Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013814

Physical Location & Seq

Genomic Coordinates Forward (+)

3542139 .. 3544780

Gene Structure 2642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGCGGATCTGACTTGTACGACACCGTTTTTGCTCTATCCATCACTCGTTATCATTCTCTTCTTCTACTCCATTAACCACCATAACCAAATATTCTCATCCGTCGTTGATGATGATCCTTCTTGTCGTCTCTCGTCTTCTCCACAAGCTGTTTTCTCTTCCTTCAGAATCTTCCCTTTTCGTTCTTCATCGTCTTGTCTCAATATCACTTCCAACAACAATTCGACGTCAGAAGTTGTGGTGGTAGAAGAAGTTGATGAAGCGGTGGAGAGGATTGAAGAAGGTTTGGCGATGGCTAGAGCCGCCATAAGGAAGGCCGGAGAAAAGAATCTCCGTCGTGATCGTGATCGGACGAATAATTCGGATGTGGGAGTCGTATCTAATGGATCTGTCTATCTCAATGCTTTTACTTTTCATCAGAGTCACAAAGAGATGGAGAAGAGATTCAAGATATGGACATATAGAGAAGGAGAAGCTCCTCTGTTTCACAAGGGTCCACTCAACAACATTTACGCCATTGAAGGCCAATTCATGGACGAGATCGAGAACGGAAACAGCCGTTTTAAGGCGGCTTCACCGGAGGAAGCCACTGTGTTCTACATCCCCGTAGGGATTGTCAATATCATACGCTTTGTCTATAGACCTTACACTAGCTATGCACGTGACCGTCTCCAAAACATTGTTAAAGACTACATCTCTCTCATCTCTAACCGTTACCCTTACTGGAATCGCAGTCGCGGTGCTGATCACTTCTTCCTCTCCTGTCACGATTGGGCACCTGATGTCTCAGCTGTGGATCCAGAATTATACAAGCATTTTATAAGAGCTCTCTGCAATGCCAATTCCTCCGAAGGATTCACCCCAATGAGAGACGTTTCATTACCGGAAATCAACATTCCACACAGCCAATTAGGGTTTGTACACACCGGAGAACCGCCTCAAAACCGCAAACTCTTAGCATTCTTCGCGGGCGGTTCTCACGGAGATGTCCGAAAAATACTTTTCCAACACTGGAAAGAAAAAGACAAAGACGTCCTTGTCTACGAGAATCTCCCCAAAACCATGAACTACACGAAAATGATGGACAAGGCAAAGTTTTGTTTATGTCCTAGCGGTTGGGAAGTGGCGAGTCCGAGAATTGTCGAGTCACTTTACTCCGGCTGTGTTCCGGTCATCATAGCTGATTATTACGTCCTCCCGTTCAGCGACGTGTTGAATTGGAAGACATTCTCGGTTCATATTCCAATATCAAAGATGCCTGACATAAAGAAGATTCTAGAAGCAATAACAGAAGAAGAGTACTTGAATATGCAAAGAAGAGTGCTTGAGGTTCGGAAACACTTTGTCATAAACAGACCATCAAAGCCATATGATATGTTGCATATGATCATGCATTCTATTTGGTTACGGAGGCTTAATGTTCGAATCCCTCTTTCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

480

Amino Acids

55.36

Weight (kDa)

