Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

58205261 .. 58212232

Gene Structure 6972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3066 bp

ATGGTACATGTGGGGTGTTTGTATGTGCAATTCTTTGTGTTAAATGTGTTCGGCTCTAAAATTAGTAATGCCTGGAAAAAAAAAATGCAGGTTATAAAGGCAAAGAAACGGAGGCTTGGGCGTGCACAGAAGACTATGGGTGATTATTGCTTGTTGGCAGGATCACCGGTTGATGCCAATCTTCATTACTCTACTGCATTAGAACTTGCTAGGTTGACCGGAGATTTTTTTTGGTATGCTGGTGCATTGGAGGGAAGCGTTTGTGCATTACTGATTGATCGAATGGGCCAAAAGGATACAGCTGTGGAAGAGGAAGTTAGATATCGGTATAGTAGTGTCATTTTGCACTACAGGAAGTCGTTCATACAAGAGAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTGGCAAGGTTTCTTTGCAGACGTGAGCTGGCTAAGGAGGTAGTGGAGCTACTAACAAATGCAGCAGATGGTGCGAAATCTCTGATTGATGCCAGTGATAGACTTGTACTTTATGTTGAAATAGCTCGTTTATATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTTTGGCAATGACCACAAAAGCATATCGTGTTCAAAGTAAAGCTTCAACCTTAGAAGATTCTCTTCCCAAAAAGGAAACTGGATCAAGTGTTGTTGAGGGTGGGAAAATGCTCCATCAGTCGGTAGTCTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCGTGGGGTGCAGCTGCAAGACTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAAATGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCATCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTGTATTCGTTTCCTCTCCATCCCTCACAAATGGACATTGTAAAGCGCAATCCTGCAAGAGAAGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTATACGCCATTCAGCAAGGGAGAGCCAAGCAATAACAGCAAACAGGAGCTGATTTGGATTGTTGGAGAACCAGTTCAGATTTTGGTGGAACTGGCAAACCCATGCGGCTTTGATTTGAGGGTCGATAGTATATATCTCTCTGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCACTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATCCCAACTTCAGTGGGGCCAGTGACAATTCCTGGTTGCACCGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTTTCTGACCCTTTCAGATGTTGTGGGTCTGCAAGGTTGAAAAATATATCTGTTCCAAGTATTTCTGTAGTACCGCCACTGCCATTACTGGTTTCACGTGTTGTTGGTGGTGATGGTGCAATCATTCTACACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACAGTTCCAGTTGAGCAAGTCCATGTATCGCTATCTGGAAAACACCAAGATTCTGTTCTCTTTATTGCATCTGAAACCTTAAAATCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATTCCTGTGACTTTAAAAGCTTGGCGAATTGTCTTAGCGGATGCAGATACTGCTGCTGGCAGGAGTGCCTTTAAGCACTCTAAGGATGGAAATAGCCCCACATTGTTGATCCATTATGCAGGGACCCTGCCAAATACTGGAGATCCTTCAACAGAAAAGTCTGTTGTCCCACCTGGCAGACGCCTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCGATGGAGATTCCTGCACAAGTAGGTGAAAACCTTCCGAAGCCAGTTCATATTGACAATAGTCTTACTGAAGGAGCTGTGGGCACTCCAAATAAGATGGACGGATTGGTGAAAATTGATCCTTTTAGAGGAAGCTGGGGACTACGCTTCCTTGAACTTGAGTTGTCTAATCCAACTGATGTTGTCTTTGAAATTAGTGTTTCAGTCCAACTGGAAAACACTGATCATGAGCATAGCCTCTCCGTTGATCGAGATGCTACCGAGTATGGTTACCCTAAAACAAGAATTGATCGAGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAATTGCCTGTTCTTGATGATTCTTTTTTTGTAAAAGATAATCAAGCTGATGGGAGTGGCAGAAGTTATAGCTTTTTAGAAAGGAATACGAAAGCTGAACTTAATGCCTCTATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGCTCTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCGTTAACATTTTGCTTCAGGCTTTCCAGAAATGGCCCTGGACCTGAAAATATTGATTCCCATGAAGAATTCAATTATCAAGTTGACTCTTCTGCTCCTAAAGGATCTGTGATGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAATTAATCAAGATGAGTCTTAACGTTGTGTGCAGAGATGTTGCGGGAGAGGATTGTGTAGAGTGTGCAAATGCAACTGTCTTATGTTCTGGTGTTTTGGGTGGGATAACCATGGAGGTTCCACCGCTTGAAGAAATCAAGCATTCTTTCTCTTTGTATTTTCTCGTCCCCGGGGAGTACACACTAATAGCGGCTGCCATGATCGAAGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACCAAATCCTCTGATGAGCCGATCTTCTGTCGTGGCCCTCCATATCATGTCCGGGTTGTTGGCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1021

Amino Acids

111.69

Weight (kDa)

6.86

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	29 - 92	1.5e-10	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	154 - 323	6.3e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	371 - 470	3.4e-20	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	708 - 861	1.2e-11	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	896 - 1017	2.6e-12	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AarI	CACCTGC	1 cut(s)	940
Acc36I	ACCTGC	3 cut(s)	79, 592, 940
AccB7I	CCANNNNNTGG	1 cut(s)	1910
AciI	CCGC	7 cut(s)	974, 1236, 1550, 1811, 2798, 2879, 2945
AclI	AACGTT	1 cut(s)	2778
AcsI	RAATTY	3 cut(s)	1285, 1617, 2660
AcuI	CTGAAG	5 cut(s)	1263, 1347, 2109, 2543, 2593
AcvI	CACGTG	1 cut(s)	1574
AcyI	GRCGYC	1 cut(s)	1954
AfaI	GTAC	9 cut(s)	6, 531, 831, 1548, 1654, 2331, 2547, 2580, 2933
AfiI	CCNNNNNNNGG	4 cut(s)	781, 1432, 1910, 2147
AflIII	ACRYGT	2 cut(s)	7, 1573
AgeI	ACCGGT	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	446
AjnI	CCWGG	6 cut(s)	71, 1384, 1756, 1945, 1956, 2629
AjuI	GAANNNNNNNTTGG	2 cut(s)	1692, 1724
AleI	CACNNNNGTG	1 cut(s)	1611
AloI	GAACNNNNNNTCC	2 cut(s)	1188, 1220
Alw21I	GWGCWC	3 cut(s)	127, 815, 961
Alw26I	GTCTC	2 cut(s)	793, 807
Alw44I	GTGCAC	2 cut(s)	123, 957
AlwNI	CAGNNNCTG	3 cut(s)	1180, 1307, 1823
Ama87I	CYCGRG	1 cut(s)	2924
AoxI	GGCC	7 cut(s)	286, 946, 1121, 1370, 1754, 2626, 3028
ApaLI	GTGCAC	2 cut(s)	123, 957
ApoI	RAATTY	3 cut(s)	1285, 1617, 2660
AseI	ATTAAT	1 cut(s)	2759
