Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Reverse (-)

11061662 .. 11064498

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCGTACCACAACCACCTATCTGGAGACTTACCTCTCCACCACTTCACAGACCAAGCCCAACAGCAGCAGCAACAGAACCAGTCCTTCATGACCGACCAACCCGACCCAAATTCCAAGTCCACGGAGCCCCACCACAACCCGTTTCAGACCGCTCCGAATTGGCTGAACAGCGCCCTCCTCCGCACCCAGTACGCCGCCACCACCTCCGGCGCAGACGCCAGCAACGCCGGAGGAGGAGGAGGAGGAAGCACTAATTTCCTCAATCTCCACACGGCCTCCGACTCCACCGCCGCCTCTCAGGCCTCCAACCAATGGCTCTCCCGCCCGATCCTCCAGCGCAACCACAGCGACGTCATCGACGACGTCGCTGCAGGCGCCGGCGACTCCATGATGGCCGGCGCCATGTCGCACGACTCCGCCGACATGAAAAACGACGCCGCCCTGAATAACAAGAGCGAGGGCGGCGTCGAGAGCGGCGGAGGAGGAGGCGATGGGGTCGTCAACTGGCAGAATGCGAGGCACAAGGCGGAGATTCTAGCTCACCCGCTTTACGAGCCGCTTCTCTCGGCCCACGTGGCGTGCCTGAGGATCGCCACGCCGGTGGACCAGCTTCCGAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTGGCCAAGTACTCCGGTTTGAGTCACGGCATGGTCGCCGATGATAAGGAGCTTGATCAGTTCATGAGGCACTATGTTTTGTTGCTATGTTCTTTTAAAGAACAACTGCAACAACACGTCCGTGTCCATGCAATGGAAGCAGTGATGGCTTGCTGGGAGATTGAGCAATCACTACAGAGCCTGACAGGAGTTTCCCCCGGGGAGGGTACGGGAGCTACAATGTCCGATGATGATGATGAGCAAGTAGACAGTGATGCAAACTTGTTTGATGGAAGTATGGACGGCCATGACAGTATGGGATTTGGCCCTCTCATCCCGACAGAGAGCGAAAGGTCCTTGATGGAGCGCGTAAGGCAGGAGTTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAGATATTGCGCAAGAGAAGAGCTGGAAAGCTTCCTGGTGACACCACCTCTGTCCTGAAAGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACTGAGGAAGACAAGGCTAGGTTGGTGCAAGAAACTGGTTTGCAATTGAAGCAGATAAACAATTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACCTCCACGGTTTTGAAGAGCAAACGCAAAAGTAATGCAGGTGAAAACAGTGGTGATCGATTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

447

Amino Acids

49.1

Weight (kDa)

5.7

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	176 - 216	3.5e-17	KNOX1 domain
KNOX2	PF03791	230 - 280	1.2e-18	KNOX2 domain
ELK	PF03789	338 - 359	7.7e-07	ELK domain
Homeobox_KN	PF05920	378 - 417	1e-18	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1301
AatII	GACGTC	2 cut(s)	357, 369
Acc16I	TGCGCA	1 cut(s)	1079
Acc36I	ACCTGC	1 cut(s)	1301
AccB1I	GGYRCC	2 cut(s)	377, 401
AccB7I	CCANNNNNTGG	2 cut(s)	315, 787
AccBSI	CCGCTC	2 cut(s)	155, 477
AccI	GTMKAC	2 cut(s)	900, 1056
AccII	CGCG	1 cut(s)	1002
AclWI	GGATC	3 cut(s)	325, 599, 629
AcoI	YGGCCR	4 cut(s)	396, 657, 937, 1154
AcsI	RAATTY	1 cut(s)	112
AcvI	CACGTG	1 cut(s)	577
AcyI	GRCGYC	7 cut(s)	219, 354, 366, 378, 402, 438, 468
AfaI	GTAC	4 cut(s)	8, 194, 665, 862
AfiI	CCNNNNNNNGG	4 cut(s)	315, 787, 856, 857
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	4 cut(s)	1018, 1213, 1272, 1288
AjiI	CACGTC	1 cut(s)	772
AjnI	CCWGG	1 cut(s)	1102
AleI	CACNNNNGTG	2 cut(s)	602, 774
