Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006329

Physical Location & Seq

Genomic Coordinates Reverse (-)

11080317 .. 11086131

Gene Structure 5815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011622

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3591 bp

ATGGAGCCGGACGTGAGCATCGAAACCAGCTCCATGATCCGCGTGGCGGTCCTCCCCATTGGCCACGTGCCGCCGGTCCTCCTGCGCGACTACCACTCCATGCTGCTCCGCCACCAGTCGATCCCTCTCTCAGCCGTCAGCTCCTTCTACACCGAGCACCAGAAGTCGCCCTTCGCTCACCAACCCTGGGACTCCGGCAGCCTCCGCTTCAAGTTCGTCCTCGGCGGCGCCCCTCCCAGCCCCTGGGAGGACTTCCAGTCCAACCGCAAAACCCTTGCCGTCATCGGAATCTGCCACTGCCCTTCCTCCCCGGATCTCGGCTCCGTCATGGATCAATTCGATTCCGCCTGTAGAGCCTACCCTGCCGCACTCGTCGAACGCTGCTTTGCCTTCTGCCCCGCCGATTCTCAGTTGGAGGATGGGAGTAAGAAAGGATGGAACCTGATGCTGTTCCCACCGGCGGATCGGGCCACACAGGAGTTTCACTTGCAAACGATGATGCAAGACATAGCCGCCTCATTGCTAATGGAGTTTGAGAAATGGGTGCTTAAGGCTGAGCCTGCGGGGACTATTGTCAAGACGCCTTTGGATTCTCAAGCTACTCTCAACTCAGAGGAGGTTATAAAGGCGAAGAAACGGAGGCTTGGGCGTGCACAGAAGACTATGGGTGATTATTGCTTGTTGGCAGGGTCACCGGTTGATGCCAATCTTCATTATTCTACTGCATTGGAACTTGCTAGGTTGACCGGAGATTTTTTTTGGTATGCTGGTGCATTGGAGGGAAGTGTTTGTGCATTACTGATTGATCGAATGGGCCAAAAGGATACAGCGGTGGAAGAGGAAGTTAGATATCGGTATACTAGTGTCATTTTGCACTACAGGAAGTCGTTCATACAAGAGAATGCTCAGAGAGTTTCACCCTTAACATTTGAACTTGAGGCTACTTTGAAATTGGCAAAGTTTCTTTGCAGACGTGAGCTGGCTAAGGAGGTAGTGGAGCTACTAACAAATGCAGCAGATGGTGCGAAATCTCTGATTGATGCCAGTGATAGACTTGTACTTTATGTTGAAATAGCTCGTTTATATGGAACTCTCGGTTATCAGCGAAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTATATTTGCAACAAGATAATAGACTGGCTGCCATTAGTGCAATGCAAGTTTTGGCAATGACCACAAAAGCATATCGTGTTCAAAGTAAAGCTTCAACCTTAGAAGATTCTCTTCCCAAAGAAACTGGATCAAGTGTTGTTGAGGGTGGGAAAATGCTCCATCAGTCAGTAGTCTCTCTATTTGAGTCTCAGTGGAGCACATTACAGATGGTTGTACTAAGGGAAATCCTGCTATCTGCTGTCCGAGCAGGAGATCCTCTTGCTGCGTGGGGTGCAGCTGCAAGACTACTAAGATCATATTATCCTTTAATTACACCTGCTGGGCAAAATGGCCTTGCTAGTGCACTTTCCAATTCAGCGGATCGGTTGCCATCAGGAACTCGCTGTGCTGACCCTGCCTTACCTTTCATTAGGTTGTATTCTTTTCCTCTCCATCCATCACAAATGGACATTGTAAAGCGCAATCCTGCAAGAGACGACTGGTGGGCTGGAGCTGCTAATACTGGGCCTTTTATTTATACGCCATTCAGCAAGGGAGAGCCAAGCAATAACAGCAAACAGGAGCTGATTTGGATTGTTGGAGAACCAGTTCAGATTTTGGTGGAACTGGCAAACCCATGCGGCTTTGATTTGAGGGTCGATAGTATATATCTCTCTGTGCCTTCAGGAAATTTTGATGCTTTTCCAGTCACTGTAAATCTTCCACCCAATTCATCAAAGGTGGTCACTTTATCAGGGATCCCAACTTCAGTGGGGCCAGTGACAATTCCTGGTTGCACTGTCCACTGCTTTGGTGTTATTACTGAACACCTGTTTAAGGATGTTGACAATCTACTCCTTGGAGCTACACAAGGACTTGTTCTTTCTGACCCTTTCAGATGCTGTGGGTCTGCAAGGTTGAAAAATATATCTGTTCCAAGTATTTCTGTAGTACCGCCACTGCCATTACTGGTTTCACGTGTTGTTGGTGGTGATGGTGCAATCATTCTACACGAAGGTGAAATTCGTGATATATGGATAAGTCTGGCTAATGCTGGTACAGTTCCAGTTGAGCAAGTCCATGTATCACTATCTGGAAAACACCAAGATTCTGTTCTCTTTATTGCATCTGAAACCTTAAAGTCTGCCCTTCCCTTGAGGCCTGGAGCAGAAGTGACAATTCCTGTGACTTTAAAAGCTTGGCGAATTGTCTTAGCGGATGCAGATACTGCTGCTGGCAGGAGTGCCTCTAAGCACTCTAAGGATGGAAATAGCCCCACATTGTTGGTCCATTATGCAGGGACTCTGCCAAATACTGGAGATCCTTCAACAGAAAAGTCTGTTGTCCCACCTGGCAGACGCCTGGTTGTTCCTTTGCAGATTTGTGTTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTCTGCTCTCAATGGAGATTCCTGCACAAGTAGGTGAAAACCTTCCGAAGCCAGTTCATATTGACAATAGTCTTACTGAAGGAGCTGTGGGCACTCCAAATAAGATGGACAGATTGGTGAAAATTGATCCTTTTAGAGGAAGCTGGGGACTACGCTTCCTTGAACTTGAGTTGTCTAATCCAACTGATGTTGTCTTTGAAATTAGTGTTTCAGTCCAACTGGAGAACACTGATCATGAGCATAGCCTCTCCGTTGATCGAGATGCTACTGAGTATGGTTACCCTAAAACAAGAATTGATCGAGATTGTTCTGCGAGGGTACTGATACCACTGGAGCATTTTAAATTGCCTGTTCTTGATGATTCTTTTTTTGTAAAAGATAATCAAGCTGATGGGAGTGGCAGAAGTTATAGCTTTTCAGAAAGGAATACGAAAGCTGAACTTAATGCCTCAATCAAGAACCTTATATCTAGAATAAAGGTTAGGTGGCAATCAGGGCGAAACAGCTCTGGAGAATTAAATATCAAGGATGCTGTACAGGCTGCCCTTCAGACATCTGTTATGGATGTACTGCTGCCAGACCCATTAACATTTTGCTTCAGGCTTTCCAGAAATGGCCCTGGACCTGAAAATATTGATTCCCATGAAGAGTCCAATGATCAAGTTGACTCTTCTGCTTCTAAAGGATCTGTGATGGCGCATGAAATGACTCCAATGGAAGTTATGGTTCGTAACAACACAAAGGAATTAATCAAGATGAGTCTTAACGTTTTGTGCAGAGATGTTGCGGGAGAGGATTGTGTAGAGTGTGTAAATGCAACTGTCTTATGCTCAGGTGTTTTGGGTGGGATAACCATGGAGGTTCCACCGCTTGAAGAAATCAAGCATTCTTTCTCTTTGTATTTTCTCGTCCCCGGGGAGTACACACTAATAGCAGCTGCCATGATCGAAGATGCTAATGATATCCTCAGGGCTCGTGCAAGAACCAAATCCTCTGATGAGCCGATCTTCTGTCGTGGCCCTCCGTATCATGTCCGGGTTGTTGGCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0007049 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0031984 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0097708 GO:0098791 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAPPC9-Trs120

Protein Analysis

1197

Amino Acids

130.8

Weight (kDa)

6.01

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAPPC9-Trs120	PF08626	9 - 184	5.4e-17	Trs120/TRAPPC9, N-terminal domain
TRAPPC9-Trs120	PF08626	203 - 268	1.1e-10	Trs120/TRAPPC9, N-terminal domain
TPR_TRAPPC9-Trs120	PF26251	330 - 498	8.2e-12	Trs120/TRAPPC9 TPR
Ig_TRAPPC9-Trs120_1st	PF26254	546 - 645	4.3e-20	Trs120/TRAPPC9, first Ig-like domain
Ig_TRAPPC9-Trs120_3rd	PF26282	883 - 1036	3.2e-12	Trs120/TRAPPC9, third Ig-like domain