AsiGI	ACCGGT	1 cut(s)	166
Asp700I	GAANNNNTTC	3 cut(s)	359, 1203, 2052
AspLEI	GCGC	2 cut(s)	1077, 2710
AspS9I	GGNCC	7 cut(s)	286, 1121, 1370, 1896, 2627, 2633, 3029
AsuC2I	CCSGG	3 cut(s)	2925, 2926, 3047
AsuHPI	GGTGA	7 cut(s)	152, 156, 381, 1598, 1625, 2057, 2140
AvaI	CYCGRG	1 cut(s)	2924
AvaII	GGWCC	2 cut(s)	1896, 2633
AxyI	CCTNAGG	1 cut(s)	2978
BaeGI	GKGCMC	3 cut(s)	127, 961, 2105
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BamHI	GGATCC	1 cut(s)	1353
BanII	GRGCYC	1 cut(s)	2986
BauI	CACGAG	1 cut(s)	2985
BbrPI	CACGTG	1 cut(s)	1574
BbsI	GAAGAC	2 cut(s)	137, 1098
Bbv12I	GWGCWC	3 cut(s)	127, 815, 961
BciT130I	CCWGG	6 cut(s)	73, 1386, 1758, 1947, 1958, 2631
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	2242
BcnI	CCSGG	3 cut(s)	2925, 2926, 3047
BcoDI	GTCTC	2 cut(s)	793, 807
BfaI	CTAG	3 cut(s)	210, 954, 2481
BfmI	CTRYAG	2 cut(s)	349, 1542
BfuAI	ACCTGC	3 cut(s)	79, 592, 940
BfuI	GTATCC	1 cut(s)	289
Bme1390I	CCNGG	9 cut(s)	73, 1386, 1758, 1947, 1958, 2631, 2925, 2926, 3047
Bme18I	GGWCC	2 cut(s)	1896, 2633
BmeT110I	CYCGRG	1 cut(s)	2924
BmgBI	CACGTC	1 cut(s)	446
BmgT120I	GGNCC	7 cut(s)	286, 1121, 1370, 1896, 2627, 2633, 3029
BmiI	GGNNCC	5 cut(s)	1355, 1371, 1897, 1898, 2874
BmrFI	CCNGG	9 cut(s)	73, 1386, 1758, 1947, 1958, 2631, 2925, 2926, 3047
BmrI	ACTGGG	1 cut(s)	1128
BmsI	GCATC	8 cut(s)	163, 502, 1282, 1730, 1804, 2263, 2530, 2953
BmuI	ACTGGG	1 cut(s)	1128
BoxI	GACNNNNGTC	1 cut(s)	2079
BpiI	GAAGAC	2 cut(s)	137, 1098
BpmI	CTGGAG	5 cut(s)	1125, 1779, 1932, 2363, 2541
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	4 cut(s)	428, 580, 1771, 2198
BpuMI	CCSGG	3 cut(s)	2925, 2926, 3047
BsaAI	YACGTR	1 cut(s)	1574
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	1954
BsaJI	CCNNGG	6 cut(s)	1453, 2629, 2865, 2923, 2924, 2925
BsaWI	WCCGGW	2 cut(s)	166, 218
BsaXI	ACNNNNNCTCC	4 cut(s)	1188, 1218, 1752, 1782
Bsc4I	CCNNNNNNNGG	4 cut(s)	781, 1432, 1910, 2147
Bse118I	RCCGGY	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	2978
Bse3DI	GCAATG	2 cut(s)	660, 675
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	6 cut(s)	73, 1386, 1758, 1947, 1958, 2631
BseDI	CCNNGG	6 cut(s)	1453, 2629, 2865, 2923, 2924, 2925
BseGI	GGATG	6 cut(s)	1048, 1441, 1819, 1864, 2545, 2581
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	4 cut(s)	781, 1432, 1910, 2147
BseMI	GCAATG	2 cut(s)	660, 675
BseMII	CTCAG	4 cut(s)	392, 623, 818, 2992