AluBI	AGCT	8 cut(s)	542, 613, 634, 706, 869, 1091, 1099, 1130
AluI	AGCT	8 cut(s)	542, 613, 634, 706, 869, 1091, 1099, 1130
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	325, 599, 629
AlwNI	CAGNNNCTG	1 cut(s)	835
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	8 cut(s)	276, 303, 396, 570, 657, 937, 958, 1154
ApeKI	GCWGC	3 cut(s)	67, 70, 371
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	7 cut(s)	176, 215, 342, 380, 404, 1002, 1080
AspS9I	GGNCC	4 cut(s)	571, 607, 959, 987
AsuC2I	CCSGG	2 cut(s)	852, 853
AsuHPI	GGTGA	4 cut(s)	536, 1118, 1325, 1337
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	2 cut(s)	607, 987
AxyI	CCTNAGG	1 cut(s)	587
BalI	TGGCCA	2 cut(s)	659, 1156
BanI	GGYRCC	2 cut(s)	377, 401
BanII	GRGCYC	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	1179
BbvI	GCAGC	3 cut(s)	79, 82, 358
BccI	CCATC	5 cut(s)	388, 488, 793, 917, 988
BceAI	ACGGC	3 cut(s)	291, 697, 952
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	1104
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	2 cut(s)	852, 853
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	539, 1182
BfmI	CTRYAG	2 cut(s)	372, 827
BfoI	RGCGCY	3 cut(s)	177, 381, 405
BfuAI	ACCTGC	1 cut(s)	1301
BglI	GCCNNNNNGGC	2 cut(s)	302, 578
BisI	GCNGC	9 cut(s)	68, 71, 198, 294, 372, 441, 466, 478, 560
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	9 cut(s)	69, 72, 199, 295, 373, 442, 467, 479, 561
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	3 cut(s)	852, 853, 1104
Bme18I	GGWCC	2 cut(s)	607, 987
BmeT110I	CYCGRG	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	772
BmgT120I	GGNCC	4 cut(s)	571, 607, 959, 987
BmiI	GGNNCC	3 cut(s)	129, 379, 403
BmrFI	CCNGG	3 cut(s)	852, 853, 1104
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	898
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	1179
BpmI	CTGGAG	2 cut(s)	45, 320
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuMI	CCSGG	2 cut(s)	852, 853
Bsa29I	ATCGAT	1 cut(s)	1330
BsaAI	YACGTR	1 cut(s)	577
BsaHI	GRCGYC	7 cut(s)	219, 354, 366, 378, 402, 438, 468
BsaJI	CCNNGG	6 cut(s)	123, 617, 850, 851, 852, 1278
BsaWI	WCCGGW	1 cut(s)	668
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 787, 856, 857
Bse118I	RCCGGY	3 cut(s)	380, 398, 601
Bse1I	ACTGG	5 cut(s)	82, 190, 512, 1204, 1259
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	1 cut(s)	1104
BseCI	ATCGAT	1 cut(s)	1330
BseDI	CCNNGG	6 cut(s)	123, 617, 850, 851, 852, 1278
BseGI	GGATG	1 cut(s)	966
BseLI	CCNNNNNNNGG	4 cut(s)	315, 787, 856, 857
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	5 cut(s)	314, 578, 644, 653, 1158
BseNI	ACTGG	5 cut(s)	82, 190, 512, 1204, 1259