Ig_TRAPPC9-Trs120_4th	PF26283	1065 - 1192	1.4e-13	Trs120/TRAPPC9, fourth Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11040
fragaria_vesca	FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290 FvH4_2g28290
malus_domestica	MD15G1131100.v1.1
prunus_persica	Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1 Prupe.1G486400_v2.0.a1
pyrus_communis	pycom08g13320 pycom15g11820
rosa_chinensis	RchiOBHm_Chr6g0297201
rosa_laevigata	RLG00000011622
rosa_multiflora	Rmu_sc0001574.1_g000007
rosa_roxburghii	Rroxscaffold_7G00170790
rosa_rugosa	Rorug06G0269800 Rorug06G0269900 Rorug06G0269900
rosa_samantha	Rh6AG380900 Rh6BG389000 Rh6CG394300 Rh6DG380900
rosa_wichuraiana	Rw6G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	1 cut(s)	1465
Acc36I	ACCTGC	2 cut(s)	1120, 1465
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	243, 2435
AccI	GTMKAC	1 cut(s)	857
AccII	CGCG	2 cut(s)	42, 87
AclI	AACGTT	1 cut(s)	3303
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	1810, 2142
AcuI	CTGAAG	5 cut(s)	1788, 1872, 2634, 3068, 3118
AcvI	CACGTG	2 cut(s)	67, 2099
AcyI	GRCGYC	3 cut(s)	228, 581, 2479
AfaI	GTAC	8 cut(s)	1059, 1356, 2073, 2179, 2856, 3072, 3105, 3458
AfiI	CCNNNNNNNGG	9 cut(s)	46, 187, 243, 247, 317, 460, 1957, 2435, 2672
AflII	CTTAAG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	2098
AgeI	ACCGGT	1 cut(s)	694
AhdI	GACNNNNNGTC	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	860
AjiI	CACGTC	2 cut(s)	13, 974
AjnI	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
AjuI	GAANNNNNNNTTGG	2 cut(s)	2217, 2249
AleI	CACNNNNGTG	1 cut(s)	2136
AloI	GAACNNNNNNTCC	2 cut(s)	1713, 1745
Alw21I	GWGCWC	4 cut(s)	159, 655, 1340, 1486
Alw26I	GTCTC	3 cut(s)	1318, 1332, 1608
Alw44I	GTGCAC	2 cut(s)	651, 1482
AlwNI	CAGNNNCTG	5 cut(s)	243, 1705, 1832, 2022, 2348
Ama87I	CYCGRG	1 cut(s)	3449
AoxI	GGCC	9 cut(s)	61, 468, 814, 1471, 1646, 1895, 2279, 3151, 3553
ApaLI	GTGCAC	2 cut(s)	651, 1482
ApoI	RAATTY	2 cut(s)	1810, 2142
AseI	ATTAAT	1 cut(s)	3284
AsiGI	ACCGGT	1 cut(s)	694
Asp700I	GAANNNNTTC	3 cut(s)	887, 1728, 2577
AspLEI	GCGC	4 cut(s)	87, 230, 1602, 3235
AsuC2I	CCSGG	4 cut(s)	311, 3450, 3451, 3572
AsuHPI	GGTGA	8 cut(s)	170, 680, 684, 909, 2123, 2150, 2582, 2665
AvaI	CYCGRG	1 cut(s)	3449
AvaII	GGWCC	4 cut(s)	49, 76, 2407, 3158
AxyI	CCTNAGG	1 cut(s)	3503
BaeGI	GKGCMC	3 cut(s)	655, 1486, 2630
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BalI	TGGCCA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	1878
