Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Forward (+)

57662424 .. 57668952

Gene Structure 6529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2931 bp

ATGGGTGATTATTGCTTGTTGGCAGGATCACCGGTTGATGCCAATCTTCATTACTCTACTGCATTGGAACTTGCTAGGTTGACCGGAGATTTTTTTTGGTATGCTGGTGCATTGGAGGGAAGCGTTTGTGCATTACTGATTGATCGAATGGGCCAAAAGGATACAGCCGTGGAAGAGGAAGTTAGATATCGGTATAGTAGTGTCATTTTGCACTACAGGAAGTCGTTCATACAAGAGAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTGGCAAGGTTTCTTTGCAGACGTGAGCTGGCTAAGGAGGTAGTGGAGCTACTAACAAATGCAGCAGATGGTGCGAAATCTCTGATTGATGCCAGTGATAGACTTGTACTTTATGTTGAAATAGCTCGTTTATATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTTTGGCAATGACCACAAAAGCATATCGTGTTCAAAGTAAAGCTTCAACCTTAGAAGATTCTCTTCCCAAAAAGGAAACTGGATCAAGTGTTGTTGAGGGTGGGAAAATGCTCCATCAGTCGGTAGTCTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCGTGGGGTGCAGCTGCAAGACTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAAATGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCATCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTGTATTCTTTTCCTCTCCATCCCTCACAAATGGACATTGTAAAGCGCAATCCTGCAAGAGAAGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTATACGCCATTCAGCAAGGGAGAGCCAAGCAATAACAGCAAACAGGAGCTGATTTGGATTGTTGGAGAACCAGTTCAGATTTTGGTGGAACTGGCAAACCCATGCGGCTTTGATTTGAGGGTCGATAGTATATATCTCTCTGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCACTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATCCCAACTTCAGTGGGGCCAGTGACAATTCCTGGTTGCACCGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTTTCTGACCCTTTCAGATGTTGTGGGTCTGCAAGGTTGAAAAATATATCTGTTCCAAGTATTTCTGTAGTACCGCCACTGCCATTACTGGTTTCACGTGTTGTTGGTGGTGATGGTGCAATCATTCTACACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACAGTTCCAGTTGAGCAAGTCCATGTATCACTATCTGGAAAACACCAAGATTCTGTTCTCTTTATTGCATCTGAAACCTTAAAATCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATTCCTGTGACTTTAAAAGCTTGGCGAATTGTCTTAGCGGATGCAGATACTGCTGCTGGCAGGAGTGCCTTTAAGCACTCTAAGGATGGAAATAGCCCCACATTGTTGATCCATTATGCTGGGACTCTGCCAAATACTGGAGATCCTTCAACAGAAAAGTCTGTTGTCCCACCTGGCAGACGCCTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCGATGGAGATTCCTGCACAAGTAGGTGAAAACCTTCCGAAGCCAGTTCATATTGACAATAGTCTTACTGAAGGAGCTGTGGGCACTCCAAATAAGATGGACAGATTGGTGAAAATTGATCCTTTTAGAGGAAGCTGGGGACTACGCTTCCTTGAACTTGAGTTGTCTAATCCAACTGATGTTGTCTTTGAAATTAGTGTTTCAGTCCAACTGGAGAACACTGATCATGAGCATAGCCTCTCCGTTGATCGAGATGCTACTGAGTATGGTTACCCTAAAACAAGAATTGATCGAGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAATTGCCTGTTCTTGATGATTCTTTTTTTGTAAAAGATAATCAAGCTGATGGGAGTGGCAGAAGTTATAGCTTTTCAGAAAGGAATACGAAAGCTGAACTTAATGCCTCTATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGCTCTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCATTAACATTTTGCTTCAGGCTTTCCAGAAATGGCCCTGGACCTGAAAATATTGATTCCCATGAAGAATCCAATGATCAAGTTGACTCTTCTGCTTCTAAAGGATCTGTGATGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAATTAATCAAGATGAGTCTTAACGTTGTGTGCAGAGATGTTGCGGGAGAGGATTGTGTAGAGTGTGCAAATGCAACTGTCTTATGTTCTGGTGTTTTGGGTGGGATAACCATGGAGGTTCCACCGCTTGAAGAAATCAAGCATTCTTTCTCTTTGTATTTTCTCGTTCCCGGGGAGTACACACTAATAGCGGCTGCCATGATCGAAGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACCAAATCCTCTGATGAGCCGATCTTCTGTCGTGGCCCTCCATATCATGTCCGGGTTGTTGGCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

976

Amino Acids

106.42

Weight (kDa)

5.9

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_TRAPPC9-Trs120	PF26251	109 - 278	7.8e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	326 - 425	3.2e-20	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	663 - 816	2.4e-12	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	845 - 972	3.2e-13	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	805
Acc36I	ACCTGC	2 cut(s)	457, 805
AccB7I	CCANNNNNTGG	1 cut(s)	1775
AciI	CCGC	7 cut(s)	839, 1101, 1415, 1676, 2663, 2744, 2810
AclI	AACGTT	1 cut(s)	2643
AcsI	RAATTY	2 cut(s)	1150, 1482
AcuI	CTGAAG	5 cut(s)	1128, 1212, 1974, 2408, 2458
AcvI	CACGTG	1 cut(s)	1439
AcyI	GRCGYC	1 cut(s)	1819
AfaI	GTAC	8 cut(s)	396, 696, 1413, 1519, 2196, 2412, 2445, 2798
AfiI	CCNNNNNNNGG	4 cut(s)	646, 1297, 1775, 2012
AflIII	ACRYGT	1 cut(s)	1438
AgeI	ACCGGT	1 cut(s)	31
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	5 cut(s)	1249, 1621, 1810, 1821, 2494
AjuI	GAANNNNNNNTTGG	2 cut(s)	1557, 1589
AleI	CACNNNNGTG	1 cut(s)	1476
AloI	GAACNNNNNNTCC	2 cut(s)	1053, 1085
Alw21I	GWGCWC	2 cut(s)	680, 826
Alw26I	GTCTC	2 cut(s)	658, 672
Alw44I	GTGCAC	1 cut(s)	822
AlwNI	CAGNNNCTG	3 cut(s)	1045, 1172, 1688
Ama87I	CYCGRG	1 cut(s)	2789
AoxI	GGCC	7 cut(s)	151, 811, 986, 1235, 1619, 2491, 2893
ApaLI	GTGCAC	1 cut(s)	822
ApoI	RAATTY	2 cut(s)	1150, 1482
AseI	ATTAAT	1 cut(s)	2624
AsiGI	ACCGGT	1 cut(s)	31
Asp700I	GAANNNNTTC	3 cut(s)	224, 1068, 1917
AspLEI	GCGC	2 cut(s)	942, 2575
AspS9I	GGNCC	6 cut(s)	151, 986, 1235, 2492, 2498, 2894
AsuC2I	CCSGG	3 cut(s)	2790, 2791, 2912
AsuHPI	GGTGA	7 cut(s)	17, 21, 246, 1463, 1490, 1922, 2005
AvaI	CYCGRG	1 cut(s)	2789
AvaII	GGWCC	1 cut(s)	2498
AxyI	CCTNAGG	1 cut(s)	2843
BaeGI	GKGCMC	2 cut(s)	826, 1970
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BamHI	GGATCC	1 cut(s)	1218
BanII	GRGCYC	1 cut(s)	2851
BauI	CACGAG	1 cut(s)	2850
BbrPI	CACGTG	1 cut(s)	1439
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	680, 826
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	5 cut(s)	1251, 1623, 1812, 1823, 2496
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	2 cut(s)	2107, 2533
