Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Forward (+)

61769673 .. 61772488

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG389200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCGTACCACAACCACCTCTCTGGAGACTTACCTCTCCACCACTTCACAGACCAAGCCCAACAGCAGCAGCAACAGAACCAGTCCTTCATGACCGACCAACCTGACCCAAATTCCAAGTCCACGGAGCCCCACCACCACCCGTTTCAGACCGCTCCGAATTGGCTGAACAGCGCCCTCCTCCGCACCCAGTACGCCGCCACCACCTCCGGCGCAGACGCCAGCAACGCCGGAGGAGGAAGCACTAATTTCCTCAACCTCCACACGGCCTCCGACTCCACCGCCGCCTCTCAGGCCTCCAACCAATGGCTCTCCCGCCCGATCCTCCAGCGCAACCACAGCGACGTCATCGACGACGTCGCTGCCGGCGCCGGCGACTCCATGATGGCCGGAGCCATGTCGCACGACTCCGCCGACATGAAAAACGACGCCGCCCTGAATAACAAGAGCGAGGGCGGCGTCGAGAGCGGCGGAGGAGGAGGAGGCGACGGGGTCATCAACTGGCAGAATGCGAGGCACAAGGCGGAGATTCTAGCTCACCCGCTTTACGAGCCGCTTCTCTCGGCACACGTGGCGTGCCTGAGGATCGCCACGCCGGTGGACCAGCTTCCGAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTGGCTAAGTACTCCGGTTTGAGTCAGGGCATGGTCGCCGATGATAAGGAGCTTGATCAGTTCATGAGGCACTATGTTTTGTTGCTATGTTCTTTTAAAGAACAACTGCAACAACACGTCCGTGTCCATGCAATGGAAGCAGTGATGGCTTGCTGGGAGATTGAGCAATCACTACAGAGCCTGACAGGAGTTTCCCCCGGGGAGGGTACGGGAGCTACAATGTCCGATGATGATGATGAGCAAGTAGACAGTGATGCAAACTTGTTTGATGGAAGTATGGACGGCCATGACAGTATGGGATTTGGCCCTCTCATCCCGACAGAGAGCGAAAGGTCCTTGATGGAGCGCGTAAGGCAGGAGTTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAGATATTGCGCAAGAGAAGAGCTGGAAAGCTTCCTGGTGACACCACCTCTGTCCTGAAAGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACTGAGGAAGACAAGGCTAGGTTGGTGCAAGAAACTGGTTTGCAATTGAAGCAGATAAACAATTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACCTCCACGGTTTTGAAGAGCAAGCGCAAAAGTAATGCAGGTGAAAACAGTGGTGATCGATTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

444

Amino Acids

49.01

Weight (kDa)

5.7

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	174 - 214	3.5e-17	KNOX1 domain
KNOX2	PF03791	228 - 278	1.2e-18	KNOX2 domain
ELK	PF03789	336 - 357	7.7e-07	ELK domain
Homeobox_KN	PF05920	376 - 415	9.9e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1295
AatII	GACGTC	2 cut(s)	348, 360
Acc16I	TGCGCA	1 cut(s)	1073
Acc36I	ACCTGC	1 cut(s)	1295
AccB1I	GGYRCC	1 cut(s)	368
AccB7I	CCANNNNNTGG	2 cut(s)	306, 781
AccBSI	CCGCTC	2 cut(s)	155, 468
AccI	GTMKAC	2 cut(s)	894, 1050
AccII	CGCG	1 cut(s)	996
AclWI	GGATC	3 cut(s)	316, 593, 623
AcoI	YGGCCR	3 cut(s)	387, 931, 1148
AcsI	RAATTY	1 cut(s)	112
AcvI	CACGTG	1 cut(s)	571
AcyI	GRCGYC	6 cut(s)	219, 345, 357, 369, 429, 459
AfaI	GTAC	4 cut(s)	8, 194, 659, 856
AfiI	CCNNNNNNNGG	5 cut(s)	265, 306, 781, 850, 851
AflIII	ACRYGT	2 cut(s)	568, 763
AgsI	TTSAA	4 cut(s)	1012, 1207, 1266, 1282
AjiI	CACGTC	1 cut(s)	766