BseRI	GAGGAG	8 cut(s)	170, 249, 252, 255, 258, 498, 501, 1082
BseXI	GCAGC	3 cut(s)	79, 82, 358
BseYI	CCCAGC	1 cut(s)	807
Bsh1236I	CGCG	1 cut(s)	1002
BshFI	GGCC	8 cut(s)	278, 305, 398, 572, 659, 939, 960, 1156
BshNI	GGYRCC	2 cut(s)	377, 401
BshVI	ATCGAT	1 cut(s)	1330
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	7 cut(s)	210, 231, 381, 399, 602, 669, 852
BslI	CCNNNNNNNGG	4 cut(s)	315, 787, 856, 857
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	8 cut(s)	278, 305, 398, 572, 659, 939, 960, 1156
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	330, 591, 621, 709, 1327
Bsp1720I	GCTNAGC	1 cut(s)	630
BspANI	GGCC	8 cut(s)	278, 305, 398, 572, 659, 939, 960, 1156
BspCNI	CTCAG	5 cut(s)	313, 579, 643, 652, 1159
BspDI	ATCGAT	1 cut(s)	1330
BspFNI	CGCG	1 cut(s)	1002
BspHI	TCATGA	2 cut(s)	90, 717
BspLI	GGNNCC	3 cut(s)	129, 379, 403
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	1301
BspPI	GGATC	3 cut(s)	325, 599, 629
BspQI	GCTCTTC	2 cut(s)	1081, 1283
BspT107I	GGYRCC	2 cut(s)	377, 401
BsrBI	CCGCTC	2 cut(s)	155, 477
BsrDI	GCAATG	1 cut(s)	792
BsrFI	RCCGGY	3 cut(s)	380, 398, 601
BsrI	ACTGG	5 cut(s)	82, 190, 512, 1204, 1259
BssAI	RCCGGY	3 cut(s)	380, 398, 601
BssECI	CCNNGG	6 cut(s)	123, 617, 850, 851, 852, 1278
BssMI	GATC	5 cut(s)	330, 591, 621, 709, 1327
BssNI	GRCGYC	7 cut(s)	219, 354, 366, 378, 402, 438, 468
Bst2UI	CCWGG	1 cut(s)	1104
Bst4CI	ACNGT	4 cut(s)	905, 947, 1282, 1322
Bst6I	CTCTTC	3 cut(s)	1081, 1241, 1283
BstACI	GRCGYC	7 cut(s)	219, 354, 366, 378, 402, 438, 468
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	7 cut(s)	223, 376, 382, 400, 583, 636, 805
BstDEI	CTNAG	5 cut(s)	300, 587, 630, 639, 1167
BstDSI	CCRYGG	2 cut(s)	123, 1278
BstF5I	GGATG	1 cut(s)	966
BstFNI	CGCG	1 cut(s)	1002
BstH2I	RGCGCY	3 cut(s)	177, 381, 405
BstHHI	GCGC	7 cut(s)	176, 215, 342, 380, 404, 1002, 1080
BstKTI	GATC	5 cut(s)	333, 594, 624, 712, 1330
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	5 cut(s)	330, 591, 621, 709, 1327
BstNI	CCWGG	1 cut(s)	1104
BstSCI	CCNGG	3 cut(s)	850, 851, 1102
BstSFI	CTRYAG	2 cut(s)	372, 827
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	3 cut(s)	79, 82, 358
BstV2I	GAAGAC	1 cut(s)	1179
BstXI	CCANNNNNNTGG	2 cut(s)	23, 604
Bsu15I	ATCGAT	1 cut(s)	1330
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	8 cut(s)	278, 305, 398, 572, 659, 939, 960, 1156
BsuTUI	ATCGAT	1 cut(s)	1330
BtgI	CCRYGG	2 cut(s)	123, 1278
BtgZI	GCGATG	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	772
BtsCI	GGATG	1 cut(s)	966
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	3 cut(s)	801, 910, 1327