BcnI	CCSGG	3 cut(s)	2790, 2791, 2912
BcoDI	GTCTC	2 cut(s)	658, 672
BfaI	CTAG	3 cut(s)	75, 819, 2346
BfmI	CTRYAG	2 cut(s)	214, 1407
BfuAI	ACCTGC	2 cut(s)	457, 805
BfuI	GTATCC	1 cut(s)	154
Bme1390I	CCNGG	8 cut(s)	1251, 1623, 1812, 1823, 2496, 2790, 2791, 2912
Bme18I	GGWCC	1 cut(s)	2498
BmeT110I	CYCGRG	1 cut(s)	2789
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	6 cut(s)	151, 986, 1235, 2492, 2498, 2894
BmiI	GGNNCC	3 cut(s)	1220, 1236, 2739
BmrFI	CCNGG	8 cut(s)	1251, 1623, 1812, 1823, 2496, 2790, 2791, 2912
BmrI	ACTGGG	1 cut(s)	993
BmsI	GCATC	8 cut(s)	28, 367, 1147, 1595, 1669, 2128, 2395, 2818
BmuI	ACTGGG	1 cut(s)	993
BoxI	GACNNNNGTC	1 cut(s)	1944
BpiI	GAAGAC	1 cut(s)	963
BpmI	CTGGAG	6 cut(s)	990, 1644, 1797, 2117, 2228, 2406
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	4 cut(s)	293, 445, 1636, 2063
BpuMI	CCSGG	3 cut(s)	2790, 2791, 2912
BsaAI	YACGTR	1 cut(s)	1439
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	1819
BsaJI	CCNNGG	6 cut(s)	168, 1318, 2494, 2730, 2789, 2790
BsaWI	WCCGGW	2 cut(s)	31, 83
BsaXI	ACNNNNNCTCC	4 cut(s)	1053, 1083, 1617, 1647
Bsc4I	CCNNNNNNNGG	4 cut(s)	646, 1297, 1775, 2012
Bse118I	RCCGGY	1 cut(s)	31
Bse21I	CCTNAGG	1 cut(s)	2843
Bse3DI	GCAATG	2 cut(s)	525, 540
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	5 cut(s)	1251, 1623, 1812, 1823, 2496
BseDI	CCNNGG	6 cut(s)	168, 1318, 2494, 2730, 2789, 2790
BseGI	GGATG	6 cut(s)	913, 1306, 1684, 1729, 2410, 2446
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	646, 1297, 1775, 2012
BseMI	GCAATG	2 cut(s)	525, 540
BseMII	CTCAG	5 cut(s)	257, 488, 683, 2136, 2857
BseSI	GKGCMC	2 cut(s)	826, 1970
BseYI	CCCAGC	3 cut(s)	800, 1757, 2019
BsgI	GTGCAG	3 cut(s)	774, 1884, 2671
BshFI	GGCC	7 cut(s)	153, 813, 988, 1237, 1621, 2493, 2895
BshTI	ACCGGT	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	680, 826
BsiHKCI	CYCGRG	1 cut(s)	2789
BsiSI	CCGG	4 cut(s)	32, 84, 2790, 2911
BslFI	GGGAC	3 cut(s)	1774, 1790, 2037
BslI	CCNNNNNNNGG	4 cut(s)	646, 1297, 1775, 2012
BsmAI	GTCTC	2 cut(s)	658, 672
BsmFI	GGGAC	3 cut(s)	1774, 1790, 2037
BsmI	GAATGC	2 cut(s)	244, 2761
BsnI	GGCC	7 cut(s)	153, 813, 988, 1237, 1621, 2493, 2895
BsoBI	CYCGRG	1 cut(s)	2789
Bsp1286I	GDGCHC	4 cut(s)	680, 826, 1970, 2851
Bsp1407I	TGTACA	1 cut(s)	2410
Bsp19I	CCATGG	1 cut(s)	2730
BspACI	CCGC	7 cut(s)	839, 1101, 1415, 1676, 2663, 2744, 2810
BspANI	GGCC	7 cut(s)	153, 813, 988, 1237, 1621, 2493, 2895
BspCNI	CTCAG	5 cut(s)	256, 487, 682, 2137, 2856
BspHI	TCATGA	1 cut(s)	2110
BspLI	GGNNCC	3 cut(s)	1220, 1236, 2739
BspMI	ACCTGC	2 cut(s)	457, 805
BsrDI	GCAATG	2 cut(s)	525, 540
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	2410