AjnI	CCWGG	1 cut(s)	1096
AleI	CACNNNNGTG	2 cut(s)	596, 768
AluBI	AGCT	8 cut(s)	536, 607, 628, 700, 863, 1085, 1093, 1124
AluI	AGCT	8 cut(s)	536, 607, 628, 700, 863, 1085, 1093, 1124
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	316, 593, 623
AlwNI	CAGNNNCTG	1 cut(s)	829
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	6 cut(s)	267, 294, 387, 931, 952, 1148
ApeKI	GCWGC	3 cut(s)	67, 70, 362
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	7 cut(s)	176, 215, 333, 371, 996, 1074, 1293
AspS9I	GGNCC	3 cut(s)	601, 953, 981
AsuC2I	CCSGG	2 cut(s)	846, 847
AsuHPI	GGTGA	4 cut(s)	530, 1112, 1319, 1331
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	2 cut(s)	601, 981
AxyI	CCTNAGG	1 cut(s)	581
BalI	TGGCCA	1 cut(s)	1150
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	1173
BbvI	GCAGC	3 cut(s)	79, 82, 349
BccI	CCATC	4 cut(s)	379, 787, 911, 982
BceAI	ACGGC	2 cut(s)	282, 946
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	1098
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	2 cut(s)	846, 847
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	533, 1176
BfmI	CTRYAG	1 cut(s)	821
BfoI	RGCGCY	2 cut(s)	177, 372
BfuAI	ACCTGC	1 cut(s)	1295
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 457, 469, 554
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	9 cut(s)	69, 72, 199, 286, 364, 433, 458, 470, 555
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	3 cut(s)	846, 847, 1098
Bme18I	GGWCC	2 cut(s)	601, 981
BmeT110I	CYCGRG	1 cut(s)	845
BmgBI	CACGTC	1 cut(s)	766
BmgT120I	GGNCC	3 cut(s)	601, 953, 981
BmiI	GGNNCC	3 cut(s)	129, 370, 394
BmrFI	CCNGG	3 cut(s)	846, 847, 1098
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	892
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	1173
BpmI	CTGGAG	2 cut(s)	45, 311
Bpu1102I	GCTNAGC	1 cut(s)	624
BpuMI	CCSGG	2 cut(s)	846, 847
Bsa29I	ATCGAT	1 cut(s)	1324
BsaAI	YACGTR	1 cut(s)	571
BsaHI	GRCGYC	6 cut(s)	219, 345, 357, 369, 429, 459
BsaJI	CCNNGG	6 cut(s)	123, 611, 844, 845, 846, 1272
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 306, 781, 850, 851
Bse118I	RCCGGY	3 cut(s)	365, 371, 595
Bse1I	ACTGG	5 cut(s)	82, 190, 506, 1198, 1253
Bse21I	CCTNAGG	1 cut(s)	581
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	1098
BseCI	ATCGAT	1 cut(s)	1324
BseDI	CCNNGG	6 cut(s)	123, 611, 844, 845, 846, 1272
BseGI	GGATG	1 cut(s)	960
BseLI	CCNNNNNNNGG	5 cut(s)	265, 306, 781, 850, 851
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	5 cut(s)	305, 572, 638, 647, 1152
BseNI	ACTGG	5 cut(s)	82, 190, 506, 1198, 1253