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	3511
BauI	CACGAG	1 cut(s)	3510
BbrPI	CACGTG	2 cut(s)	67, 2099
BbsI	GAAGAC	1 cut(s)	665
Bbv12I	GWGCWC	4 cut(s)	159, 655, 1340, 1486
BceAI	ACGGC	2 cut(s)	119, 263
BciT130I	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	2 cut(s)	2767, 3193
BcnI	CCSGG	4 cut(s)	311, 3450, 3451, 3572
BcoDI	GTCTC	3 cut(s)	1318, 1332, 1608
BcuI	ACTAGT	1 cut(s)	860
BfaI	CTAG	4 cut(s)	738, 861, 1479, 3006
BfmI	CTRYAG	3 cut(s)	349, 877, 2067
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	2 cut(s)	1120, 1465
BfuI	GTATCC	1 cut(s)	817
BlpI	GCTNAGC	1 cut(s)	555
Bme18I	GGWCC	4 cut(s)	49, 76, 2407, 3158
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	3449
BmgBI	CACGTC	2 cut(s)	13, 974
BmiI	GGNNCC	7 cut(s)	6, 229, 322, 440, 1880, 1896, 3399
BmrI	ACTGGG	1 cut(s)	1653
BmuI	ACTGGG	1 cut(s)	1653
BoxI	GACNNNNGTC	2 cut(s)	572, 2604
BpiI	GAAGAC	1 cut(s)	665
BpmI	CTGGAG	6 cut(s)	1650, 2304, 2457, 2777, 2888, 3066
Bpu10I	CCTNAGC	2 cut(s)	984, 3367
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	5 cut(s)	579, 956, 1108, 2296, 2723
BpuMI	CCSGG	4 cut(s)	311, 3450, 3451, 3572
BsaAI	YACGTR	2 cut(s)	67, 2099
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	228, 581, 2479
BsaWI	WCCGGW	2 cut(s)	694, 746
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 1713, 1743, 2277, 2307
Bsc4I	CCNNNNNNNGG	9 cut(s)	46, 187, 243, 247, 317, 460, 1957, 2435, 2672
Bse118I	RCCGGY	3 cut(s)	73, 457, 694
Bse21I	CCTNAGG	1 cut(s)	3503
Bse3DI	GCAATG	3 cut(s)	518, 1188, 1203
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
BseGI	GGATG	8 cut(s)	424, 440, 1573, 1966, 2344, 2389, 3070, 3106
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	9 cut(s)	46, 187, 243, 247, 317, 460, 1957, 2435, 2672
BseMI	GCAATG	3 cut(s)	518, 1188, 1203
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	3 cut(s)	655, 1486, 2630
BseYI	CCCAGC	3 cut(s)	236, 1460, 2679
BsgI	GTGCAG	3 cut(s)	1434, 2544, 3331
Bsh1236I	CGCG	2 cut(s)	42, 87
BshFI	GGCC	9 cut(s)	63, 470, 816, 1473, 1648, 1897, 2281, 3153, 3555
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	694
BsiHKAI	GWGCWC	4 cut(s)	159, 655, 1340, 1486
BsiHKCI	CYCGRG	1 cut(s)	3449
BsiSI	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3450, 3571
BslFI	GGGAC	6 cut(s)	203, 580, 2434, 2450, 2697, 3431
BslI	CCNNNNNNNGG	9 cut(s)	46, 187, 243, 247, 317, 460, 1957, 2435, 2672
