(s)	1921, 2182, 2425, 3047, 3364, 3397
HpyCH4IV	ACGT	2 cut(s)	12, 66
HpySE526I	ACGT	2 cut(s)	12, 66
Hsp92I	GRCGYC	4 cut(s)	12, 228, 515, 581
HspAI	GCGC	7 cut(s)	85, 228, 354, 379, 725, 1600, 3239
KasI	GGCGCC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	559
KroNI	GCCGGC	1 cut(s)	561
Ksp22I	TGATCA	2 cut(s)	2767, 2791
KspAI	GTTAAC	1 cut(s)	3208
MaeI	CTAG	7 cut(s)	738, 1125, 1479, 1611, 2952, 3012, 3150
MaeII	ACGT	2 cut(s)	12, 66
MaeIII	GTNAC	7 cut(s)	1864, 1900, 2293, 2305, 2570, 2813, 3272
MfeI	CAATTG	1 cut(s)	2648
MflI	RGATCY	2 cut(s)	1393, 2440
MhlI	GDGCHC	6 cut(s)	159, 655, 1340, 1486, 2630, 3517
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	4 cut(s)	185, 1334, 3173, 3310
MmeI	TCCRAC	8 cut(s)	285, 393, 567, 1699, 1907, 2606, 2622, 2776
MroNI	GCCGGC	1 cut(s)	559
MroXI	GAANNNNTTC	3 cut(s)	887, 1728, 3046
MslI	CAYNNNNRTG	1 cut(s)	2136
MspA1I	CMGCKG	3 cut(s)	1499, 2080, 3412
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	9 cut(s)	8, 74, 195, 560, 1216, 2186, 2355, 3456, 3577
MunI	CAATTG	1 cut(s)	2648
Mva1269I	GAATGC	1 cut(s)	3427
MvaI	CCWGG	7 cut(s)	187, 244, 1408, 1911, 2283, 2472, 3162
MvnI	CGCG	4 cut(s)	42, 87, 98, 354
NaeI	GCCGGC	1 cut(s)	561
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	5 cut(s)	74, 1217, 3456, 3457, 3578
NgoMIV	GCCGGC	1 cut(s)	559
NlaIV	GGNNCC	5 cut(s)	6, 229, 322, 558, 1896
NmeAIII	GCCGAG	2 cut(s)	201, 297
NmuCI	GTSAC	4 cut(s)	1864, 1900, 2293, 2305
NspI	RCATGY	1 cut(s)	682
OliI	CACNNNNGTG	1 cut(s)	2136
PaeI	GCATGC	1 cut(s)	682
PagI	TCATGA	1 cut(s)	2770
PasI	CCCWGGG	2 cut(s)	186, 243
PceI	AGGCCT	1 cut(s)	2281
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	3427
PdiI	GCCGGC	1 cut(s)	561
PdmI	GAANNNNTTC	3 cut(s)	887, 1728, 3046
PfeI	GAWTC	9 cut(s)	404, 590, 1247, 1735, 1879, 2228, 2554, 2897, 3403
PflFI	GACNNNGTC	1 cut(s)	1592
Ple19I	CGATCG	2 cut(s)	60, 2244
PleI	GAGTC	4 cut(s)	185, 1333, 3173, 3309
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	4 cut(s)	185, 1333, 3173, 3309
PshAI	GACNNNNGTC	1 cut(s)	572
PsiI	TTATAA	1 cut(s)	623
Psp6I	CCWGG	7 cut(s)	185, 242, 1406, 1909, 2281, 2470, 3160
PspEI	GGTNACC	1 cut(s)	2813
PspFI	CCCAGC	2 cut(s)	1460, 2679
PspGI	CCWGG	7 cut(s)	185, 242, 1406, 1909, 2281, 2470, 3160