BseRI	GAGGAG	6 cut(s)	170, 249, 489, 492, 495, 1076
BseXI	GCAGC	3 cut(s)	79, 82, 349
BseYI	CCCAGC	1 cut(s)	801
Bsh1236I	CGCG	1 cut(s)	996
BshFI	GGCC	6 cut(s)	269, 296, 389, 933, 954, 1150
BshNI	GGYRCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	1324
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	8 cut(s)	210, 231, 366, 372, 390, 596, 663, 846
BslI	CCNNNNNNNGG	5 cut(s)	265, 306, 781, 850, 851
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	6 cut(s)	269, 296, 389, 933, 954, 1150
BsoBI	CYCGRG	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	321, 585, 615, 703, 1321
Bsp1720I	GCTNAGC	1 cut(s)	624
BspANI	GGCC	6 cut(s)	269, 296, 389, 933, 954, 1150
BspCNI	CTCAG	5 cut(s)	304, 573, 637, 646, 1153
BspDI	ATCGAT	1 cut(s)	1324
BspFNI	CGCG	1 cut(s)	996
BspHI	TCATGA	2 cut(s)	90, 711
BspLI	GGNNCC	3 cut(s)	129, 370, 394
BspMI	ACCTGC	1 cut(s)	1295
BspPI	GGATC	3 cut(s)	316, 593, 623
BspQI	GCTCTTC	2 cut(s)	1075, 1277
BspT107I	GGYRCC	1 cut(s)	368
BsrBI	CCGCTC	2 cut(s)	155, 468
BsrDI	GCAATG	1 cut(s)	786
BsrFI	RCCGGY	3 cut(s)	365, 371, 595
BsrI	ACTGG	5 cut(s)	82, 190, 506, 1198, 1253
BssAI	RCCGGY	3 cut(s)	365, 371, 595
BssECI	CCNNGG	6 cut(s)	123, 611, 844, 845, 846, 1272
BssMI	GATC	5 cut(s)	321, 585, 615, 703, 1321
BssNI	GRCGYC	6 cut(s)	219, 345, 357, 369, 429, 459
Bst2UI	CCWGG	1 cut(s)	1098
Bst4CI	ACNGT	4 cut(s)	899, 941, 1276, 1316
Bst6I	CTCTTC	3 cut(s)	1075, 1235, 1277
BstACI	GRCGYC	6 cut(s)	219, 345, 357, 369, 429, 459
BstBAI	YACGTR	1 cut(s)	571
BstC8I	GCNNGC	7 cut(s)	223, 367, 373, 577, 630, 799, 1289
BstDEI	CTNAG	6 cut(s)	291, 581, 624, 633, 654, 1161
BstDSI	CCRYGG	2 cut(s)	123, 1272
BstF5I	GGATG	1 cut(s)	960
BstFNI	CGCG	1 cut(s)	996
BstH2I	RGCGCY	2 cut(s)	177, 372
BstHHI	GCGC	7 cut(s)	176, 215, 333, 371, 996, 1074, 1293
BstKTI	GATC	5 cut(s)	324, 588, 618, 706, 1324
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	5 cut(s)	321, 585, 615, 703, 1321
BstNI	CCWGG	1 cut(s)	1098
BstSCI	CCNGG	3 cut(s)	844, 845, 1096
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	1 cut(s)	996
BstV1I	GCAGC	3 cut(s)	79, 82, 349
BstV2I	GAAGAC	1 cut(s)	1173
BstXI	CCANNNNNNTGG	2 cut(s)	23, 598
Bsu15I	ATCGAT	1 cut(s)	1324
Bsu36I	CCTNAGG	1 cut(s)	581
BsuRI	GGCC	6 cut(s)	269, 296, 389, 933, 954, 1150
BsuTUI	ATCGAT	1 cut(s)	1324
BtgI	CCRYGG	2 cut(s)	123, 1272
BtrI	CACGTC	1 cut(s)	766
BtsCI	GGATG	1 cut(s)	960
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	3 cut(s)	795, 904, 1321
BveI	ACCTGC	1 cut(s)	1295
Cac8I	GCNNGC	7 cut(s)	223, 367, 373, 577, 630, 799, 1289
CaiI	CAGNNNCTG	1 cut(s)	829
