Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Forward (+)

58224482 .. 58229417

Gene Structure 4936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG394400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGTACCACAACCACCTCTCTGGAGACTTACCTCTCCACCACTTCACAGACCAAGCCCAACAGCAGCAGCAACAGAGCCAGTCCTTCGTGACCGACCAACCCGACCCAAATTCCAAGTCCACGGAGCCCCACCACCACCCGTTTCAGACCGCTCCGAATTGGCTGAACAGCGCCCTCCTCCGCACCCAGTACGCCGCCACCACCTCCGGCGCAGACGCCAGCAACGCCGGAGGAGGAAGCACTAATTTTCTCAACCTCCACACGGCCTCCGACTCCACCGCCGCCTCTCAGGCCTCCAACCAATGGCTCTCCCGCCCGATCCTCCAGCGCAACCACAGCGACGTCATCGACGACGTCGCTGCCGGCGCCGGCGACTCCATGATGGCCGGCGCCATATCGCACGACTCCGCCGACATGAAAAACGACTCCGCCCTGAATAACAAGAGCGAGGGCGGAGTCGAGAGCGGCGGCGGAGGAGGAGGAGGCGACGGGGTCATCAACTGGCAGAATGCGAGGCACAAGGCGGAGATTCTAGCTCACCCGTTTTACGAGCCGCTTCTCTCGGCACACGTGGCATGCCTGAGGATCGCCACGCCGGTGGACCAGCTTCCGAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTGGCTAAGTACTCCGGTTTGAGTCACGGCATGGTCGCCGATGATAAGGAGCTTGATCAGTTCATGAGGCACTATGTTTTGTTGCTATGTTCTTTTAAAGAACAACTGCAACAACACGTCCGTGTCCATGCAATGGAAGCAGTGATGGCTTGCTGGGAGATTGAGCAATCACTACAGAGCCTGACAGGAGTTTCCCCCGGGGAGGGTACGGGAGCTACAATGTCCGATGATGATGATGAGCAAGTAGACAGTGATGCAAACTTGTTTGATGGAAGTATGGACGGCCATGACAGTATGGGATTTGGCCCTCTCATCCCGACAGAGAGCGAAAGGTCCTTGATGGAGCGCGTAAGGCAGGAGTTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAGATATTGCGCAAGAGAAGAGCTGGAAAGCTTCCTGGTGACACCACCTCTGTCCTGAAAGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACTGTAAGTTTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

392

Amino Acids

42.77

Weight (kDa)

5.34

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	175 - 215	1.1e-16	KNOX1 domain
KNOX2	PF03791	229 - 279	9.8e-19	KNOX2 domain
ELK	PF03789	337 - 358	6.6e-07	ELK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	348, 360
Acc16I	TGCGCA	1 cut(s)	1076
AccB1I	GGYRCC	2 cut(s)	368, 392
AccB7I	CCANNNNNTGG	2 cut(s)	306, 784
AccBSI	CCGCTC	2 cut(s)	155, 468
AccI	GTMKAC	2 cut(s)	897, 1053
AccII	CGCG	1 cut(s)	999
AclWI	GGATC	3 cut(s)	316, 596, 626
AcoI	YGGCCR	3 cut(s)	387, 934, 1151
AcsI	RAATTY	1 cut(s)	112
AcvI	CACGTG	1 cut(s)	574
AcyI	GRCGYC	5 cut(s)	219, 345, 357, 369, 393
AfaI	GTAC	4 cut(s)	8, 194, 662, 859
AfiI	CCNNNNNNNGG	5 cut(s)	265, 306, 784, 853, 854
AflIII	ACRYGT	2 cut(s)	571, 766
AgsI	TTSAA	1 cut(s)	1015
AjiI	CACGTC	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	1099
AleI	CACNNNNGTG	2 cut(s)	599, 771
AluBI	AGCT	8 cut(s)	539, 610, 631, 703, 866, 1088, 1096, 1127
AluI	AGCT	8 cut(s)	539, 610, 631, 703, 866, 1088, 1096, 1127
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	316, 596, 626
AlwNI	CAGNNNCTG	1 cut(s)	832
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	6 cut(s)	267, 294, 387, 934, 955, 1151
ApeKI	GCWGC	3 cut(s)	67, 70, 362
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	7 cut(s)	176, 215, 333, 371, 395, 999, 1077
AspS9I	GGNCC	3 cut(s)	604, 956, 984
AsuC2I	CCSGG	2 cut(s)	849, 850
AsuHPI	GGTGA	2 cut(s)	533, 1115