8.03

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	146 - 429	1.5e-63	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11130 AT5G11130
fragaria_vesca	FvH4_2g28830
malus_domestica	MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica	Prupe.1G483100_v2.0.a1
pyrus_communis	pycom08g12920 pycom15g11490
rosa_chinensis	RchiOBHm_Chr6g0297581
rosa_laevigata	RLG00000011580
rosa_multiflora	Rmu_ssc0000319.1_g000008
rosa_roxburghii	Rroxscaffold_7G00170340
rosa_rugosa	Rorug06G0273900 Rorug06G0274000
rosa_samantha	Rh6AG384800 Rh6CG398700
rosa_wichuraiana	Rw6G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	821
AasI	GACNNNNNNGTC	2 cut(s)	1031, 1037
AatII	GACGTC	2 cut(s)	230, 1035
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	1041
AccII	CGCG	2 cut(s)	738, 968
AclWI	GGATC	5 cut(s)	15, 110, 394, 791, 804
AcuI	CTGAAG	1 cut(s)	148
AcvI	CACGTG	1 cut(s)	662
AcyI	GRCGYC	2 cut(s)	227, 1032
AfaI	GTAC	3 cut(s)	19, 921, 1301
AfiI	CCNNNNNNNGG	3 cut(s)	309, 532, 565
AflIII	ACRYGT	1 cut(s)	1209
AgsI	TTSAA	5 cut(s)	278, 448, 521, 1216, 1306
AjiI	CACGTC	1 cut(s)	1210
AluBI	AGCT	6 cut(s)	149, 476, 654, 791, 827, 1181
AluI	AGCT	6 cut(s)	149, 476, 654, 791, 827, 1181
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	5 cut(s)	134, 203, 674, 790, 864
AlwI	GGATC	5 cut(s)	15, 110, 394, 791, 804
AoxI	GGCC	2 cut(s)	315, 523
ArsI	GACNNNNNNTTYG	4 cut(s)	13, 45, 343, 375
Asp700I	GAANNNNTTC	2 cut(s)	443, 1226
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	567, 850
AsuII	TTCGAA	1 cut(s)	1423
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	778
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	829
BbrPI	CACGTG	1 cut(s)	662
BbsI	GAAGAC	2 cut(s)	129, 1229
Bbv12I	GWGCWC	1 cut(s)	829
BccI	CCATC	5 cut(s)	49, 286, 427, 1075, 1366
BceAI	ACGGC	1 cut(s)	543
BclI	TGATCA	2 cut(s)	745, 1386
BcoDI	GTCTC	5 cut(s)	134, 203, 674, 790, 864
BfaI	CTAG	4 cut(s)	297, 651, 1110, 1277
BfmI	CTRYAG	1 cut(s)	637
BisI	GCNGC	2 cut(s)	303, 570
BlsI	GCNGC	2 cut(s)	304, 571
BmcAI	AGTACT	1 cut(s)	1301
Bme18I	GGWCC	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	1210
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	3 cut(s)	495, 777, 798
BmsI	GCATC	1 cut(s)	1245
BpiI	GAAGAC	2 cut(s)	129, 1229
Bpu14I	TTCGAA	1 cut(s)	1423
BpuEI	CTTGAG	1 cut(s)	1346
BsaAI	YACGTR	1 cut(s)	662
BsaBI	GATNNNNATC	2 cut(s)	114, 345
BsaHI	GRCGYC	2 cut(s)	227, 1032
BsaWI	WCCGGW	4 cut(s)	577, 883, 926, 1168
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 532, 565
Bse1I	ACTGG	2 cut(s)	728, 1016
Bse3DI	GCAATG	1 cut(s)	841