CciI	TCATGA	2 cut(s)	90, 711
CfoI	GCGC	7 cut(s)	176, 215, 333, 371, 996, 1074, 1293
Cfr10I	RCCGGY	3 cut(s)	365, 371, 595
Cfr13I	GGNCC	3 cut(s)	601, 953, 981
Cfr9I	CCCGGG	1 cut(s)	845
ClaI	ATCGAT	1 cut(s)	1324
CseI	GACGC	4 cut(s)	227, 437, 448, 629
Csp6I	GTAC	4 cut(s)	7, 193, 658, 855
CviAII	CATG	9 cut(s)	91, 382, 397, 418, 679, 712, 776, 935, 1016
CviQI	GTAC	4 cut(s)	7, 193, 658, 855
DdeI	CTNAG	6 cut(s)	291, 581, 624, 633, 654, 1161
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	5 cut(s)	323, 587, 617, 705, 1323
DpnII	GATC	5 cut(s)	321, 585, 615, 703, 1321
DraI	TTTAAA	1 cut(s)	745
EaeI	YGGCCR	3 cut(s)	387, 931, 1148
Eam1104I	CTCTTC	3 cut(s)	1075, 1235, 1277
EarI	CTCTTC	3 cut(s)	1075, 1235, 1277
EciI	GGCGGA	3 cut(s)	400, 486, 539
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	601, 981
Eco72I	CACGTG	1 cut(s)	571
Eco81I	CCTNAGG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	845
EcoO109I	RGGNCCY	1 cut(s)	981
EcoRII	CCWGG	1 cut(s)	1096
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
FaeI	CATG	9 cut(s)	94, 385, 400, 421, 682, 715, 779, 938, 1019
FatI	CATG	9 cut(s)	90, 381, 396, 417, 678, 711, 775, 934, 1015
FauI	CCCGC	2 cut(s)	323, 549
FbaI	TGATCA	1 cut(s)	703
FblI	GTMKAC	2 cut(s)	894, 1050
Fnu4HI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 457, 469, 554
FokI	GGATG	1 cut(s)	947
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 457, 469, 554
FspBI	CTAG	2 cut(s)	533, 1176
FspI	TGCGCA	1 cut(s)	1073
GlaI	GCGC	7 cut(s)	175, 214, 332, 370, 995, 1073, 1292
GluI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 457, 469, 554
GsaI	CCCAGC	1 cut(s)	805
GsuI	CTGGAG	2 cut(s)	45, 311
HaeII	RGCGCY	2 cut(s)	177, 372
HaeIII	GGCC	6 cut(s)	269, 296, 389, 933, 954, 1150
HapII	CCGG	8 cut(s)	210, 231, 366, 372, 390, 596, 663, 846
HgaI	GACGC	4 cut(s)	227, 437, 448, 629
HhaI	GCGC	7 cut(s)	176, 215, 333, 371, 996, 1074, 1293
Hin1I	GRCGYC	6 cut(s)	219, 345, 357, 369, 429, 459
Hin1II	CATG	9 cut(s)	94, 385, 400, 421, 682, 715, 779, 938, 1019
Hin6I	GCGC	7 cut(s)	174, 213, 331, 369, 994, 1072, 1291
HinP1I	GCGC	7 cut(s)	174, 213, 331, 369, 994, 1072, 1291
HindIII	AAGCTT	2 cut(s)	1091, 1122
HinfI	GANTC	6 cut(s)	275, 377, 407, 529, 670, 1326
HpaII	CCGG	8 cut(s)	210, 231, 366, 372, 390, 596, 663, 846
HphI	GGTGA	4 cut(s)	530, 1112, 1319, 1331
Hpy166II	GTNNAC	4 cut(s)	123, 601, 895, 1051
Hpy188I	TCNGA	5 cut(s)	150, 159, 274, 612, 874
Hpy188III	TCNNGA	6 cut(s)	24, 91, 463, 712, 964, 1117
Hpy8I	GTNNAC	4 cut(s)	123, 601, 895, 1051
Hpy99I	CGWCG	8 cut(s)	347, 356, 359, 362, 431, 464, 491, 623
