Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Reverse (-)

9443279 .. 9446537

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1130800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCGTACCACAACCACCTCTCCCAGGACCTCCCTCTCCACCACTTCACCGACCAAACCCAGCAACAGCACCAGCAATATCAATCGGACCAAACCGACCCGACTTCCAAGCCCCCCGAGCCCCACCATCCATTTCAGCCAGCCCCCAATTGGCTCAACTCCGCCCTCCTCCGCAACTTCACCAACGCCGACACCAACCCGACCAATAGCAACAACGCAAACAACAACGGCGGCGGTGCATCCAATTTCCTGAACCTCCACGTTACCGCCTCCGACTCCGCGGCCTCCCAAGCCTCCAACCAATGGCTCTCCCAGTCCCACCGTCCGATCCTCCACCGCAACCACAGCGACGTCATCGATGACGTCACCGTTGCCGGCGACTCGATGATCGCCGCGATGTCCCATGATTCCGCAGACCTCAAGCCCGACAGCAACCTCAACAAGAGCGAAGGCGGAGTCGTCGAGAGCGGCATCCCCGGCGGAGGCGGAGGAGGAGACGGCGGGGTGATGAACTGGCAGAACGCTAGACACAAAGCCGAAATTCTGGCGCACCCGCTGTACGAGCCGCTGCTGTCGGCACACGTAGCGTGCCTGCGGATCGCGACACCGGTGGACCAGCTGCCTAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTGGCGAAGTACTCCGCCTTGGGGAATGGCATGGTCGGCGATGACAAGGAGCTTGATCAGTTCATGAGGCATTATGTTTTGTTGCTTTGTTCGTTTAAAGAACAACTGCAACAACACGTCCGGGTGCATGCAATGGAAGCAGTGATGGCTTGCTGGGAGATTGAGCAATCACTTCAAAGCTTAACAGGAGTTTCCCCCGGCGAAGGAACAGGTGCTACAATGTCTGATGACGAAGACGACCAAGTAGATAGTGATGCAAACTTGTTTGATGGAAGTATGGAGGGTCATGACAGCATGGGATTTGGCCCTCTTATACCGACAGAGAGTGAAAGGTCCTTGATGGAGCGCGTGAGGCAAGAACTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATCGTTGACATAAGAGAGGAGATTATGCGCAAGAGAAGAGCCGGAAAACTTCCTGGCAACACCACCTCTGTCCTAAAAGCTTGGTGGCAATCACATTCGAAGTGGCCATATCCAACTGAGGAGGACAAGGCTAGGTTGGTACAGGAAACTGGTTTGCATTTAAAGCAGATAAACAACTGGTTCATCAATCAGCGGAAGAGGAACTGGCACAGCAATCCTTCAACCTCCACGGTTTTGAAGAGCAAGCGCAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

438

Amino Acids

48.66

Weight (kDa)

6.01

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	178 - 218	3.4e-17	KNOX1 domain
KNOX2	PF03791	232 - 282	2.8e-19	KNOX2 domain
ELK	PF03789	340 - 361	2.5e-07	ELK domain
Homeobox_KN	PF05920	380 - 419	1.2e-18	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	354, 366
Acc16I	TGCGCA	1 cut(s)	1085
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	468
AccII	CGCG	4 cut(s)	281, 395, 602, 1008
AclWI	GGATC	3 cut(s)	322, 605, 635
AcoI	YGGCCR	1 cut(s)	1160
AcsI	RAATTY	1 cut(s)	540
AcuI	CTGAAG	1 cut(s)	1043
AcyI	GRCGYC	2 cut(s)	351, 363
AfaI	GTAC	4 cut(s)	8, 560, 671, 1197
AfiI	CCNNNNNNNGG	6 cut(s)	25, 150, 303, 482, 681, 863
AflIII	ACRYGT	2 cut(s)	580, 775
AgeI	ACCGGT	1 cut(s)	607
AgsI	TTSAA	3 cut(s)	836, 1278, 1294
AjiI	CACGTC	1 cut(s)	778
AjnI	CCWGG	2 cut(s)	24, 1108
AluBI	AGCT	5 cut(s)	619, 640, 712, 840, 1136
AluI	AGCT	5 cut(s)	619, 640, 712, 840, 1136
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	322, 605, 635
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	282, 964, 1160
ApeKI	GCWGC	2 cut(s)	568, 619
ApoI	RAATTY	1 cut(s)	540
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AsiGI	ACCGGT	1 cut(s)	607
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	4 cut(s)	550, 1008, 1086, 1305