BseSI	GKGCMC	3 cut(s)	127, 961, 2105
BseYI	CCCAGC	2 cut(s)	935, 2154
BsgI	GTGCAG	3 cut(s)	909, 2019, 2806
BshFI	GGCC	7 cut(s)	288, 948, 1123, 1372, 1756, 2628, 3030
BshTI	ACCGGT	1 cut(s)	166
BsiHKAI	GWGCWC	3 cut(s)	127, 815, 961
BsiHKCI	CYCGRG	1 cut(s)	2924
BsiSI	CCGG	4 cut(s)	167, 219, 2925, 3046
BslFI	GGGAC	4 cut(s)	1909, 1925, 2172, 2906
BslI	CCNNNNNNNGG	4 cut(s)	781, 1432, 1910, 2147
BsmAI	GTCTC	2 cut(s)	793, 807
BsmFI	GGGAC	4 cut(s)	1909, 1925, 2172, 2906
BsmI	GAATGC	2 cut(s)	379, 2896
BsnI	GGCC	7 cut(s)	288, 948, 1123, 1372, 1756, 2628, 3030
BsoBI	CYCGRG	1 cut(s)	2924
Bsp1286I	GDGCHC	5 cut(s)	127, 815, 961, 2105, 2986
Bsp1407I	TGTACA	1 cut(s)	2545
Bsp19I	CCATGG	1 cut(s)	2865
BspACI	CCGC	7 cut(s)	974, 1236, 1550, 1811, 2798, 2879, 2945
BspANI	GGCC	7 cut(s)	288, 948, 1123, 1372, 1756, 2628, 3030
BspCNI	CTCAG	4 cut(s)	391, 622, 817, 2991
BspHI	TCATGA	1 cut(s)	2245
BspLI	GGNNCC	5 cut(s)	1355, 1371, 1897, 1898, 2874
BspMI	ACCTGC	3 cut(s)	79, 592, 940
BsrDI	GCAATG	2 cut(s)	660, 675
BsrFI	RCCGGY	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	2545
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	6 cut(s)	1453, 2629, 2865, 2923, 2924, 2925
BssNI	GRCGYC	1 cut(s)	1954
BssSI	CACGAG	1 cut(s)	2985
BssT1I	CCWWGG	2 cut(s)	1453, 2865
Bst2BI	CACGAG	1 cut(s)	2985
Bst2UI	CCWGG	6 cut(s)	73, 1386, 1758, 1947, 1958, 2631
Bst4CI	ACNGT	4 cut(s)	1309, 1396, 1657, 2833
Bst6I	CTCTTC	3 cut(s)	303, 729, 2686
BstACI	GRCGYC	1 cut(s)	1954
BstAPI	GCANNNNNTGC	2 cut(s)	494, 1823
BstAUI	TGTACA	1 cut(s)	2545
BstBAI	YACGTR	1 cut(s)	1574
BstC8I	GCNNGC	3 cut(s)	123, 453, 1831
BstDSI	CCRYGG	1 cut(s)	2865
BstEII	GGTNACC	1 cut(s)	2288
BstENI	CCTNNNNNAGG	2 cut(s)	1430, 2145
BstF5I	GGATG	6 cut(s)	1048, 1441, 1819, 1864, 2545, 2581
BstHHI	GCGC	2 cut(s)	1077, 2710
BstMAI	GTCTC	2 cut(s)	793, 807
BstNI	CCWGG	6 cut(s)	73, 1386, 1758, 1947, 1958, 2631
BstNSI	RCATGY	1 cut(s)	11
BstPAI	GACNNNNGTC	1 cut(s)	2079
BstPI	GGTNACC	1 cut(s)	2288
BstSCI	CCNGG	9 cut(s)	71, 1384, 1756, 1945, 1956, 2629, 2923, 2924, 3045
BstSFI	CTRYAG	2 cut(s)	349, 1542
BstSLI	GKGCMC	3 cut(s)	127, 961, 2105
BstV2I	GAAGAC	2 cut(s)	137, 1098
BstX2I	RGATCY	4 cut(s)	868, 1353, 1915, 2696
BstXI	CCANNNNNNTGG	1 cut(s)	1406
BstYI	RGATCY	4 cut(s)	868, 1353, 1915, 2696
Bsu36I	CCTNAGG	1 cut(s)	2978
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	7 cut(s)	288, 948, 1123, 1372, 1756, 2628, 3030