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	6 cut(s)	168, 1318, 2494, 2730, 2789, 2790
BssNI	GRCGYC	1 cut(s)	1819
BssSI	CACGAG	1 cut(s)	2850
BssT1I	CCWWGG	2 cut(s)	1318, 2730
Bst2BI	CACGAG	1 cut(s)	2850
Bst2UI	CCWGG	5 cut(s)	1251, 1623, 1812, 1823, 2496
Bst4CI	ACNGT	4 cut(s)	1174, 1261, 1522, 2698
Bst6I	CTCTTC	3 cut(s)	168, 594, 2551
BstACI	GRCGYC	1 cut(s)	1819
BstAPI	GCANNNNNTGC	2 cut(s)	359, 1688
BstAUI	TGTACA	1 cut(s)	2410
BstBAI	YACGTR	1 cut(s)	1439
BstC8I	GCNNGC	2 cut(s)	318, 1696
BstDSI	CCRYGG	2 cut(s)	168, 2730
BstEII	GGTNACC	1 cut(s)	2153
BstENI	CCTNNNNNAGG	2 cut(s)	1295, 2010
BstF5I	GGATG	6 cut(s)	913, 1306, 1684, 1729, 2410, 2446
BstHHI	GCGC	2 cut(s)	942, 2575
BstMAI	GTCTC	2 cut(s)	658, 672
BstNI	CCWGG	5 cut(s)	1251, 1623, 1812, 1823, 2496
BstPAI	GACNNNNGTC	1 cut(s)	1944
BstPI	GGTNACC	1 cut(s)	2153
BstSCI	CCNGG	8 cut(s)	1249, 1621, 1810, 1821, 2494, 2788, 2789, 2910
BstSFI	CTRYAG	2 cut(s)	214, 1407
BstSLI	GKGCMC	2 cut(s)	826, 1970
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	4 cut(s)	733, 1218, 1780, 2561
BstXI	CCANNNNNNTGG	2 cut(s)	1271, 1757
BstYI	RGATCY	4 cut(s)	733, 1218, 1780, 2561
Bsu36I	CCTNAGG	1 cut(s)	2843
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	7 cut(s)	153, 813, 988, 1237, 1621, 2493, 2895
BtgI	CCRYGG	2 cut(s)	168, 2730
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	6 cut(s)	913, 1306, 1684, 1729, 2410, 2446
BtsI	GCAGTG	3 cut(s)	1264, 1418, 2922
BveI	ACCTGC	2 cut(s)	457, 805
Cac8I	GCNNGC	2 cut(s)	318, 1696
CaiI	CAGNNNCTG	3 cut(s)	1045, 1172, 1688
CciI	TCATGA	1 cut(s)	2110
CfoI	GCGC	2 cut(s)	942, 2575
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	6 cut(s)	151, 986, 1235, 2492, 2498, 2894
Cfr9I	CCCGGG	1 cut(s)	2789
CseI	GACGC	1 cut(s)	1827
Csp6I	GTAC	8 cut(s)	395, 695, 1412, 1518, 2195, 2411, 2444, 2797
CspAI	ACCGGT	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	1212, 1247
CviAII	CATG	8 cut(s)	1098, 1541, 2111, 2519, 2576, 2731, 2818, 2906
CviQI	GTAC	8 cut(s)	395, 695, 1412, 1518, 2195, 2411, 2444, 2797
DraI	TTTAAA	2 cut(s)	1653, 2218
Eam1104I	CTCTTC	3 cut(s)	168, 594, 2551
EarI	CTCTTC	3 cut(s)	168, 594, 2551
Eco130I	CCWWGG	2 cut(s)	1318, 2730
Eco147I	AGGCCT	1 cut(s)	1621
Eco24I	GRGCYC	1 cut(s)	2851
Eco32I	GATATC	2 cut(s)	188, 2839
Eco47I	GGWCC	1 cut(s)	2498
Eco57I	CTGAAG	5 cut(s)	1128, 1212, 1974, 2408, 2458
Eco72I	CACGTG	1 cut(s)	1439
Eco81I	CCTNAGG	1 cut(s)	2843
Eco88I	CYCGRG	1 cut(s)	2789
Eco91I	GGTNACC	1 cut(s)	2153
EcoNI	CCTNNNNNAGG	2 cut(s)	1295, 2010
EcoO65I	GGTNACC	1 cut(s)	2153
EcoRII	CCWGG	5 cut(s)	1249, 1621, 1810, 1821, 2494
EcoRV	GATATC	2 cut(s)	188, 2839
EcoT14I	CCWWGG	2 cut(s)	1318, 2730