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	2 cut(s)	604, 984
AxyI	CCTNAGG	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	1153
BanI	GGYRCC	2 cut(s)	368, 392
BanII	GRGCYC	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	574
BbvI	GCAGC	3 cut(s)	79, 82, 349
BccI	CCATC	4 cut(s)	379, 790, 914, 985
BceAI	ACGGC	3 cut(s)	282, 694, 949
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	1101
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	2 cut(s)	849, 850
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	824
BfoI	RGCGCY	3 cut(s)	177, 372, 396
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	8 cut(s)	68, 71, 198, 285, 363, 469, 472, 557
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	8 cut(s)	69, 72, 199, 286, 364, 470, 473, 558
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	3 cut(s)	849, 850, 1101
Bme18I	GGWCC	2 cut(s)	604, 984
BmeT110I	CYCGRG	1 cut(s)	848
BmgBI	CACGTC	1 cut(s)	769
BmgT120I	GGNCC	3 cut(s)	604, 956, 984
BmiI	GGNNCC	3 cut(s)	129, 370, 394
BmrFI	CCNGG	3 cut(s)	849, 850, 1101
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	895
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	45, 311
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuMI	CCSGG	2 cut(s)	849, 850
BsaAI	YACGTR	1 cut(s)	574
BsaHI	GRCGYC	5 cut(s)	219, 345, 357, 369, 393
BsaJI	CCNNGG	5 cut(s)	123, 614, 847, 848, 849
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 306, 784, 853, 854
Bse118I	RCCGGY	4 cut(s)	365, 371, 389, 598
Bse1I	ACTGG	3 cut(s)	82, 190, 509
Bse21I	CCTNAGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	1 cut(s)	1101
BseDI	CCNNGG	5 cut(s)	123, 614, 847, 848, 849
BseGI	GGATG	1 cut(s)	963
BseLI	CCNNNNNNNGG	5 cut(s)	265, 306, 784, 853, 854
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	4 cut(s)	305, 575, 641, 650
BseNI	ACTGG	3 cut(s)	82, 190, 509
BseRI	GAGGAG	6 cut(s)	170, 249, 492, 495, 498, 1079
BseXI	GCAGC	3 cut(s)	79, 82, 349
BseYI	CCCAGC	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	999
BshFI	GGCC	6 cut(s)	269, 296, 389, 936, 957, 1153
BshNI	GGYRCC	2 cut(s)	368, 392
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	8 cut(s)	210, 231, 366, 372, 390, 599, 666, 849
BslI	CCNNNNNNNGG	5 cut(s)	265, 306, 784, 853, 854
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	6 cut(s)	269, 296, 389, 936, 957, 1153
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	321, 588, 618, 706
Bsp1720I	GCTNAGC	1 cut(s)	627
BspANI	GGCC	6 cut(s)	269, 296, 389, 936, 957, 1153
BspCNI	CTCAG	4 cut(s)	304, 576, 640, 649
BspFNI	CGCG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	3 cut(s)	129, 370, 394
BspPI	GGATC	3 cut(s)	316, 596, 626
BspQI	GCTCTTC	1 cut(s)	1078
BspT107I	GGYRCC	2 cut(s)	368, 392
BsrBI	CCGCTC	2 cut(s)	155, 468
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	4 cut(s)	365, 371, 389, 598
BsrI	ACTGG	3 cut(s)	82, 190, 509
BssAI	RCCGGY	4 cut(s)	365, 371, 389, 598