BveI	ACCTGC	1 cut(s)	1301
Cac8I	GCNNGC	7 cut(s)	223, 376, 382, 400, 583, 636, 805
CaiI	CAGNNNCTG	1 cut(s)	835
CciI	TCATGA	2 cut(s)	90, 717
CfoI	GCGC	7 cut(s)	176, 215, 342, 380, 404, 1002, 1080
Cfr10I	RCCGGY	3 cut(s)	380, 398, 601
Cfr13I	GGNCC	4 cut(s)	571, 607, 959, 987
Cfr9I	CCCGGG	1 cut(s)	851
ClaI	ATCGAT	1 cut(s)	1330
CseI	GACGC	4 cut(s)	227, 446, 457, 635
Csp6I	GTAC	4 cut(s)	7, 193, 664, 861
CviAII	CATG	9 cut(s)	91, 391, 406, 427, 685, 718, 782, 941, 1022
CviQI	GTAC	4 cut(s)	7, 193, 664, 861
DdeI	CTNAG	5 cut(s)	300, 587, 630, 639, 1167
DinI	GGCGCC	2 cut(s)	379, 403
DpnI	GATC	5 cut(s)	332, 593, 623, 711, 1329
DpnII	GATC	5 cut(s)	330, 591, 621, 709, 1327
DraI	TTTAAA	1 cut(s)	751
EaeI	YGGCCR	4 cut(s)	396, 657, 937, 1154
Eam1104I	CTCTTC	3 cut(s)	1081, 1241, 1283
EarI	CTCTTC	3 cut(s)	1081, 1241, 1283
EciI	GGCGGA	3 cut(s)	409, 495, 545
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	607, 987
Eco72I	CACGTG	1 cut(s)	577
Eco81I	CCTNAGG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	987
EcoRII	CCWGG	1 cut(s)	1102
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	2 cut(s)	379, 403
EheI	GGCGCC	2 cut(s)	379, 403
FaeI	CATG	9 cut(s)	94, 394, 409, 430, 688, 721, 785, 944, 1025
FatI	CATG	9 cut(s)	90, 390, 405, 426, 684, 717, 781, 940, 1021
FauI	CCCGC	2 cut(s)	332, 555
FbaI	TGATCA	1 cut(s)	709
FblI	GTMKAC	2 cut(s)	900, 1056
Fnu4HI	GCNGC	9 cut(s)	68, 71, 198, 294, 372, 441, 466, 478, 560
FokI	GGATG	1 cut(s)	953
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	9 cut(s)	68, 71, 198, 294, 372, 441, 466, 478, 560
FspBI	CTAG	2 cut(s)	539, 1182
FspI	TGCGCA	1 cut(s)	1079
GlaI	GCGC	7 cut(s)	175, 214, 341, 379, 403, 1001, 1079
GluI	GCNGC	9 cut(s)	68, 71, 198, 294, 372, 441, 466, 478, 560
GsaI	CCCAGC	1 cut(s)	811
GsuI	CTGGAG	2 cut(s)	45, 320
HaeII	RGCGCY	3 cut(s)	177, 381, 405
HaeIII	GGCC	8 cut(s)	278, 305, 398, 572, 659, 939, 960, 1156
HapII	CCGG	7 cut(s)	210, 231, 381, 399, 602, 669, 852
HgaI	GACGC	4 cut(s)	227, 446, 457, 635
HhaI	GCGC	7 cut(s)	176, 215, 342, 380, 404, 1002, 1080
Hin1I	GRCGYC	7 cut(s)	219, 354, 366, 378, 402, 438, 468
Hin1II	CATG	9 cut(s)	94, 394, 409, 430, 688, 721, 785, 944, 1025
Hin6I	GCGC	7 cut(s)	174, 213, 340, 378, 402, 1000, 1078
HinP1I	GCGC	7 cut(s)	174, 213, 340, 378, 402, 1000, 1078
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	2 cut(s)	1097, 1128
HinfI	GANTC	6 cut(s)	284, 386, 416, 535, 676, 1332
HpaII	CCGG	7 cut(s)	210, 231, 381, 399, 602, 669, 852
HphI	GGTGA	4 cut(s)	536, 1118, 1325, 1337
Hpy166II	GTNNAC	5 cut(s)	123, 505, 607, 901, 1057
Hpy188I	TCNGA	5 cut(s)	150, 159, 283, 618, 880