Bse8I	GATNNNNATC	2 cut(s)	114, 345
BseGI	GGATG	3 cut(s)	98, 370, 600
BseJI	GATNNNNATC	2 cut(s)	114, 345
BseLI	CCNNNNNNNGG	3 cut(s)	309, 532, 565
BseMI	GCAATG	1 cut(s)	841
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	2 cut(s)	728, 1016
BseRI	GAGGAG	1 cut(s)	468
BseSI	GKGCMC	1 cut(s)	778
Bsh1236I	CGCG	2 cut(s)	738, 968
BshFI	GGCC	2 cut(s)	317, 525
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	829
BsiSI	CCGG	6 cut(s)	318, 578, 884, 927, 1158, 1169
BslI	CCNNNNNNNGG	3 cut(s)	309, 532, 565
BsmAI	GTCTC	5 cut(s)	134, 203, 674, 790, 864
BsmBI	CGTCTC	3 cut(s)	134, 674, 864
BsmI	GAATGC	2 cut(s)	959, 1393
BsnI	GGCC	2 cut(s)	317, 525
Bsp119I	TTCGAA	1 cut(s)	1423
Bsp1286I	GDGCHC	2 cut(s)	778, 829
Bsp1407I	TGTACA	1 cut(s)	919
Bsp143I	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
BspANI	GGCC	2 cut(s)	317, 525
BspCNI	CTCAG	1 cut(s)	800
BspFNI	CGCG	2 cut(s)	738, 968
BspLI	GGNNCC	3 cut(s)	495, 777, 798
BspPI	GGATC	5 cut(s)	15, 110, 394, 791, 804
BspT104I	TTCGAA	1 cut(s)	1423
BspT107I	GGYRCC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	841
BsrGI	TGTACA	1 cut(s)	919
BsrI	ACTGG	2 cut(s)	728, 1016
BssMI	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
BssNI	GRCGYC	2 cut(s)	227, 1032
Bst4CI	ACNGT	5 cut(s)	27, 592, 668, 713, 1440
Bst6I	CTCTTC	5 cut(s)	65, 163, 434, 1290, 1312
BstACI	GRCGYC	2 cut(s)	227, 1032
BstAUI	TGTACA	1 cut(s)	919
BstBAI	YACGTR	1 cut(s)	662
BstBI	TTCGAA	1 cut(s)	1423
BstC8I	GCNNGC	1 cut(s)	970
BstDEI	CTNAG	2 cut(s)	787, 955
BstF5I	GGATG	3 cut(s)	98, 370, 600
BstFNI	CGCG	2 cut(s)	738, 968
BstKTI	GATC	9 cut(s)	10, 118, 343, 349, 389, 543, 748, 799, 1389
BstMAI	GTCTC	5 cut(s)	134, 203, 674, 790, 864
BstMBI	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 965
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	778
BstUI	CGCG	2 cut(s)	738, 968
BstV2I	GAAGAC	2 cut(s)	129, 1229
BstX2I	RGATCY	3 cut(s)	7, 386, 796
BstYI	RGATCY	3 cut(s)	7, 386, 796
BsuRI	GGCC	2 cut(s)	317, 525
BtgZI	GCGATG	1 cut(s)	305
BtrI	CACGTC	1 cut(s)	1210
BtsCI	GGATG	3 cut(s)	98, 370, 600
BtsIMutI	CAGTG	2 cut(s)	588, 1009
Cac8I	GCNNGC	1 cut(s)	970
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	3 cut(s)	18, 920, 1300
CviAII	CATG	3 cut(s)	532, 1063, 1390
CviQI	GTAC	3 cut(s)	18, 920, 1300
DdeI	CTNAG	2 cut(s)	787, 955
DpnI	GATC	9 cut(s)	9, 117, 342, 348, 388, 542, 747, 798, 1388
DpnII	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
DrdI	GACNNNNNNGTC	2 cut(s)	1031, 1037
DseDI	GACNNNNNNGTC	2 cut(s)	1031, 1037
Eam1104I	CTCTTC	5 cut(s)	65, 163, 434, 1290, 1312
EarI	CTCTTC	5 cut(s)	65, 163, 434, 1290, 1312