BtgI	CCRYGG	1 cut(s)	2865
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	6 cut(s)	1048, 1441, 1819, 1864, 2545, 2581
BtsI	GCAGTG	3 cut(s)	1399, 1553, 3057
BveI	ACCTGC	3 cut(s)	79, 592, 940
Cac8I	GCNNGC	3 cut(s)	123, 453, 1831
CaiI	CAGNNNCTG	3 cut(s)	1180, 1307, 1823
CciI	TCATGA	1 cut(s)	2245
CfoI	GCGC	2 cut(s)	1077, 2710
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	7 cut(s)	286, 1121, 1370, 1896, 2627, 2633, 3029
Cfr9I	CCCGGG	1 cut(s)	2924
CseI	GACGC	1 cut(s)	1962
Csp6I	GTAC	9 cut(s)	5, 530, 830, 1547, 1653, 2330, 2546, 2579, 2932
CspAI	ACCGGT	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	1347, 1382
CviAII	CATG	9 cut(s)	8, 1233, 1676, 2246, 2654, 2711, 2866, 2953, 3041
CviQI	GTAC	9 cut(s)	5, 530, 830, 1547, 1653, 2330, 2546, 2579, 2932
DraI	TTTAAA	2 cut(s)	1788, 2353
Eam1104I	CTCTTC	3 cut(s)	303, 729, 2686
EarI	CTCTTC	3 cut(s)	303, 729, 2686
Eco130I	CCWWGG	2 cut(s)	1453, 2865
Eco147I	AGGCCT	1 cut(s)	1756
Eco24I	GRGCYC	1 cut(s)	2986
Eco32I	GATATC	2 cut(s)	323, 2974
Eco47I	GGWCC	2 cut(s)	1896, 2633
Eco57I	CTGAAG	5 cut(s)	1263, 1347, 2109, 2543, 2593
Eco72I	CACGTG	1 cut(s)	1574
Eco81I	CCTNAGG	1 cut(s)	2978
Eco88I	CYCGRG	1 cut(s)	2924
Eco91I	GGTNACC	1 cut(s)	2288
EcoNI	CCTNNNNNAGG	2 cut(s)	1430, 2145
EcoO109I	RGGNCCY	1 cut(s)	1896
EcoO65I	GGTNACC	1 cut(s)	2288
EcoRI	GAATTC	1 cut(s)	2660
EcoRII	CCWGG	6 cut(s)	71, 1384, 1756, 1945, 1956, 2629
EcoRV	GATATC	2 cut(s)	323, 2974
EcoT14I	CCWWGG	2 cut(s)	1453, 2865
EcoT38I	GRGCYC	1 cut(s)	2986
ErhI	CCWWGG	2 cut(s)	1453, 2865
FaeI	CATG	9 cut(s)	11, 1236, 1679, 2249, 2657, 2714, 2869, 2956, 3044
FalI	AAGNNNNNCTT	6 cut(s)	688, 720, 708, 740, 2436, 2468
FaqI	GGGAC	4 cut(s)	1909, 1925, 2172, 2906
FatI	CATG	9 cut(s)	7, 1232, 1675, 2245, 2653, 2710, 2865, 2952, 3040
FauI	CCCGC	1 cut(s)	2791
FbaI	TGATCA	1 cut(s)	2242
FokI	GGATG	6 cut(s)	1035, 1448, 1826, 1871, 2552, 2588
FriOI	GRGCYC	1 cut(s)	2986
FspBI	CTAG	3 cut(s)	210, 954, 2481
GlaI	GCGC	2 cut(s)	1076, 2709
GsaI	CCCAGC	2 cut(s)	939, 2158
GsuI	CTGGAG	5 cut(s)	1125, 1779, 1932, 2363, 2541
HaeIII	GGCC	7 cut(s)	288, 948, 1123, 1372, 1756, 2628, 3030
HapII	CCGG	4 cut(s)	167, 219, 2925, 3046
HgaI	GACGC	1 cut(s)	1962
HhaI	GCGC	2 cut(s)	1077, 2710
Hin1I	GRCGYC	1 cut(s)	1954
Hin1II	CATG	9 cut(s)	11, 1236, 1679, 2249, 2657, 2714, 2869, 2956, 3044
Hin6I	GCGC	2 cut(s)	1075, 2708
HinP1I	GCGC	2 cut(s)	1075, 2708
HincII	GTYRAC	4 cut(s)	216, 1441, 2598, 2677