EcoT38I	GRGCYC	1 cut(s)	2851
ErhI	CCWWGG	2 cut(s)	1318, 2730
FaeI	CATG	8 cut(s)	1101, 1544, 2114, 2522, 2579, 2734, 2821, 2909
FalI	AAGNNNNNCTT	6 cut(s)	553, 585, 573, 605, 2301, 2333
FaqI	GGGAC	3 cut(s)	1774, 1790, 2037
FatI	CATG	8 cut(s)	1097, 1540, 2110, 2518, 2575, 2730, 2817, 2905
FauI	CCCGC	1 cut(s)	2656
FbaI	TGATCA	2 cut(s)	2107, 2533
FokI	GGATG	6 cut(s)	900, 1313, 1691, 1736, 2417, 2453
FriOI	GRGCYC	1 cut(s)	2851
FspBI	CTAG	3 cut(s)	75, 819, 2346
GlaI	GCGC	2 cut(s)	941, 2574
GsaI	CCCAGC	3 cut(s)	804, 1761, 2023
GsuI	CTGGAG	6 cut(s)	990, 1644, 1797, 2117, 2228, 2406
HaeIII	GGCC	7 cut(s)	153, 813, 988, 1237, 1621, 2493, 2895
HapII	CCGG	4 cut(s)	32, 84, 2790, 2911
HgaI	GACGC	1 cut(s)	1827
HhaI	GCGC	2 cut(s)	942, 2575
Hin1I	GRCGYC	1 cut(s)	1819
Hin1II	CATG	8 cut(s)	1101, 1544, 2114, 2522, 2579, 2734, 2821, 2909
Hin6I	GCGC	2 cut(s)	940, 2573
HinP1I	GCGC	2 cut(s)	940, 2573
HincII	GTYRAC	3 cut(s)	81, 1306, 2542
HindII	GTYRAC	3 cut(s)	81, 1306, 2542
HindIII	AAGCTT	2 cut(s)	567, 1656
HpaII	CCGG	4 cut(s)	32, 84, 2790, 2911
HphI	GGTGA	7 cut(s)	17, 21, 246, 1463, 1490, 1922, 2005
Hpy166II	GTNNAC	6 cut(s)	81, 824, 1264, 1306, 2542, 2799
Hpy8I	GTNNAC	6 cut(s)	81, 824, 1264, 1306, 2542, 2799
HpyAV	CCTTC	7 cut(s)	1152, 1469, 1619, 1794, 1928, 1949, 2432
HpyCH4III	ACNGT	4 cut(s)	1174, 1261, 1522, 2698
HpyCH4IV	ACGT	3 cut(s)	310, 1438, 2643
HpySE526I	ACGT	3 cut(s)	310, 1438, 2643
Hsp92I	GRCGYC	1 cut(s)	1819
Hsp92II	CATG	8 cut(s)	1101, 1544, 2114, 2522, 2579, 2734, 2821, 2909
HspAI	GCGC	2 cut(s)	940, 2573
Ksp22I	TGATCA	2 cut(s)	2107, 2533
LmnI	GCTCC	9 cut(s)	334, 642, 675, 971, 1042, 1322, 1625, 1958, 2209
LweI	GCATC	8 cut(s)	28, 367, 1147, 1595, 1669, 2128, 2395, 2818
MaeI	CTAG	3 cut(s)	75, 819, 2346
MaeII	ACGT	3 cut(s)	310, 1438, 2643
MaeIII	GTNAC	7 cut(s)	1168, 1204, 1240, 1633, 1645, 2153, 2606
MflI	RGATCY	4 cut(s)	733, 1218, 1780, 2561
MhlI	GDGCHC	4 cut(s)	680, 826, 1970, 2851
MlyI	GAGTC	5 cut(s)	674, 1756, 2537, 2578, 2644
MmeI	TCCRAC	3 cut(s)	1039, 2081, 2116
MroXI	GAANNNNTTC	3 cut(s)	224, 1068, 1917
MslI	CAYNNNNRTG	1 cut(s)	1476
MspA1I	CMGCKG	2 cut(s)	758, 839
MspI	CCGG	4 cut(s)	32, 84, 2790, 2911
MspR9I	CCNGG	8 cut(s)	1251, 1623, 1812, 1823, 2496, 2790, 2791, 2912
Mva1269I	GAATGC	2 cut(s)	244, 2761
MvaI	CCWGG	5 cut(s)	1251, 1623, 1812, 1823, 2496
NciI	CCSGG	3 cut(s)	2790, 2791, 2912
NcoI	CCATGG	1 cut(s)	2730
NlaIII	CATG	8 cut(s)	1101, 1544, 2114, 2522, 2579, 2734, 2821, 2909
NlaIV	GGNNCC	3 cut(s)	1220, 1236, 2739
NmuCI	GTSAC	5 cut(s)	1168, 1204, 1240, 1633, 1645
OliI	CACNNNNGTG	1 cut(s)	1476
PagI	TCATGA	1 cut(s)	2110
PaqCI	CACCTGC	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	1621