AspS9I	GGNCC	5 cut(s)	28, 88, 613, 965, 993
AsuC2I	CCSGG	3 cut(s)	477, 782, 858
AsuHPI	GGTGA	4 cut(s)	40, 172, 358, 517
AsuII	TTCGAA	1 cut(s)	1154
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	4 cut(s)	28, 88, 613, 993
AvrII	CCTAGG	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	1162
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	555, 606
BccI	CCATC	4 cut(s)	135, 799, 923, 994
BceAI	ACGGC	2 cut(s)	244, 514
BciT130I	CCWGG	2 cut(s)	26, 1110
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	3 cut(s)	477, 782, 858
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	3 cut(s)	525, 624, 1188
BisI	GCNGC	7 cut(s)	232, 282, 393, 469, 566, 569, 620
BlnI	CCTAGG	1 cut(s)	623
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	7 cut(s)	233, 283, 394, 470, 567, 570, 621
BmcAI	AGTACT	1 cut(s)	671
Bme1390I	CCNGG	5 cut(s)	26, 477, 782, 858, 1110
Bme18I	GGWCC	4 cut(s)	28, 88, 613, 993
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	778
BmgT120I	GGNCC	5 cut(s)	28, 88, 613, 965, 993
BmrFI	CCNGG	5 cut(s)	26, 477, 782, 858, 1110
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	3 cut(s)	248, 480, 904
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	900
Bpu1102I	GCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	1154
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	3 cut(s)	477, 782, 858
Bsa29I	ATCGAT	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	583
BsaHI	GRCGYC	2 cut(s)	351, 363
BsaJI	CCNNGG	7 cut(s)	24, 279, 475, 623, 678, 856, 1284
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 150, 303, 482, 681, 863
Bse118I	RCCGGY	2 cut(s)	374, 607
Bse1I	ACTGG	5 cut(s)	313, 518, 1210, 1238, 1265
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	26, 1110
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	7 cut(s)	24, 279, 475, 623, 678, 856, 1284
BseGI	GGATG	3 cut(s)	127, 239, 471
BseLI	CCNNNNNNNGG	6 cut(s)	25, 150, 303, 482, 681, 863
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	650, 659, 1164
BseNI	ACTGG	5 cut(s)	313, 518, 1210, 1238, 1265
BseRI	GAGGAG	5 cut(s)	158, 504, 507, 1088, 1190
BseXI	GCAGC	2 cut(s)	555, 606
BseYI	CCCAGC	2 cut(s)	60, 813
Bsh1236I	CGCG	4 cut(s)	281, 395, 602, 1008
BshFI	GGCC	3 cut(s)	284, 966, 1162
BshTI	ACCGGT	1 cut(s)	607
BshVI	ATCGAT	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	6 cut(s)	375, 477, 608, 781, 858, 1098
BslFI	GGGAC	2 cut(s)	301, 385
BslI	CCNNNNNNNGG	6 cut(s)	25, 150, 303, 482, 681, 863
BsmAI	GTCTC	1 cut(s)	489
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	2 cut(s)	301, 385
BsnI	GGCC	3 cut(s)	284, 966, 1162
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	1154
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	327, 387, 597, 627, 715
Bsp1720I	GCTNAGC	1 cut(s)	636
Bsp68I	TCGCGA	1 cut(s)	602
BspANI	GGCC	3 cut(s)	284, 966, 1162
BspCNI	CTCAG	3 cut(s)	649, 658, 1165