BsmAI	GTCTC	3 cut(s)	1318, 1332, 1608
BsmBI	CGTCTC	1 cut(s)	1608
BsmFI	GGGAC	6 cut(s)	203, 580, 2434, 2450, 2697, 3431
BsmI	GAATGC	2 cut(s)	907, 3421
BsnI	GGCC	9 cut(s)	63, 470, 816, 1473, 1648, 1897, 2281, 3153, 3555
BsoBI	CYCGRG	1 cut(s)	3449
Bsp1286I	GDGCHC	6 cut(s)	159, 655, 1340, 1486, 2630, 3511
Bsp1407I	TGTACA	1 cut(s)	3070
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	3390
BspANI	GGCC	9 cut(s)	63, 470, 816, 1473, 1648, 1897, 2281, 3153, 3555
BspFNI	CGCG	2 cut(s)	42, 87
BspHI	TCATGA	1 cut(s)	2770
BspLI	GGNNCC	7 cut(s)	6, 229, 322, 440, 1880, 1896, 3399
BspMI	ACCTGC	2 cut(s)	1120, 1465
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	518, 1188, 1203
BsrFI	RCCGGY	3 cut(s)	73, 457, 694
BsrGI	TGTACA	1 cut(s)	3070
BssAI	RCCGGY	3 cut(s)	73, 457, 694
BssNAI	GTATAC	1 cut(s)	858
BssNI	GRCGYC	3 cut(s)	228, 581, 2479
BssSI	CACGAG	1 cut(s)	3510
BssT1I	CCWWGG	2 cut(s)	1978, 3390
Bst1107I	GTATAC	1 cut(s)	858
Bst2BI	CACGAG	1 cut(s)	3510
Bst2UI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
Bst4CI	ACNGT	4 cut(s)	1834, 1921, 2182, 3358
Bst6I	CTCTTC	4 cut(s)	831, 1257, 3177, 3211
BstACI	GRCGYC	3 cut(s)	228, 581, 2479
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	2 cut(s)	1022, 2348
BstAUI	TGTACA	1 cut(s)	3070
BstBAI	YACGTR	2 cut(s)	67, 2099
BstC8I	GCNNGC	4 cut(s)	561, 651, 981, 2356
BstDSI	CCRYGG	1 cut(s)	3390
BstEII	GGTNACC	2 cut(s)	690, 2813
BstENI	CCTNNNNNAGG	2 cut(s)	1955, 2670
BstF5I	GGATG	8 cut(s)	424, 440, 1573, 1966, 2344, 2389, 3070, 3106
BstFNI	CGCG	2 cut(s)	42, 87
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	4 cut(s)	87, 230, 1602, 3235
BstMAI	GTCTC	3 cut(s)	1318, 1332, 1608
BstNI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
BstPAI	GACNNNNGTC	2 cut(s)	572, 2604
BstPI	GGTNACC	2 cut(s)	690, 2813
BstSFI	CTRYAG	3 cut(s)	349, 877, 2067
BstSLI	GKGCMC	3 cut(s)	655, 1486, 2630
BstUI	CGCG	2 cut(s)	42, 87
BstV2I	GAAGAC	1 cut(s)	665
BstX2I	RGATCY	5 cut(s)	313, 1393, 1878, 2440, 3221
BstXI	CCANNNNNNTGG	2 cut(s)	1931, 2404
BstYI	RGATCY	5 cut(s)	313, 1393, 1878, 2440, 3221
BstZ17I	GTATAC	1 cut(s)	858
Bsu36I	CCTNAGG	1 cut(s)	3503
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	9 cut(s)	63, 470, 816, 1473, 1648, 1897, 2281, 3153, 3555
BtgI	CCRYGG	1 cut(s)	3390
BtrI	CACGTC	2 cut(s)	13, 974
BtsCI	GGATG	8 cut(s)	424, 440, 1573, 1966, 2344, 2389, 3070, 3106
BtsI	GCAGTG	4 cut(s)	295, 1924, 2078, 3582