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	827
Eco24I	GRGCYC	1 cut(s)	829
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	827
EcoT22I	ATGCAT	1 cut(s)	1395
EcoT38I	GRGCYC	1 cut(s)	829
Esp3I	CGTCTC	3 cut(s)	134, 674, 864
FaeI	CATG	3 cut(s)	535, 1066, 1393
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FatI	CATG	3 cut(s)	531, 1062, 1389
FauI	CCCGC	1 cut(s)	961
FauNDI	CATATG	2 cut(s)	1369, 1383
FbaI	TGATCA	2 cut(s)	745, 1386
FblI	GTMKAC	1 cut(s)	1041
Fnu4HI	GCNGC	2 cut(s)	303, 570
FokI	GGATG	3 cut(s)	85, 377, 587
FriOI	GRGCYC	1 cut(s)	829
Fsp4HI	GCNGC	2 cut(s)	303, 570
FspBI	CTAG	4 cut(s)	297, 651, 1110, 1277
GluI	GCNGC	2 cut(s)	303, 570
HaeIII	GGCC	2 cut(s)	317, 525
HapII	CCGG	6 cut(s)	318, 578, 884, 927, 1158, 1169
Hin1I	GRCGYC	2 cut(s)	227, 1032
Hin1II	CATG	3 cut(s)	535, 1066, 1393
HpaII	CCGG	6 cut(s)	318, 578, 884, 927, 1158, 1169
HphI	GGTGA	2 cut(s)	567, 850
Hpy166II	GTNNAC	3 cut(s)	497, 922, 1042
Hpy188III	TCNNGA	7 cut(s)	338, 344, 448, 544, 767, 800, 1277
Hpy8I	GTNNAC	3 cut(s)	497, 922, 1042
Hpy99I	CGWCG	4 cut(s)	107, 229, 339, 1211
HpyAV	CCTTC	7 cut(s)	129, 172, 275, 307, 461, 515, 845
HpyCH4III	ACNGT	5 cut(s)	27, 592, 668, 713, 1440
HpyCH4IV	ACGT	6 cut(s)	227, 661, 873, 1032, 1191, 1209
HpyCH4V	TGCA	5 cut(s)	659, 834, 1312, 1381, 1393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 965
HpyF3I	CTNAG	2 cut(s)	787, 955
HpySE526I	ACGT	6 cut(s)	227, 661, 873, 1032, 1191, 1209
Hsp92I	GRCGYC	2 cut(s)	227, 1032
Hsp92II	CATG	3 cut(s)	535, 1066, 1393
Ksp22I	TGATCA	2 cut(s)	745, 1386
Kzo9I	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
LmnI	GCTCC	1 cut(s)	481
LweI	GCATC	1 cut(s)	1245
MaeI	CTAG	4 cut(s)	297, 651, 1110, 1277
MaeII	ACGT	6 cut(s)	227, 661, 873, 1032, 1191, 1209
MaeIII	GTNAC	6 cut(s)	422, 662, 713, 764, 1146, 1404
MalI	GATC	9 cut(s)	9, 117, 342, 348, 388, 542, 747, 798, 1388
MboI	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
MflI	RGATCY	3 cut(s)	7, 386, 796
MhlI	GDGCHC	2 cut(s)	778, 829
MluCI	AATT	8 cut(s)	220, 358, 527, 803, 841, 908, 1137, 1216
MlyI	GAGTC	4 cut(s)	381, 430, 1138, 1154
MmeI	TCCRAC	2 cut(s)	237, 1030
Mph1103I	ATGCAT	1 cut(s)	1395
MroXI	GAANNNNTTC	2 cut(s)	443, 1226
MseI	TTAA	4 cut(s)	75, 564, 684, 1416
MslI	CAYNNNNRTG	3 cut(s)	863, 984, 1076
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	6 cut(s)	318, 578, 884, 927, 1158, 1169
Mva1269I	GAATGC	2 cut(s)	959, 1393
MvnI	CGCG	2 cut(s)	738, 968
MwoI	GCNNNNNNNGC	2 cut(s)	302, 965
NdeI	CATATG	2 cut(s)	1369, 1383
NdeII	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