BssECI	CCNNGG	5 cut(s)	123, 614, 847, 848, 849
BssMI	GATC	4 cut(s)	321, 588, 618, 706
BssNI	GRCGYC	5 cut(s)	219, 345, 357, 369, 393
Bst2UI	CCWGG	1 cut(s)	1101
Bst4CI	ACNGT	3 cut(s)	902, 944, 1165
Bst6I	CTCTTC	1 cut(s)	1078
BstACI	GRCGYC	5 cut(s)	219, 345, 357, 369, 393
BstBAI	YACGTR	1 cut(s)	574
BstC8I	GCNNGC	7 cut(s)	223, 367, 373, 391, 580, 633, 802
BstDEI	CTNAG	5 cut(s)	291, 584, 627, 636, 657
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	963
BstFNI	CGCG	1 cut(s)	999
BstH2I	RGCGCY	3 cut(s)	177, 372, 396
BstHHI	GCGC	7 cut(s)	176, 215, 333, 371, 395, 999, 1077
BstKTI	GATC	4 cut(s)	324, 591, 621, 709
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	321, 588, 618, 706
BstMWI	GCNNNNNNNGC	9 cut(s)	227, 293, 339, 368, 575, 632, 788, 797, 1003
BstNI	CCWGG	1 cut(s)	1101
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	3 cut(s)	847, 848, 1099
BstSFI	CTRYAG	1 cut(s)	824
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	3 cut(s)	79, 82, 349
BstXI	CCANNNNNNTGG	2 cut(s)	23, 601
Bsu36I	CCTNAGG	1 cut(s)	584
BsuRI	GGCC	6 cut(s)	269, 296, 389, 936, 957, 1153
BtgI	CCRYGG	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	769
BtsCI	GGATG	1 cut(s)	963
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	2 cut(s)	798, 907
Cac8I	GCNNGC	7 cut(s)	223, 367, 373, 391, 580, 633, 802
CaiI	CAGNNNCTG	1 cut(s)	832
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	7 cut(s)	176, 215, 333, 371, 395, 999, 1077
Cfr10I	RCCGGY	4 cut(s)	365, 371, 389, 598
Cfr13I	GGNCC	3 cut(s)	604, 956, 984
Cfr9I	CCCGGG	1 cut(s)	848
CseI	GACGC	2 cut(s)	227, 632
Csp6I	GTAC	4 cut(s)	7, 193, 661, 858
CviAII	CATG	8 cut(s)	382, 418, 579, 682, 715, 779, 938, 1019
CviQI	GTAC	4 cut(s)	7, 193, 661, 858
DdeI	CTNAG	5 cut(s)	291, 584, 627, 636, 657
DinI	GGCGCC	2 cut(s)	370, 394
DpnI	GATC	4 cut(s)	323, 590, 620, 708
DpnII	GATC	4 cut(s)	321, 588, 618, 706
DraI	TTTAAA	1 cut(s)	748
EaeI	YGGCCR	3 cut(s)	387, 934, 1151
Eam1104I	CTCTTC	1 cut(s)	1078
EarI	CTCTTC	1 cut(s)	1078
EciI	GGCGGA	5 cut(s)	400, 421, 471, 489, 542
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	604, 984
Eco72I	CACGTG	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	984
EcoRII	CCWGG	1 cut(s)	1099
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	2 cut(s)	370, 394
EheI	GGCGCC	2 cut(s)	370, 394
FaeI	CATG	8 cut(s)	385, 421, 582, 685, 718, 782, 941, 1022
FatI	CATG	8 cut(s)	381, 417, 578, 681, 714, 778, 937, 1018
FauI	CCCGC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	706
FblI	GTMKAC	2 cut(s)	897, 1053
Fnu4HI	GCNGC	8 cut(s)	68, 71, 198, 285, 363, 469, 472, 557
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	8 cut(s)	68, 71, 198, 285, 363, 469, 472, 557
FspBI	CTAG	1 cut(s)	536
FspI	TGCGCA	1 cut(s)	1076
GlaI	GCGC	7 cut(s)	175, 214, 332, 370, 394, 998, 1076
GluI	GCNGC	8 cut(s)	68, 71, 198, 285, 363, 469, 472, 557
GsaI	CCCAGC	1 cut(s)	808
GsuI	CTGGAG	2 cut(s)	45, 311
HaeII	RGCGCY	3 cut(s)	177, 372, 396