BspDI	ATCGAT	1 cut(s)	357
BspFNI	CGCG	4 cut(s)	281, 395, 602, 1008
BspHI	TCATGA	2 cut(s)	723, 946
BspPI	GGATC	3 cut(s)	322, 605, 635
BspQI	GCTCTTC	2 cut(s)	1087, 1289
BspT104I	TTCGAA	1 cut(s)	1154
BsrBI	CCGCTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	798
BsrFI	RCCGGY	2 cut(s)	374, 607
BsrI	ACTGG	5 cut(s)	313, 518, 1210, 1238, 1265
BssAI	RCCGGY	2 cut(s)	374, 607
BssECI	CCNNGG	7 cut(s)	24, 279, 475, 623, 678, 856, 1284
BssMI	GATC	5 cut(s)	327, 387, 597, 627, 715
BssNI	GRCGYC	2 cut(s)	351, 363
BssT1I	CCWWGG	2 cut(s)	623, 678
Bst2UI	CCWGG	2 cut(s)	26, 1110
Bst4CI	ACNGT	3 cut(s)	323, 370, 1288
Bst6I	CTCTTC	3 cut(s)	1087, 1247, 1289
BstACI	GRCGYC	2 cut(s)	351, 363
BstBAI	YACGTR	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	1154
BstC8I	GCNNGC	8 cut(s)	141, 376, 589, 593, 642, 789, 811, 1301
BstDEI	CTNAG	3 cut(s)	636, 645, 1173
BstDSI	CCRYGG	2 cut(s)	279, 1284
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	127, 239, 471
BstFNI	CGCG	4 cut(s)	281, 395, 602, 1008
BstHHI	GCGC	4 cut(s)	550, 1008, 1086, 1305
BstKTI	GATC	5 cut(s)	330, 390, 600, 630, 718
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	5 cut(s)	327, 387, 597, 627, 715
BstNI	CCWGG	2 cut(s)	26, 1110
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	5 cut(s)	24, 475, 780, 856, 1108
BstUI	CGCG	4 cut(s)	281, 395, 602, 1008
BstV1I	GCAGC	2 cut(s)	555, 606
BstV2I	GAAGAC	1 cut(s)	900
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	284, 966, 1162
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	2 cut(s)	279, 1284
BtgZI	GCGATG	2 cut(s)	410, 714
BtrI	CACGTC	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	127, 239, 471
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
BtuMI	TCGCGA	1 cut(s)	602
Cac8I	GCNNGC	8 cut(s)	141, 376, 589, 593, 642, 789, 811, 1301
CciI	TCATGA	2 cut(s)	723, 946
CfoI	GCGC	4 cut(s)	550, 1008, 1086, 1305
Cfr10I	RCCGGY	2 cut(s)	374, 607
Cfr13I	GGNCC	5 cut(s)	28, 88, 613, 965, 993
Cfr42I	CCGCGG	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	357
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	4 cut(s)	7, 559, 670, 1196
CspAI	ACCGGT	1 cut(s)	607
CviAII	CATG	7 cut(s)	404, 691, 724, 788, 947, 955, 1028
CviQI	GTAC	4 cut(s)	7, 559, 670, 1196
DdeI	CTNAG	3 cut(s)	636, 645, 1173
DpnI	GATC	5 cut(s)	329, 389, 599, 629, 717
DpnII	GATC	5 cut(s)	327, 387, 597, 627, 715
DraI	TTTAAA	2 cut(s)	757, 1218
EaeI	YGGCCR	1 cut(s)	1160
Eam1104I	CTCTTC	3 cut(s)	1087, 1247, 1289
EarI	CTCTTC	3 cut(s)	1087, 1247, 1289
EciI	GGCGGA	5 cut(s)	151, 468, 495, 501, 664
Eco130I	CCWWGG	2 cut(s)	623, 678
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	4 cut(s)	28, 88, 613, 993
Eco57I	CTGAAG	1 cut(s)	1043
Eco88I	CYCGRG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	2 cut(s)	28, 993
EcoRII	CCWGG	2 cut(s)	24, 1108
EcoT14I	CCWWGG	2 cut(s)	623, 678
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	623, 678