NlaIII	CATG	3 cut(s)	535, 1066, 1393
NlaIV	GGNNCC	3 cut(s)	495, 777, 798
NmuCI	GTSAC	4 cut(s)	422, 662, 764, 1146
NsiI	ATGCAT	1 cut(s)	1395
NspV	TTCGAA	1 cut(s)	1423
PctI	GAATGC	2 cut(s)	959, 1393
PdmI	GAANNNNTTC	2 cut(s)	443, 1226
PfeI	GAWTC	8 cut(s)	168, 328, 444, 727, 855, 1048, 1273, 1425
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	304, 571
PleI	GAGTC	4 cut(s)	380, 429, 1137, 1153
PmaCI	CACGTG	1 cut(s)	662
PmlI	CACGTG	1 cut(s)	662
PpsI	GAGTC	4 cut(s)	380, 429, 1137, 1153
Ppu21I	YACGTR	1 cut(s)	662
PsiI	TTATAA	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	829
PspCI	CACGTG	1 cut(s)	662
PspN4I	GGNNCC	3 cut(s)	495, 777, 798
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	3 cut(s)	7, 386, 796
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	3 cut(s)	19, 921, 1301
RsaNI	GTAC	3 cut(s)	18, 920, 1300
RseI	CAYNNNNRTG	3 cut(s)	863, 984, 1076
SacI	GAGCTC	1 cut(s)	829
SaqAI	TTAA	4 cut(s)	75, 564, 684, 1416
SatI	GCNGC	2 cut(s)	303, 570
Sau3AI	GATC	9 cut(s)	7, 115, 340, 346, 386, 540, 745, 796, 1386
Sau96I	GGNCC	1 cut(s)	494
ScaI	AGTACT	1 cut(s)	1301
SchI	GAGTC	4 cut(s)	381, 430, 1138, 1154
SduI	GDGCHC	2 cut(s)	778, 829
SfaNI	GCATC	1 cut(s)	1245
SfcI	CTRYAG	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	1423
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	3 cut(s)	863, 984, 1076
SmlI	CTYRAG	1 cut(s)	1325
SmoI	CTYRAG	1 cut(s)	1325
Sse9I	AATT	8 cut(s)	220, 358, 527, 803, 841, 908, 1137, 1216
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	4 cut(s)	297, 651, 1110, 1277
SstI	GAGCTC	1 cut(s)	829
TaaI	ACNGT	5 cut(s)	27, 592, 668, 713, 1440
TaiI	ACGT	6 cut(s)	230, 664, 876, 1035, 1194, 1212
TaqI	TCGA	4 cut(s)	224, 543, 1143, 1423
TasI	AATT	8 cut(s)	220, 358, 527, 803, 841, 908, 1137, 1216
TatI	WGTACW	2 cut(s)	919, 1299
TauI	GCSGC	2 cut(s)	305, 572
TfiI	GAWTC	8 cut(s)	168, 328, 444, 727, 855, 1048, 1273, 1425
Tru1I	TTAA	4 cut(s)	75, 564, 684, 1416
Tru9I	TTAA	4 cut(s)	75, 564, 684, 1416
TscAI	CASTG	2 cut(s)	595, 1016
TseFI	GTSAC	4 cut(s)	422, 662, 764, 1146
Tsp45I	GTSAC	4 cut(s)	422, 662, 764, 1146
TspDTI	ATGAA	7 cut(s)	177, 273, 404, 520, 867, 1079, 1226
TspGWI	ACGGA	5 cut(s)	91, 323, 564, 996, 1423
TspRI	CASTG	2 cut(s)	595, 1016
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	494
XbaI	TCTAGA	1 cut(s)	1276
XmiI	GTMKAC	1 cut(s)	1041
XmnI	GAANNNNTTC	2 cut(s)	443, 1226
XspI	CTAG	4 cut(s)	297, 651, 1110, 1277
ZraI	GACGTC	2 cut(s)	228, 1033
ZrmI	AGTACT	1 cut(s)	1301
Zsp2I	ATGCAT	1 cut(s)	1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.