BveI	ACCTGC	2 cut(s)	1120, 1465
Cac8I	GCNNGC	4 cut(s)	561, 651, 981, 2356
CaiI	CAGNNNCTG	5 cut(s)	243, 1705, 1832, 2022, 2348
CciI	TCATGA	1 cut(s)	2770
CfoI	GCGC	4 cut(s)	87, 230, 1602, 3235
Cfr10I	RCCGGY	3 cut(s)	73, 457, 694
Cfr9I	CCCGGG	1 cut(s)	3449
CseI	GACGC	2 cut(s)	589, 2487
Csp6I	GTAC	8 cut(s)	1058, 1355, 2072, 2178, 2855, 3071, 3104, 3457
CspAI	ACCGGT	1 cut(s)	694
CspCI	CAANNNNNGTGG	2 cut(s)	1872, 1907
CviQI	GTAC	8 cut(s)	1058, 1355, 2072, 2178, 2855, 3071, 3104, 3457
DinI	GGCGCC	1 cut(s)	229
DraI	TTTAAA	2 cut(s)	2313, 2878
DriI	GACNNNNNGTC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	4 cut(s)	831, 1257, 3177, 3211
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	4 cut(s)	831, 1257, 3177, 3211
EciI	GGCGGA	3 cut(s)	98, 334, 476
Eco130I	CCWWGG	2 cut(s)	1978, 3390
Eco147I	AGGCCT	1 cut(s)	2281
Eco24I	GRGCYC	1 cut(s)	3511
Eco32I	GATATC	2 cut(s)	851, 3499
Eco47I	GGWCC	4 cut(s)	49, 76, 2407, 3158
Eco57I	CTGAAG	5 cut(s)	1788, 1872, 2634, 3068, 3118
Eco72I	CACGTG	2 cut(s)	67, 2099
Eco81I	CCTNAGG	1 cut(s)	3503
Eco88I	CYCGRG	1 cut(s)	3449
Eco91I	GGTNACC	2 cut(s)	690, 2813
EcoNI	CCTNNNNNAGG	2 cut(s)	1955, 2670
EcoO65I	GGTNACC	2 cut(s)	690, 2813
EcoRII	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
EcoRV	GATATC	2 cut(s)	851, 3499
EcoT14I	CCWWGG	2 cut(s)	1978, 3390
EcoT38I	GRGCYC	1 cut(s)	3511
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	2 cut(s)	1978, 3390
Esp3I	CGTCTC	1 cut(s)	1608
FalI	AAGNNNNNCTT	8 cut(s)	155, 187, 1216, 1248, 1236, 1268, 2961, 2993
FaqI	GGGAC	6 cut(s)	203, 580, 2434, 2450, 2697, 3431
FauI	CCCGC	3 cut(s)	406, 556, 3316
FbaI	TGATCA	2 cut(s)	2767, 3193
FblI	GTMKAC	1 cut(s)	857
FokI	GGATG	8 cut(s)	431, 447, 1560, 1973, 2351, 2396, 3077, 3113
FriOI	GRGCYC	1 cut(s)	3511
FspBI	CTAG	4 cut(s)	738, 861, 1479, 3006
GlaI	GCGC	4 cut(s)	86, 229, 1601, 3234
GsaI	CCCAGC	3 cut(s)	240, 1464, 2683
GsuI	CTGGAG	6 cut(s)	1650, 2304, 2457, 2777, 2888, 3066
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	9 cut(s)	63, 470, 816, 1473, 1648, 1897, 2281, 3153, 3555
HapII	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3450, 3571
HgaI	GACGC	2 cut(s)	589, 2487
HhaI	GCGC	4 cut(s)	87, 230, 1602, 3235
Hin1I	GRCGYC	3 cut(s)	228, 581, 2479
Hin6I	GCGC	4 cut(s)	85, 228, 1600, 3233
HinP1I	GCGC	4 cut(s)	85, 228, 1600, 3233
HincII	GTYRAC	3 cut(s)	744, 1966, 3202
HindII	GTYRAC	3 cut(s)	744, 1966, 3202