Hpy188III	TCNNGA	6 cut(s)	24, 91, 472, 718, 970, 1123
Hpy8I	GTNNAC	5 cut(s)	123, 505, 607, 901, 1057
Hpy99I	CGWCG	7 cut(s)	356, 365, 368, 371, 440, 473, 629
HpyAV	CCTTC	2 cut(s)	97, 1278
HpyCH4III	ACNGT	4 cut(s)	905, 947, 1282, 1322
HpyCH4IV	ACGT	4 cut(s)	354, 366, 576, 771
HpyCH4V	TGCA	7 cut(s)	374, 763, 785, 911, 1192, 1207, 1310
HpyF3I	CTNAG	5 cut(s)	300, 587, 630, 639, 1167
HpySE526I	ACGT	4 cut(s)	354, 366, 576, 771
Hsp92I	GRCGYC	7 cut(s)	219, 354, 366, 378, 402, 438, 468
Hsp92II	CATG	9 cut(s)	94, 394, 409, 430, 688, 721, 785, 944, 1025
HspAI	GCGC	7 cut(s)	174, 213, 340, 378, 402, 1000, 1078
KasI	GGCGCC	2 cut(s)	377, 401
KroI	GCCGGC	2 cut(s)	380, 398
KroNI	GCCGGC	2 cut(s)	382, 400
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	330, 591, 621, 709, 1327
LguI	GCTCTTC	2 cut(s)	1081, 1283
LmnI	GCTCC	5 cut(s)	127, 160, 703, 866, 997
Lsp1109I	GCAGC	3 cut(s)	79, 82, 358
LweI	GCATC	1 cut(s)	898
MaeI	CTAG	2 cut(s)	539, 1182
MaeII	ACGT	4 cut(s)	354, 366, 576, 771
MaeIII	GTNAC	3 cut(s)	677, 1037, 1106
MalI	GATC	5 cut(s)	332, 593, 623, 711, 1329
MbiI	CCGCTC	2 cut(s)	155, 477
MboI	GATC	5 cut(s)	330, 591, 621, 709, 1327
MboII	GAAGA	4 cut(s)	1098, 1184, 1258, 1300
MfeI	CAATTG	2 cut(s)	1208, 1225
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	2 cut(s)	659, 1156
MluCI	AATT	6 cut(s)	112, 160, 256, 1050, 1208, 1225
MluNI	TGGCCA	2 cut(s)	659, 1156
Mly113I	GGCGCC	2 cut(s)	378, 402
MlyI	GAGTC	4 cut(s)	278, 380, 410, 685
MmeI	TCCRAC	3 cut(s)	306, 333, 1187
Mox20I	TGGCCA	2 cut(s)	659, 1156
MreI	CGCCGGCG	1 cut(s)	380
MroNI	GCCGGC	2 cut(s)	380, 398
MscI	TGGCCA	2 cut(s)	659, 1156
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	2 cut(s)	602, 774
Msp20I	TGGCCA	2 cut(s)	659, 1156
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	7 cut(s)	210, 231, 381, 399, 602, 669, 852
MspR9I	CCNGG	3 cut(s)	852, 853, 1104
MunI	CAATTG	2 cut(s)	1208, 1225
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	1104
MvnI	CGCG	1 cut(s)	1002
NaeI	GCCGGC	2 cut(s)	382, 400
NarI	GGCGCC	2 cut(s)	378, 402
NciI	CCSGG	2 cut(s)	852, 853
NdeII	GATC	5 cut(s)	330, 591, 621, 709, 1327
NgoMIV	GCCGGC	2 cut(s)	380, 398
NlaIII	CATG	9 cut(s)	94, 394, 409, 430, 688, 721, 785, 944, 1025
NlaIV	GGNNCC	3 cut(s)	129, 379, 403
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	2 cut(s)	677, 1106
NsbI	TGCGCA	1 cut(s)	1079
OliI	CACNNNNGTG	2 cut(s)	602, 774
PagI	TCATGA	2 cut(s)	90, 717
PaqCI	CACCTGC	1 cut(s)	1301
PceI	AGGCCT	1 cut(s)	305
PciSI	GCTCTTC	2 cut(s)	1081, 1283
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 420
PctI	GAATGC	1 cut(s)	520
PdiI	GCCGGC	2 cut(s)	382, 400
PfeI	GAWTC	2 cut(s)	535, 1332