HaeIII	GGCC	6 cut(s)	269, 296, 389, 936, 957, 1153
HapII	CCGG	8 cut(s)	210, 231, 366, 372, 390, 599, 666, 849
HgaI	GACGC	2 cut(s)	227, 632
HhaI	GCGC	7 cut(s)	176, 215, 333, 371, 395, 999, 1077
Hin1I	GRCGYC	5 cut(s)	219, 345, 357, 369, 393
Hin1II	CATG	8 cut(s)	385, 421, 582, 685, 718, 782, 941, 1022
Hin6I	GCGC	7 cut(s)	174, 213, 331, 369, 393, 997, 1075
HinP1I	GCGC	7 cut(s)	174, 213, 331, 369, 393, 997, 1075
HindIII	AAGCTT	2 cut(s)	1094, 1125
HinfI	GANTC	7 cut(s)	275, 377, 407, 428, 459, 532, 673
HpaII	CCGG	8 cut(s)	210, 231, 366, 372, 390, 599, 666, 849
HphI	GGTGA	2 cut(s)	533, 1115
Hpy166II	GTNNAC	4 cut(s)	123, 604, 898, 1054
Hpy188I	TCNGA	5 cut(s)	150, 159, 274, 615, 877
Hpy188III	TCNNGA	6 cut(s)	24, 91, 463, 715, 967, 1120
Hpy8I	GTNNAC	4 cut(s)	123, 604, 898, 1054
Hpy99I	CGWCG	6 cut(s)	347, 356, 359, 362, 494, 626
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	3 cut(s)	902, 944, 1165
HpyCH4IV	ACGT	4 cut(s)	345, 357, 573, 768
HpyCH4V	TGCA	3 cut(s)	760, 782, 908
HpyF10VI	GCNNNNNNNGC	9 cut(s)	227, 293, 339, 368, 575, 632, 788, 797, 1003
HpyF3I	CTNAG	5 cut(s)	291, 584, 627, 636, 657
HpySE526I	ACGT	4 cut(s)	345, 357, 573, 768
Hsp92I	GRCGYC	5 cut(s)	219, 345, 357, 369, 393
Hsp92II	CATG	8 cut(s)	385, 421, 582, 685, 718, 782, 941, 1022
HspAI	GCGC	7 cut(s)	174, 213, 331, 369, 393, 997, 1075
KasI	GGCGCC	2 cut(s)	368, 392
KroI	GCCGGC	3 cut(s)	365, 371, 389
KroNI	GCCGGC	3 cut(s)	367, 373, 391
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	4 cut(s)	321, 588, 618, 706
LguI	GCTCTTC	1 cut(s)	1078
LmnI	GCTCC	5 cut(s)	127, 160, 700, 863, 994
Lsp1109I	GCAGC	3 cut(s)	79, 82, 349
LweI	GCATC	1 cut(s)	895
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	4 cut(s)	345, 357, 573, 768
MaeIII	GTNAC	4 cut(s)	91, 674, 1034, 1103
MalI	GATC	4 cut(s)	323, 590, 620, 708
MbiI	CCGCTC	2 cut(s)	155, 468
MboI	GATC	4 cut(s)	321, 588, 618, 706
MboII	GAAGA	1 cut(s)	1095
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	1153
MluCI	AATT	4 cut(s)	112, 160, 247, 1047
MluNI	TGGCCA	1 cut(s)	1153
Mly113I	GGCGCC	2 cut(s)	369, 393
MlyI	GAGTC	6 cut(s)	269, 371, 401, 422, 468, 682
MmeI	TCCRAC	2 cut(s)	297, 324
Mox20I	TGGCCA	1 cut(s)	1153
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	3 cut(s)	365, 371, 389
MscI	TGGCCA	1 cut(s)	1153
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	2 cut(s)	599, 771
Msp20I	TGGCCA	1 cut(s)	1153
MspA1I	CMGCKG	1 cut(s)	631
MspI	CCGG	8 cut(s)	210, 231, 366, 372, 390, 599, 666, 849
MspR9I	CCNGG	3 cut(s)	849, 850, 1101
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	1101
MvnI	CGCG	1 cut(s)	999
MwoI	GCNNNNNNNGC	9 cut(s)	227, 293, 339, 368, 575, 632, 788, 797, 1003
NaeI	GCCGGC	3 cut(s)	367, 373, 391
NarI	GGCGCC	2 cut(s)	369, 393
NciI	CCSGG	2 cut(s)	849, 850
NdeII	GATC	4 cut(s)	321, 588, 618, 706
NgoMIV	GCCGGC	3 cut(s)	365, 371, 389
NlaIII	CATG	8 cut(s)	385, 421, 582, 685, 718, 782, 941, 1022
NlaIV	GGNNCC	3 cut(s)	129, 370, 394