PspN4I	GGNNCC	5 cut(s)	6, 229, 322, 558, 1896
PspPI	GGNCC	9 cut(s)	49, 814, 1646, 1895, 2644, 2749, 3158, 3164, 3560
PstNI	CAGNNNCTG	5 cut(s)	1738, 1832, 2022, 2342, 2423
PsuI	RGATCY	2 cut(s)	1393, 2440
PsyI	GACNNNGTC	1 cut(s)	1592
PvuI	CGATCG	2 cut(s)	60, 2244
RsaI	GTAC	8 cut(s)	1059, 1356, 2179, 2856, 2950, 3078, 3111, 3464
RsaNI	GTAC	8 cut(s)	1058, 1355, 2178, 2855, 2949, 3077, 3110, 3463
RseI	CAYNNNNRTG	1 cut(s)	2136
Sau96I	GGNCC	9 cut(s)	49, 814, 1646, 1895, 2644, 2749, 3158, 3164, 3560
ScaI	AGTACT	1 cut(s)	2950
SchI	GAGTC	4 cut(s)	185, 1334, 3173, 3310
SduI	GDGCHC	6 cut(s)	159, 655, 1340, 1486, 2630, 3517
SfcI	CTRYAG	2 cut(s)	2067, 2448
SfoI	GGCGCC	1 cut(s)	229
SinI	GGWCC	4 cut(s)	49, 2644, 2749, 3164
SmaI	CCCGGG	1 cut(s)	3457
SmiMI	CAYNNNNRTG	1 cut(s)	2136
SmlI	CTYRAG	5 cut(s)	548, 594, 935, 2275, 2702
SmoI	CTYRAG	5 cut(s)	548, 594, 935, 2275, 2702
SphI	GCATGC	1 cut(s)	682
SseBI	AGGCCT	1 cut(s)	2281
SspDI	GGCGCC	1 cut(s)	227
SspI	AATATT	1 cut(s)	3175
SspMI	CTAG	7 cut(s)	738, 1125, 1479, 1611, 2952, 3012, 3150
StuI	AGGCCT	1 cut(s)	2281
StyI	CCWWGG	1 cut(s)	1978
TaaI	ACNGT	6 cut(s)	1921, 2182, 2425, 3047, 3364, 3397
TaiI	ACGT	2 cut(s)	15, 69
TaqI	TCGA	7 cut(s)	21, 339, 375, 1779, 2240, 2546, 3489
TaqII	GACCGA	1 cut(s)	2737
TatI	WGTACW	6 cut(s)	1057, 1354, 2948, 3076, 3109, 3462
TauI	GCSGC	6 cut(s)	228, 354, 368, 515, 1764, 3479
TfiI	GAWTC	9 cut(s)	404, 590, 1247, 1735, 1879, 2228, 2554, 2897, 3403
TseFI	GTSAC	4 cut(s)	1864, 1900, 2293, 2305
Tsp45I	GTSAC	4 cut(s)	1864, 1900, 2293, 2305
TspDTI	ATGAA	8 cut(s)	701, 880, 1537, 1842, 2582, 3201, 3216, 3258
TspGWI	ACGGA	4 cut(s)	167, 313, 1786, 2776
TspMI	CCCGGG	1 cut(s)	3455
Tth111I	GACNNNGTC	1 cut(s)	1592
Vha464I	CTTAAG	1 cut(s)	548
VneI	GTGCAC	2 cut(s)	651, 1482
VpaK11BI	GGWCC	4 cut(s)	49, 2644, 2749, 3164
XagI	CCTNNNNNAGG	2 cut(s)	1955, 2670
XapI	RAATTY	3 cut(s)	439, 1810, 2142
XbaI	TCTAGA	2 cut(s)	3011, 3149
XceI	RCATGY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	3455
XmnI	GAANNNNTTC	3 cut(s)	887, 1728, 3046
XspI	CTAG	7 cut(s)	738, 1125, 1479, 1611, 2952, 3012, 3150
ZraI	GACGTC	1 cut(s)	13
ZrmI	AGTACT	1 cut(s)	2950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.