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	7 cut(s)	407, 694, 727, 791, 950, 958, 1031
FaqI	GGGAC	2 cut(s)	301, 385
FatI	CATG	7 cut(s)	403, 690, 723, 787, 946, 954, 1027
FauI	CCCGC	2 cut(s)	494, 561
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	7 cut(s)	232, 282, 393, 469, 566, 569, 620
FokI	GGATG	3 cut(s)	114, 226, 458
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	7 cut(s)	232, 282, 393, 469, 566, 569, 620
FspBI	CTAG	3 cut(s)	525, 624, 1188
FspI	TGCGCA	1 cut(s)	1085
GlaI	GCGC	4 cut(s)	549, 1007, 1085, 1304
GluI	GCNGC	7 cut(s)	232, 282, 393, 469, 566, 569, 620
GsaI	CCCAGC	2 cut(s)	64, 817
HaeIII	GGCC	3 cut(s)	284, 966, 1162
HapII	CCGG	6 cut(s)	375, 477, 608, 781, 858, 1098
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	4 cut(s)	550, 1008, 1086, 1305
Hin1I	GRCGYC	2 cut(s)	351, 363
Hin1II	CATG	7 cut(s)	407, 694, 727, 791, 950, 958, 1031
Hin6I	GCGC	4 cut(s)	548, 1006, 1084, 1303
HinP1I	GCGC	4 cut(s)	548, 1006, 1084, 1303
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HindIII	AAGCTT	2 cut(s)	838, 1134
HinfI	GANTC	4 cut(s)	275, 380, 407, 456
HpaII	CCGG	6 cut(s)	375, 477, 608, 781, 858, 1098
HphI	GGTGA	4 cut(s)	40, 172, 358, 517
Hpy166II	GTNNAC	2 cut(s)	613, 1063
Hpy188I	TCNGA	4 cut(s)	88, 274, 327, 886
Hpy188III	TCNNGA	5 cut(s)	250, 463, 601, 724, 947
Hpy8I	GTNNAC	2 cut(s)	613, 1063
Hpy99I	CGWCG	3 cut(s)	353, 464, 635
HpyAV	CCTTC	3 cut(s)	443, 857, 1284
HpyCH4III	ACNGT	3 cut(s)	323, 370, 1288
HpyCH4IV	ACGT	5 cut(s)	261, 351, 363, 582, 777
HpyCH4V	TGCA	6 cut(s)	239, 769, 787, 791, 917, 1213
HpyF3I	CTNAG	3 cut(s)	636, 645, 1173
HpySE526I	ACGT	5 cut(s)	261, 351, 363, 582, 777
Hsp92I	GRCGYC	2 cut(s)	351, 363
Hsp92II	CATG	7 cut(s)	407, 694, 727, 791, 950, 958, 1031
HspAI	GCGC	4 cut(s)	548, 1006, 1084, 1303
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	715
KspI	CCGCGG	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	327, 387, 597, 627, 715
LguI	GCTCTTC	2 cut(s)	1087, 1289
LmnI	GCTCC	2 cut(s)	709, 1003
Lsp1109I	GCAGC	2 cut(s)	555, 606
LweI	GCATC	3 cut(s)	248, 480, 904
MaeI	CTAG	3 cut(s)	525, 624, 1188
MaeII	ACGT	5 cut(s)	261, 351, 363, 582, 777
MaeIII	GTNAC	3 cut(s)	262, 364, 1043
MalI	GATC	5 cut(s)	329, 389, 599, 629, 717
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	5 cut(s)	327, 387, 597, 627, 715
MboII	GAAGA	4 cut(s)	905, 1104, 1264, 1306
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	1162
MluCI	AATT	3 cut(s)	148, 244, 540
MluNI	TGGCCA	1 cut(s)	1162
MlyI	GAGTC	3 cut(s)	269, 374, 465
MmeI	TCCRAC	3 cut(s)	297, 321, 1193
Mox20I	TGGCCA	1 cut(s)	1162
MroNI	GCCGGC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	1162
MseI	TTAA	3 cut(s)	756, 842, 1217
Msp20I	TGGCCA	1 cut(s)	1162
MspA1I	CMGCKG	6 cut(s)	281, 556, 568, 619, 640, 1249
MspI	CCGG	6 cut(s)	375, 477, 608, 781, 858, 1098
MspR9I	CCNGG	5 cut(s)	26, 477, 782, 858, 1110