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	3 cut(s)	91, 674, 1103
NsbI	TGCGCA	1 cut(s)	1076
NspI	RCATGY	1 cut(s)	582
OliI	CACNNNNGTG	2 cut(s)	599, 771
PaeI	GCATGC	1 cut(s)	582
PagI	TCATGA	1 cut(s)	714
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	1078
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 411
PctI	GAATGC	1 cut(s)	517
PdiI	GCCGGC	3 cut(s)	367, 373, 391
PfeI	GAWTC	1 cut(s)	532
PflFI	GACNNNGTC	2 cut(s)	356, 494
PflMI	CCANNNNNTGG	2 cut(s)	306, 784
PkrI	GCNGC	8 cut(s)	69, 72, 199, 286, 364, 470, 473, 558
PleI	GAGTC	6 cut(s)	269, 371, 401, 422, 467, 681
PluTI	GGCGCC	2 cut(s)	372, 396
PmaCI	CACGTG	1 cut(s)	574
PmlI	CACGTG	1 cut(s)	574
PpsI	GAGTC	6 cut(s)	269, 371, 401, 422, 467, 681
Ppu21I	YACGTR	1 cut(s)	574
PpuMI	RGGWCCY	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	984
Psp6I	CCWGG	1 cut(s)	1099
PspCI	CACGTG	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	1099
PspN4I	GGNNCC	3 cut(s)	129, 370, 394
PspPI	GGNCC	3 cut(s)	604, 956, 984
PspPPI	RGGWCCY	1 cut(s)	984
PstNI	CAGNNNCTG	1 cut(s)	832
PsyI	GACNNNGTC	2 cut(s)	356, 494
PvuII	CAGCTG	1 cut(s)	631
RsaI	GTAC	4 cut(s)	8, 194, 662, 859
RsaNI	GTAC	4 cut(s)	7, 193, 661, 858
RseI	CAYNNNNRTG	2 cut(s)	599, 771
SapI	GCTCTTC	1 cut(s)	1078
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	8 cut(s)	68, 71, 198, 285, 363, 469, 472, 557
Sau3AI	GATC	4 cut(s)	321, 588, 618, 706
Sau96I	GGNCC	3 cut(s)	604, 956, 984
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	6 cut(s)	269, 371, 401, 422, 468, 682
ScrFI	CCNGG	3 cut(s)	849, 850, 1101
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	895
SfcI	CTRYAG	1 cut(s)	824
SfoI	GGCGCC	2 cut(s)	370, 394
SgrAI	CRCCGGYG	2 cut(s)	371, 598
SinI	GGWCC	2 cut(s)	604, 984
SmaI	CCCGGG	1 cut(s)	850
SmiMI	CAYNNNNRTG	2 cut(s)	599, 771
SphI	GCATGC	1 cut(s)	582
Sse9I	AATT	4 cut(s)	112, 160, 247, 1047
SseBI	AGGCCT	1 cut(s)	296
SspDI	GGCGCC	2 cut(s)	368, 392
SspMI	CTAG	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	847, 848, 1099
TaaI	ACNGT	3 cut(s)	902, 944, 1165
TaiI	ACGT	4 cut(s)	348, 360, 576, 771
TaqI	TCGA	3 cut(s)	351, 462, 621
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	4 cut(s)	112, 160, 247, 1047
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	5 cut(s)	200, 287, 471, 474, 559
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	2 cut(s)	798, 907
TseFI	GTSAC	3 cut(s)	91, 674, 1103
TseI	GCWGC	3 cut(s)	67, 70, 362
Tsp45I	GTSAC	3 cut(s)	91, 674, 1103
TspDTI	ATGAA	3 cut(s)	434, 703, 1035
TspGWI	ACGGA	2 cut(s)	140, 761
TspMI	CCCGGG	1 cut(s)	848
TspRI	CASTG	2 cut(s)	798, 907
Tth111I	GACNNNGTC	2 cut(s)	356, 494
Van91I	CCANNNNNTGG	2 cut(s)	306, 784
VpaK11BI	GGWCC	2 cut(s)	604, 984
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	582
XmaI	CCCGGG	1 cut(s)	848
XmiI	GTMKAC	2 cut(s)	897, 1053
XspI	CTAG	1 cut(s)	536
ZraI	GACGTC	2 cut(s)	346, 358
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.