HpyAV	CCTTC	2 cut(s)	97, 1272
HpyCH4III	ACNGT	4 cut(s)	899, 941, 1276, 1316
HpyCH4IV	ACGT	4 cut(s)	345, 357, 570, 765
HpyCH4V	TGCA	6 cut(s)	757, 779, 905, 1186, 1201, 1304
HpyF3I	CTNAG	6 cut(s)	291, 581, 624, 633, 654, 1161
HpySE526I	ACGT	4 cut(s)	345, 357, 570, 765
Hsp92I	GRCGYC	6 cut(s)	219, 345, 357, 369, 429, 459
Hsp92II	CATG	9 cut(s)	94, 385, 400, 421, 682, 715, 779, 938, 1019
HspAI	GCGC	7 cut(s)	174, 213, 331, 369, 994, 1072, 1291
KasI	GGCGCC	1 cut(s)	368
KroI	GCCGGC	2 cut(s)	365, 371
KroNI	GCCGGC	2 cut(s)	367, 373
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	5 cut(s)	321, 585, 615, 703, 1321
LguI	GCTCTTC	2 cut(s)	1075, 1277
LmnI	GCTCC	6 cut(s)	127, 160, 392, 697, 860, 991
Lsp1109I	GCAGC	3 cut(s)	79, 82, 349
LweI	GCATC	1 cut(s)	892
MaeI	CTAG	2 cut(s)	533, 1176
MaeII	ACGT	4 cut(s)	345, 357, 570, 765
MaeIII	GTNAC	2 cut(s)	1031, 1100
MalI	GATC	5 cut(s)	323, 587, 617, 705, 1323
MbiI	CCGCTC	2 cut(s)	155, 468
MboI	GATC	5 cut(s)	321, 585, 615, 703, 1321
MboII	GAAGA	4 cut(s)	1092, 1178, 1252, 1294
MfeI	CAATTG	2 cut(s)	1202, 1219
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	1150
MluCI	AATT	6 cut(s)	112, 160, 247, 1044, 1202, 1219
MluNI	TGGCCA	1 cut(s)	1150
Mly113I	GGCGCC	1 cut(s)	369
MlyI	GAGTC	4 cut(s)	269, 371, 401, 679
MmeI	TCCRAC	3 cut(s)	297, 324, 1181
Mox20I	TGGCCA	1 cut(s)	1150
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	2 cut(s)	365, 371
MscI	TGGCCA	1 cut(s)	1150
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	2 cut(s)	596, 768
Msp20I	TGGCCA	1 cut(s)	1150
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	8 cut(s)	210, 231, 366, 372, 390, 596, 663, 846
MspR9I	CCNGG	3 cut(s)	846, 847, 1098
MunI	CAATTG	2 cut(s)	1202, 1219
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	1098
MvnI	CGCG	1 cut(s)	996
NaeI	GCCGGC	2 cut(s)	367, 373
NarI	GGCGCC	1 cut(s)	369
NciI	CCSGG	2 cut(s)	846, 847
NdeII	GATC	5 cut(s)	321, 585, 615, 703, 1321
NgoMIV	GCCGGC	2 cut(s)	365, 371
NlaIII	CATG	9 cut(s)	94, 385, 400, 421, 682, 715, 779, 938, 1019
NlaIV	GGNNCC	3 cut(s)	129, 370, 394
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	1 cut(s)	1100
NsbI	TGCGCA	1 cut(s)	1073
OliI	CACNNNNGTG	2 cut(s)	596, 768
PagI	TCATGA	2 cut(s)	90, 711
PaqCI	CACCTGC	1 cut(s)	1295
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	2 cut(s)	1075, 1277
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 411
PctI	GAATGC	1 cut(s)	514
PdiI	GCCGGC	2 cut(s)	367, 373
PfeI	GAWTC	2 cut(s)	529, 1326
PflFI	GACNNNGTC	2 cut(s)	356, 491
PflMI	CCANNNNNTGG	2 cut(s)	306, 781