PctI	GAATGC	2 cut(s)	244, 2761
PdmI	GAANNNNTTC	3 cut(s)	224, 1068, 1917
PfeI	GAWTC	6 cut(s)	584, 1568, 1894, 2237, 2513, 2525
PflMI	CCANNNNNTGG	1 cut(s)	1775
PinAI	ACCGGT	1 cut(s)	31
PleI	GAGTC	5 cut(s)	673, 1756, 2537, 2578, 2643
PmaCI	CACGTG	1 cut(s)	1439
PmlI	CACGTG	1 cut(s)	1439
PpsI	GAGTC	5 cut(s)	673, 1756, 2537, 2578, 2643
Ppu21I	YACGTR	1 cut(s)	1439
PshAI	GACNNNNGTC	1 cut(s)	1944
PshBI	ATTAAT	1 cut(s)	2624
Psp1406I	AACGTT	1 cut(s)	2643
Psp6I	CCWGG	5 cut(s)	1249, 1621, 1810, 1821, 2494
PspCI	CACGTG	1 cut(s)	1439
PspEI	GGTNACC	1 cut(s)	2153
PspFI	CCCAGC	3 cut(s)	800, 1757, 2019
PspGI	CCWGG	5 cut(s)	1249, 1621, 1810, 1821, 2494
PspN4I	GGNNCC	3 cut(s)	1220, 1236, 2739
PspPI	GGNCC	6 cut(s)	151, 986, 1235, 2492, 2498, 2894
PstNI	CAGNNNCTG	3 cut(s)	1045, 1172, 1688
PsuI	RGATCY	4 cut(s)	733, 1218, 1780, 2561
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	8 cut(s)	396, 696, 1413, 1519, 2196, 2412, 2445, 2798
RsaNI	GTAC	8 cut(s)	395, 695, 1412, 1518, 2195, 2411, 2444, 2797
RseI	CAYNNNNRTG	1 cut(s)	1476
Sau96I	GGNCC	6 cut(s)	151, 986, 1235, 2492, 2498, 2894
SchI	GAGTC	5 cut(s)	674, 1756, 2537, 2578, 2644
ScrFI	CCNGG	8 cut(s)	1251, 1623, 1812, 1823, 2496, 2790, 2791, 2912
SduI	GDGCHC	4 cut(s)	680, 826, 1970, 2851
SfaNI	GCATC	8 cut(s)	28, 367, 1147, 1595, 1669, 2128, 2395, 2818
SfcI	CTRYAG	2 cut(s)	214, 1407
SinI	GGWCC	1 cut(s)	2498
SmaI	CCCGGG	1 cut(s)	2791
SmiMI	CAYNNNNRTG	1 cut(s)	1476
SmlI	CTYRAG	4 cut(s)	272, 460, 1615, 2042
SmoI	CTYRAG	4 cut(s)	272, 460, 1615, 2042
SseBI	AGGCCT	1 cut(s)	1621
SsiI	CCGC	7 cut(s)	839, 1101, 1415, 1676, 2663, 2744, 2810
SspI	AATATT	1 cut(s)	2509
SspMI	CTAG	3 cut(s)	75, 819, 2346
StuI	AGGCCT	1 cut(s)	1621
StyD4I	CCNGG	8 cut(s)	1249, 1621, 1810, 1821, 2494, 2788, 2789, 2910
StyI	CCWWGG	2 cut(s)	1318, 2730
TaaI	ACNGT	4 cut(s)	1174, 1261, 1522, 2698
TaiI	ACGT	3 cut(s)	313, 1441, 2646
TaqI	TCGA	6 cut(s)	145, 1119, 1886, 2134, 2176, 2823
TatI	WGTACW	5 cut(s)	394, 694, 2410, 2443, 2796
TauI	GCSGC	2 cut(s)	1104, 2813
TfiI	GAWTC	6 cut(s)	584, 1568, 1894, 2237, 2513, 2525
TseFI	GTSAC	5 cut(s)	1168, 1204, 1240, 1633, 1645
Tsp45I	GTSAC	5 cut(s)	1168, 1204, 1240, 1633, 1645
TspDTI	ATGAA	7 cut(s)	38, 217, 877, 1182, 1922, 2535, 2592
TspGWI	ACGGA	1 cut(s)	2116
TspMI	CCCGGG	1 cut(s)	2789
Van91I	CCANNNNNTGG	1 cut(s)	1775
VneI	GTGCAC	1 cut(s)	822
VpaK11BI	GGWCC	1 cut(s)	2498
VspI	ATTAAT	1 cut(s)	2624
XagI	CCTNNNNNAGG	2 cut(s)	1295, 2010
XapI	RAATTY	2 cut(s)	1150, 1482
XbaI	TCTAGA	1 cut(s)	2345
XmaI	CCCGGG	1 cut(s)	2789
XmnI	GAANNNNTTC	3 cut(s)	224, 1068, 1917
XspI	CTAG	3 cut(s)	75, 819, 2346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.