HindIII	AAGCTT	2 cut(s)	1230, 2316
HpaII	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3450, 3571
HphI	GGTGA	8 cut(s)	170, 680, 684, 909, 2123, 2150, 2582, 2665
Hpy166II	GTNNAC	8 cut(s)	653, 744, 858, 1484, 1924, 1966, 3202, 3459
Hpy8I	GTNNAC	8 cut(s)	653, 744, 858, 1484, 1924, 1966, 3202, 3459
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	4 cut(s)	1834, 1921, 2182, 3358
HpyCH4IV	ACGT	5 cut(s)	12, 66, 973, 2098, 3303
HpySE526I	ACGT	5 cut(s)	12, 66, 973, 2098, 3303
Hsp92I	GRCGYC	3 cut(s)	228, 581, 2479
HspAI	GCGC	4 cut(s)	85, 228, 1600, 3233
KasI	GGCGCC	1 cut(s)	227
Ksp22I	TGATCA	2 cut(s)	2767, 3193
MaeI	CTAG	4 cut(s)	738, 861, 1479, 3006
MaeII	ACGT	5 cut(s)	12, 66, 973, 2098, 3303
MaeIII	GTNAC	8 cut(s)	690, 1828, 1864, 1900, 2293, 2305, 2813, 3266
MflI	RGATCY	5 cut(s)	313, 1393, 1878, 2440, 3221
MhlI	GDGCHC	6 cut(s)	159, 655, 1340, 1486, 2630, 3511
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	7 cut(s)	185, 1334, 2416, 3194, 3197, 3238, 3304
MmeI	TCCRAC	5 cut(s)	285, 393, 1699, 2741, 2776
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	3 cut(s)	887, 1728, 2577
MscI	TGGCCA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	2136
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	4 cut(s)	830, 1418, 1499, 3473
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	9 cut(s)	8, 74, 195, 311, 458, 695, 747, 3450, 3571
Mva1269I	GAATGC	2 cut(s)	907, 3421
MvaI	CCWGG	7 cut(s)	187, 244, 1911, 2283, 2472, 2483, 3156
MvnI	CGCG	2 cut(s)	42, 87
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	4 cut(s)	311, 3450, 3451, 3572
NcoI	CCATGG	1 cut(s)	3390
NlaIV	GGNNCC	7 cut(s)	6, 229, 322, 440, 1880, 1896, 3399
NmeAIII	GCCGAG	2 cut(s)	201, 297
NmuCI	GTSAC	6 cut(s)	690, 1828, 1864, 1900, 2293, 2305
OliI	CACNNNNGTG	1 cut(s)	2136
PagI	TCATGA	1 cut(s)	2770
PaqCI	CACCTGC	1 cut(s)	1465
PasI	CCCWGGG	2 cut(s)	186, 243
PceI	AGGCCT	1 cut(s)	2281
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	2 cut(s)	907, 3421
PdmI	GAANNNNTTC	3 cut(s)	887, 1728, 2577
PfeI	GAWTC	9 cut(s)	288, 341, 404, 590, 1247, 2228, 2554, 2897, 3173
PflMI	CCANNNNNTGG	2 cut(s)	243, 2435
PinAI	ACCGGT	1 cut(s)	694
PleI	GAGTC	7 cut(s)	185, 1333, 2416, 3193, 3197, 3238, 3303
PluTI	GGCGCC	1 cut(s)	231
PmaCI	CACGTG	2 cut(s)	67, 2099
PmlI	CACGTG	2 cut(s)	67, 2099
PpsI	GAGTC	7 cut(s)	185, 1333, 2416, 3193, 3197, 3238, 3303
Ppu21I	YACGTR	2 cut(s)	67, 2099