MunI	CAATTG	1 cut(s)	148
MvaI	CCWGG	2 cut(s)	26, 1110
MvnI	CGCG	4 cut(s)	281, 395, 602, 1008
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	3 cut(s)	477, 782, 858
NdeII	GATC	5 cut(s)	327, 387, 597, 627, 715
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	7 cut(s)	407, 694, 727, 791, 950, 958, 1031
NmuCI	GTSAC	1 cut(s)	364
NruI	TCGCGA	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	1085
NspI	RCATGY	1 cut(s)	791
NspV	TTCGAA	1 cut(s)	1154
PaeI	GCATGC	1 cut(s)	791
PagI	TCATGA	2 cut(s)	723, 946
PciSI	GCTCTTC	2 cut(s)	1087, 1289
PdiI	GCCGGC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	303
PinAI	ACCGGT	1 cut(s)	607
PkrI	GCNGC	7 cut(s)	233, 283, 394, 470, 567, 570, 621
PleI	GAGTC	3 cut(s)	269, 374, 464
PpsI	GAGTC	3 cut(s)	269, 374, 464
Ppu21I	YACGTR	1 cut(s)	583
PpuMI	RGGWCCY	2 cut(s)	28, 993
Psp5II	RGGWCCY	2 cut(s)	28, 993
Psp6I	CCWGG	2 cut(s)	24, 1108
PspFI	CCCAGC	2 cut(s)	60, 813
PspGI	CCWGG	2 cut(s)	24, 1108
PspPI	GGNCC	5 cut(s)	28, 88, 613, 965, 993
PspPPI	RGGWCCY	2 cut(s)	28, 993
PsrI	GAACNNNNNNTAC	2 cut(s)	859, 891
PvuII	CAGCTG	2 cut(s)	619, 640
RruI	TCGCGA	1 cut(s)	602
RsaI	GTAC	4 cut(s)	8, 560, 671, 1197
RsaNI	GTAC	4 cut(s)	7, 559, 670, 1196
SacII	CCGCGG	1 cut(s)	282
SapI	GCTCTTC	2 cut(s)	1087, 1289
SaqAI	TTAA	3 cut(s)	756, 842, 1217
SatI	GCNGC	7 cut(s)	232, 282, 393, 469, 566, 569, 620
Sau3AI	GATC	5 cut(s)	327, 387, 597, 627, 715
Sau96I	GGNCC	5 cut(s)	28, 88, 613, 965, 993
ScaI	AGTACT	1 cut(s)	671
SchI	GAGTC	3 cut(s)	269, 374, 465
ScrFI	CCNGG	5 cut(s)	26, 477, 782, 858, 1110
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	3 cut(s)	248, 480, 904
Sfr303I	CCGCGG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	1154
SgrAI	CRCCGGYG	1 cut(s)	607
SgrBI	CCGCGG	1 cut(s)	282
SinI	GGWCC	4 cut(s)	28, 88, 613, 993
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	791
Sse9I	AATT	3 cut(s)	148, 244, 540
SspMI	CTAG	3 cut(s)	525, 624, 1188
StyD4I	CCNGG	5 cut(s)	24, 475, 780, 856, 1108
StyI	CCWWGG	2 cut(s)	623, 678
TaaI	ACNGT	3 cut(s)	323, 370, 1288
TaiI	ACGT	5 cut(s)	264, 354, 366, 585, 780
TaqI	TCGA	5 cut(s)	357, 383, 462, 630, 1154
TasI	AATT	3 cut(s)	148, 244, 540
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	5 cut(s)	234, 284, 395, 471, 568
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	756, 842, 1217
Tru9I	TTAA	3 cut(s)	756, 842, 1217
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	2 cut(s)	568, 619
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	524, 712, 1044, 1228
TspRI	CASTG	1 cut(s)	807
Van91I	CCANNNNNTGG	1 cut(s)	303
VpaK11BI	GGWCC	4 cut(s)	28, 88, 613, 993
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	540
XceI	RCATGY	1 cut(s)	791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XmaJI	CCTAGG	1 cut(s)	623
XspI	CTAG	3 cut(s)	525, 624, 1188
ZraI	GACGTC	2 cut(s)	352, 364
ZrmI	AGTACT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.