PkrI	GCNGC	9 cut(s)	69, 72, 199, 286, 364, 433, 458, 470, 555
PleI	GAGTC	4 cut(s)	269, 371, 401, 678
PluTI	GGCGCC	1 cut(s)	372
PmaCI	CACGTG	1 cut(s)	571
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	4 cut(s)	269, 371, 401, 678
Ppu21I	YACGTR	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	981
Psp5II	RGGWCCY	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	1096
PspCI	CACGTG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	1096
PspN4I	GGNNCC	3 cut(s)	129, 370, 394
PspPI	GGNCC	3 cut(s)	601, 953, 981
PspPPI	RGGWCCY	1 cut(s)	981
PstNI	CAGNNNCTG	1 cut(s)	829
PsyI	GACNNNGTC	2 cut(s)	356, 491
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	4 cut(s)	8, 194, 659, 856
RsaNI	GTAC	4 cut(s)	7, 193, 658, 855
RseI	CAYNNNNRTG	2 cut(s)	596, 768
SapI	GCTCTTC	2 cut(s)	1075, 1277
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	9 cut(s)	68, 71, 198, 285, 363, 432, 457, 469, 554
Sau3AI	GATC	5 cut(s)	321, 585, 615, 703, 1321
Sau96I	GGNCC	3 cut(s)	601, 953, 981
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	4 cut(s)	269, 371, 401, 679
ScrFI	CCNGG	3 cut(s)	846, 847, 1098
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	892
SfcI	CTRYAG	1 cut(s)	821
SfoI	GGCGCC	1 cut(s)	370
SgrAI	CRCCGGYG	2 cut(s)	371, 595
SinI	GGWCC	2 cut(s)	601, 981
SmaI	CCCGGG	1 cut(s)	847
SmiMI	CAYNNNNRTG	2 cut(s)	596, 768
Sse9I	AATT	6 cut(s)	112, 160, 247, 1044, 1202, 1219
SseBI	AGGCCT	1 cut(s)	296
SspDI	GGCGCC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	533, 1176
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	844, 845, 1096
TaaI	ACNGT	4 cut(s)	899, 941, 1276, 1316
TaiI	ACGT	4 cut(s)	348, 360, 573, 768
TaqI	TCGA	4 cut(s)	351, 462, 618, 1324
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	6 cut(s)	112, 160, 247, 1044, 1202, 1219
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	6 cut(s)	200, 287, 434, 459, 471, 556
TfiI	GAWTC	2 cut(s)	529, 1326
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	3 cut(s)	795, 904, 1321
TseFI	GTSAC	1 cut(s)	1100
TseI	GCWGC	3 cut(s)	67, 70, 362
Tsp45I	GTSAC	1 cut(s)	1100
TspDTI	ATGAA	6 cut(s)	79, 434, 700, 1032, 1216, 1318
TspGWI	ACGGA	2 cut(s)	140, 758
TspMI	CCCGGG	1 cut(s)	845
TspRI	CASTG	3 cut(s)	795, 904, 1321
Tth111I	GACNNNGTC	2 cut(s)	356, 491
Van91I	CCANNNNNTGG	2 cut(s)	306, 781
VpaK11BI	GGWCC	2 cut(s)	601, 981
XapI	RAATTY	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	845
XmiI	GTMKAC	2 cut(s)	894, 1050
XspI	CTAG	2 cut(s)	533, 1176
ZraI	GACGTC	2 cut(s)	346, 358
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.