HindII	GTYRAC	4 cut(s)	216, 1441, 2598, 2677
HindIII	AAGCTT	2 cut(s)	702, 1791
HinfI	GANTC	9 cut(s)	719, 800, 1703, 2029, 2372, 2648, 2678, 2719, 2770
HpaI	GTTAAC	1 cut(s)	2598
HpaII	CCGG	4 cut(s)	167, 219, 2925, 3046
HphI	GGTGA	7 cut(s)	152, 156, 381, 1598, 1625, 2057, 2140
Hpy166II	GTNNAC	8 cut(s)	125, 216, 959, 1399, 1441, 2598, 2677, 2934
Hpy8I	GTNNAC	8 cut(s)	125, 216, 959, 1399, 1441, 2598, 2677, 2934
HpyAV	CCTTC	7 cut(s)	1287, 1604, 1754, 1929, 2063, 2084, 2567
HpyCH4III	ACNGT	4 cut(s)	1309, 1396, 1657, 2833
HpyCH4IV	ACGT	3 cut(s)	445, 1573, 2778
HpySE526I	ACGT	3 cut(s)	445, 1573, 2778
Hsp92I	GRCGYC	1 cut(s)	1954
Hsp92II	CATG	9 cut(s)	11, 1236, 1679, 2249, 2657, 2714, 2869, 2956, 3044
HspAI	GCGC	2 cut(s)	1075, 2708
KflI	GGGWCCC	1 cut(s)	1896
Ksp22I	TGATCA	1 cut(s)	2242
KspAI	GTTAAC	1 cut(s)	2598
LweI	GCATC	8 cut(s)	163, 502, 1282, 1730, 1804, 2263, 2530, 2953
MaeI	CTAG	3 cut(s)	210, 954, 2481
MaeII	ACGT	3 cut(s)	445, 1573, 2778
MaeIII	GTNAC	7 cut(s)	1303, 1339, 1375, 1768, 1780, 2288, 2741
MflI	RGATCY	4 cut(s)	868, 1353, 1915, 2696
MhlI	GDGCHC	5 cut(s)	127, 815, 961, 2105, 2986
MlyI	GAGTC	4 cut(s)	809, 2672, 2713, 2779
MmeI	TCCRAC	3 cut(s)	1174, 2216, 2251
MroXI	GAANNNNTTC	3 cut(s)	359, 1203, 2052
MslI	CAYNNNNRTG	1 cut(s)	1611
MspA1I	CMGCKG	3 cut(s)	302, 893, 974
MspI	CCGG	4 cut(s)	167, 219, 2925, 3046
MspR9I	CCNGG	9 cut(s)	73, 1386, 1758, 1947, 1958, 2631, 2925, 2926, 3047
Mva1269I	GAATGC	2 cut(s)	379, 2896
MvaI	CCWGG	6 cut(s)	73, 1386, 1758, 1947, 1958, 2631
NciI	CCSGG	3 cut(s)	2925, 2926, 3047
NcoI	CCATGG	1 cut(s)	2865
NlaIII	CATG	9 cut(s)	11, 1236, 1679, 2249, 2657, 2714, 2869, 2956, 3044
NlaIV	GGNNCC	5 cut(s)	1355, 1371, 1897, 1898, 2874
NmuCI	GTSAC	5 cut(s)	1303, 1339, 1375, 1768, 1780
NspI	RCATGY	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	1611
PagI	TCATGA	1 cut(s)	2245
PaqCI	CACCTGC	1 cut(s)	940
PceI	AGGCCT	1 cut(s)	1756
PciI	ACATGT	1 cut(s)	7
PctI	GAATGC	2 cut(s)	379, 2896
PdmI	GAANNNNTTC	3 cut(s)	359, 1203, 2052
PfeI	GAWTC	5 cut(s)	719, 1703, 2029, 2372, 2648
PflMI	CCANNNNNTGG	1 cut(s)	1910
PinAI	ACCGGT	1 cut(s)	166
PleI	GAGTC	4 cut(s)	808, 2672, 2713, 2778
PmaCI	CACGTG	1 cut(s)	1574
PmlI	CACGTG	1 cut(s)	1574
PpsI	GAGTC	4 cut(s)	808, 2672, 2713, 2778
Ppu21I	YACGTR	1 cut(s)	1574
PpuMI	RGGWCCY	1 cut(s)	1896
PscI	ACATGT	1 cut(s)	7
PshAI	GACNNNNGTC	1 cut(s)	2079
PshBI	ATTAAT	1 cut(s)	2759