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	2 cut(s)	315, 787
PkrI	GCNGC	9 cut(s)	69, 72, 199, 295, 373, 442, 467, 479, 561
PleI	GAGTC	4 cut(s)	278, 380, 410, 684
PluTI	GGCGCC	2 cut(s)	381, 405
PmaCI	CACGTG	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	577
PpsI	GAGTC	4 cut(s)	278, 380, 410, 684
Ppu21I	YACGTR	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	987
Psp5II	RGGWCCY	1 cut(s)	987
Psp6I	CCWGG	1 cut(s)	1102
PspCI	CACGTG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	1102
PspN4I	GGNNCC	3 cut(s)	129, 379, 403
PspPI	GGNCC	4 cut(s)	571, 607, 959, 987
PspPPI	RGGWCCY	1 cut(s)	987
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	835
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	4 cut(s)	8, 194, 665, 862
RsaNI	GTAC	4 cut(s)	7, 193, 664, 861
RseI	CAYNNNNRTG	2 cut(s)	602, 774
SapI	GCTCTTC	2 cut(s)	1081, 1283
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	9 cut(s)	68, 71, 198, 294, 372, 441, 466, 478, 560
Sau3AI	GATC	5 cut(s)	330, 591, 621, 709, 1327
Sau96I	GGNCC	4 cut(s)	571, 607, 959, 987
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	4 cut(s)	278, 380, 410, 685
ScrFI	CCNGG	3 cut(s)	852, 853, 1104
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	2 cut(s)	372, 827
SfoI	GGCGCC	2 cut(s)	379, 403
SgrAI	CRCCGGYG	2 cut(s)	380, 601
SinI	GGWCC	2 cut(s)	607, 987
SmaI	CCCGGG	1 cut(s)	853
SmiMI	CAYNNNNRTG	2 cut(s)	602, 774
Sse9I	AATT	6 cut(s)	112, 160, 256, 1050, 1208, 1225
SseBI	AGGCCT	1 cut(s)	305
SspDI	GGCGCC	2 cut(s)	377, 401
SspMI	CTAG	2 cut(s)	539, 1182
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	850, 851, 1102
TaaI	ACNGT	4 cut(s)	905, 947, 1282, 1322
TaiI	ACGT	4 cut(s)	357, 369, 579, 774
TaqI	TCGA	4 cut(s)	360, 471, 624, 1330
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	6 cut(s)	112, 160, 256, 1050, 1208, 1225
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	6 cut(s)	200, 296, 443, 468, 480, 562
TfiI	GAWTC	2 cut(s)	535, 1332
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	3 cut(s)	801, 910, 1327
TseFI	GTSAC	2 cut(s)	677, 1106
TseI	GCWGC	3 cut(s)	67, 70, 371
Tsp45I	GTSAC	2 cut(s)	677, 1106
TspDTI	ATGAA	6 cut(s)	79, 443, 706, 1038, 1222, 1324
TspGWI	ACGGA	2 cut(s)	140, 764
TspMI	CCCGGG	1 cut(s)	851
TspRI	CASTG	3 cut(s)	801, 910, 1327
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	2 cut(s)	315, 787
VpaK11BI	GGWCC	2 cut(s)	607, 987
XapI	RAATTY	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	851
XmiI	GTMKAC	2 cut(s)	900, 1056
XspI	CTAG	2 cut(s)	539, 1182
ZraI	GACGTC	2 cut(s)	355, 367
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.