PshAI	GACNNNNGTC	2 cut(s)	572, 2604
PshBI	ATTAAT	1 cut(s)	3284
PsiI	TTATAA	1 cut(s)	623
Psp1406I	AACGTT	1 cut(s)	3303
Psp6I	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
PspCI	CACGTG	2 cut(s)	67, 2099
PspEI	GGTNACC	2 cut(s)	690, 2813
PspFI	CCCAGC	3 cut(s)	236, 1460, 2679
PspGI	CCWGG	7 cut(s)	185, 242, 1909, 2281, 2470, 2481, 3154
PspN4I	GGNNCC	7 cut(s)	6, 229, 322, 440, 1880, 1896, 3399
PstNI	CAGNNNCTG	5 cut(s)	243, 1705, 1832, 2022, 2348
PsuI	RGATCY	5 cut(s)	313, 1393, 1878, 2440, 3221
PvuII	CAGCTG	2 cut(s)	1418, 3473
RsaI	GTAC	8 cut(s)	1059, 1356, 2073, 2179, 2856, 3072, 3105, 3458
RsaNI	GTAC	8 cut(s)	1058, 1355, 2072, 2178, 2855, 3071, 3104, 3457
RseI	CAYNNNNRTG	1 cut(s)	2136
SchI	GAGTC	7 cut(s)	185, 1334, 2416, 3194, 3197, 3238, 3304
SduI	GDGCHC	6 cut(s)	159, 655, 1340, 1486, 2630, 3511
SfcI	CTRYAG	3 cut(s)	349, 877, 2067
SfoI	GGCGCC	1 cut(s)	229
SgrAI	CRCCGGYG	1 cut(s)	457
SinI	GGWCC	4 cut(s)	49, 76, 2407, 3158
SmaI	CCCGGG	1 cut(s)	3451
SmiMI	CAYNNNNRTG	1 cut(s)	2136
SmlI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2275, 2702
SmoI	CTYRAG	6 cut(s)	548, 594, 935, 1123, 2275, 2702
SpeI	ACTAGT	1 cut(s)	860
SseBI	AGGCCT	1 cut(s)	2281
SspDI	GGCGCC	1 cut(s)	227
SspI	AATATT	1 cut(s)	3169
SspMI	CTAG	4 cut(s)	738, 861, 1479, 3006
StuI	AGGCCT	1 cut(s)	2281
StyI	CCWWGG	2 cut(s)	1978, 3390
TaaI	ACNGT	4 cut(s)	1834, 1921, 2182, 3358
TaiI	ACGT	5 cut(s)	15, 69, 976, 2101, 3306
TaqI	TCGA	9 cut(s)	21, 119, 339, 375, 808, 1779, 2794, 2836, 3483
TatI	WGTACW	5 cut(s)	1057, 1354, 3070, 3103, 3456
TauI	GCSGC	5 cut(s)	73, 228, 368, 515, 1764
TfiI	GAWTC	9 cut(s)	288, 341, 404, 590, 1247, 2228, 2554, 2897, 3173
TseFI	GTSAC	6 cut(s)	690, 1828, 1864, 1900, 2293, 2305
Tsp45I	GTSAC	6 cut(s)	690, 1828, 1864, 1900, 2293, 2305
TspDTI	ATGAA	7 cut(s)	701, 880, 1537, 1842, 2582, 3195, 3252
TspGWI	ACGGA	4 cut(s)	313, 652, 2776, 3549
TspMI	CCCGGG	1 cut(s)	3449
Van91I	CCANNNNNTGG	2 cut(s)	243, 2435
Vha464I	CTTAAG	1 cut(s)	548
VneI	GTGCAC	2 cut(s)	651, 1482
VpaK11BI	GGWCC	4 cut(s)	49, 76, 2407, 3158
VspI	ATTAAT	1 cut(s)	3284
XagI	CCTNNNNNAGG	2 cut(s)	1955, 2670
XapI	RAATTY	2 cut(s)	1810, 2142
XbaI	TCTAGA	1 cut(s)	3005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	3449
XmiI	GTMKAC	1 cut(s)	857
XmnI	GAANNNNTTC	3 cut(s)	887, 1728, 2577
XspI	CTAG	4 cut(s)	738, 861, 1479, 3006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.