PsiI	TTATAA	1 cut(s)	95
Psp1406I	AACGTT	1 cut(s)	2778
Psp5II	RGGWCCY	1 cut(s)	1896
Psp6I	CCWGG	6 cut(s)	71, 1384, 1756, 1945, 1956, 2629
PspCI	CACGTG	1 cut(s)	1574
PspEI	GGTNACC	1 cut(s)	2288
PspFI	CCCAGC	2 cut(s)	935, 2154
PspGI	CCWGG	6 cut(s)	71, 1384, 1756, 1945, 1956, 2629
PspN4I	GGNNCC	5 cut(s)	1355, 1371, 1897, 1898, 2874
PspPI	GGNCC	7 cut(s)	286, 1121, 1370, 1896, 2627, 2633, 3029
PspPPI	RGGWCCY	1 cut(s)	1896
PstNI	CAGNNNCTG	3 cut(s)	1180, 1307, 1823
PsuI	RGATCY	4 cut(s)	868, 1353, 1915, 2696
PvuII	CAGCTG	2 cut(s)	302, 893
RsaI	GTAC	9 cut(s)	6, 531, 831, 1548, 1654, 2331, 2547, 2580, 2933
RsaNI	GTAC	9 cut(s)	5, 530, 830, 1547, 1653, 2330, 2546, 2579, 2932
RseI	CAYNNNNRTG	1 cut(s)	1611
Sau96I	GGNCC	7 cut(s)	286, 1121, 1370, 1896, 2627, 2633, 3029
SchI	GAGTC	4 cut(s)	809, 2672, 2713, 2779
ScrFI	CCNGG	9 cut(s)	73, 1386, 1758, 1947, 1958, 2631, 2925, 2926, 3047
SduI	GDGCHC	5 cut(s)	127, 815, 961, 2105, 2986
SfaNI	GCATC	8 cut(s)	163, 502, 1282, 1730, 1804, 2263, 2530, 2953
SfcI	CTRYAG	2 cut(s)	349, 1542
SinI	GGWCC	2 cut(s)	1896, 2633
SmaI	CCCGGG	1 cut(s)	2926
SmiMI	CAYNNNNRTG	1 cut(s)	1611
SmlI	CTYRAG	4 cut(s)	407, 595, 1750, 2177
SmoI	CTYRAG	4 cut(s)	407, 595, 1750, 2177
SseBI	AGGCCT	1 cut(s)	1756
SsiI	CCGC	7 cut(s)	974, 1236, 1550, 1811, 2798, 2879, 2945
SspI	AATATT	1 cut(s)	2644
SspMI	CTAG	3 cut(s)	210, 954, 2481
StuI	AGGCCT	1 cut(s)	1756
StyD4I	CCNGG	9 cut(s)	71, 1384, 1756, 1945, 1956, 2629, 2923, 2924, 3045
StyI	CCWWGG	2 cut(s)	1453, 2865
TaaI	ACNGT	4 cut(s)	1309, 1396, 1657, 2833
TaiI	ACGT	3 cut(s)	448, 1576, 2781
TaqI	TCGA	6 cut(s)	280, 1254, 2021, 2269, 2311, 2958
TatI	WGTACW	5 cut(s)	529, 829, 2545, 2578, 2931
TauI	GCSGC	2 cut(s)	1239, 2948
TfiI	GAWTC	5 cut(s)	719, 1703, 2029, 2372, 2648
TseFI	GTSAC	5 cut(s)	1303, 1339, 1375, 1768, 1780
Tsp45I	GTSAC	5 cut(s)	1303, 1339, 1375, 1768, 1780
TspDTI	ATGAA	7 cut(s)	173, 352, 1012, 1317, 2057, 2670, 2727
TspGWI	ACGGA	3 cut(s)	124, 2136, 2251
TspMI	CCCGGG	1 cut(s)	2924
Van91I	CCANNNNNTGG	1 cut(s)	1910
VneI	GTGCAC	2 cut(s)	123, 957
VpaK11BI	GGWCC	2 cut(s)	1896, 2633
VspI	ATTAAT	1 cut(s)	2759
XagI	CCTNNNNNAGG	2 cut(s)	1430, 2145
XapI	RAATTY	3 cut(s)	1285, 1617, 2660
XbaI	TCTAGA	1 cut(s)	2480
XceI	RCATGY	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	2924
XmnI	GAANNNNTTC	3 cut(s)	359, 1203, 2052
XspI	CTAG	3 cut(s)	210, 954, 2481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.