RchiOBHm_Chr6g0297581

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013814
Physical Location & Seq
Forward (+)
59285775 .. 59289438
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26710

Sequence Viewer

Length: 1236 bp
ATGACATTCTTTGTGTTGTTAAATAAACTTCTAAACTCTTATGTCATTGATGGATTTCATGTTAAAGTGCATGAGAAGAATCCCTTTGAGAAAATGGAAGAAGGGTTAGCTAGGGCGAGAGCTGCGATAAGAGAAGCAGGTCGATCAAAACGATACACATCATACAGAAAGGGGGGATTTGTGCCCCGAGGATCCGTTTACATCAACCCTTATTCCTTTCATCAGAGCCACATTGAGATGGAAAAGCGATTTCGAATTTGGCCATACAAGGAAGGAGAGCCACCACTCTTCTACAACGGTCCAGTGAATGACATATACTCCATCGAAGGACAGTTCATGGATGAACTTAGGAAGAGCCCTTTTGCAGCACAAGACCCTAATGAGGCCATTGCGTTCTATCTTCCCATCAGTGTTGTCAGCATTGTGAGATACGTATATAGACCTTACACCAGCTACTCACGCCTACGGCTCCAGATCATCATTGAGGACTACATTAGCATCATGGCAAAGAGATACCCATACTGGAATAGAAGCAATGGGGCTGATCATTTTTTTGTTTCTTGCCATGATTGGGCACCGGATGTTTCAGTTGGCAACCCTAAGCTCTTCAAGAACTTCATTAGAGTACTCTGCAATGCCAACTCCTCAGAAGGCTTTCAAGCAATCCGAGACGTCTCCTTACCCGAAATCAAAATCCCTTTTGGCAAGCTTGGTCCACCCCTACTCACTCACCCCCCAGAAAACCGATCAATCTTCGCCTTCTTCGCAGGTGGTGATCATGGAGACGTGAGAAGGCGCCTCTTCCAGCATTGGAAAAACAAAGATGGTGAGATCAAAGTCCATGACTACCTCCCCAAAACCCAAAACTACACAGAGCTAATGAGCAAGAGCAAGTTTTGTTTGTGCCCTAGTGGGTATGAAGTTGCGAGCCCGAGAGTGGTCGAATCAATTTACGCAGGATGCGTTCCTGTCATCATTTCAGATGCTTATGTGCTGCCCTTTAGTGATGTTCTTGATTGGAGCAAGTTTTCGGTTCATGTTTCGGTGGCAAAGATACCGGAGCTGAAGTCGATTCTACAAACAATTTCTGAGCATGAGTATGTAAAAAAACAAAAGGGGGTGATGCAAGTGCAGCGACACTTCGTGCTGAACCGACCGTCGAAGCCGTTTGATATGTTGCATATGGTGATGCATTCGGTTTGGCTCAGGAGGCTTAATTTGAGGTTGTTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

411

Amino Acids

47.66

Weight (kDa)

9.43

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 65 - 361 3e-64 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 758
AatII GACGTC 1 cut(s) 675
Acc36I ACCTGC 2 cut(s) 128, 758
AccB1I GGYRCC 2 cut(s) 574, 795
AclWI GGATC 2 cut(s) 186, 199
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 1085
AcyI GRCGYC 2 cut(s) 672, 796
AdeI CACNNNGTG 1 cut(s) 1144
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 3 cut(s) 382, 571, 937
AgsI TTSAA 2 cut(s) 610, 659
AjiI CACGTC 1 cut(s) 787
AluBI AGCT 7 cut(s) 110, 122, 453, 604, 709, 877, 1063
AluI AGCT 7 cut(s) 110, 122, 453, 604, 709, 877, 1063
Alw26I GTCTC 3 cut(s) 663, 679, 777
AlwI GGATC 2 cut(s) 186, 199
Ama87I CYCGRG 2 cut(s) 186, 931
AoxI GGCC 2 cut(s) 260, 384
ApeKI GCWGC 4 cut(s) 122, 365, 994, 1132
ApoI RAATTY 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 2 cut(s) 299, 713
AsuHPI GGTGA 5 cut(s) 722, 785, 839, 1132, 1198
AsuII TTCGAA 1 cut(s) 253
AvaI CYCGRG 2 cut(s) 186, 931
AvaII GGWCC 2 cut(s) 299, 713
BaeGI GKGCMC 3 cut(s) 186, 577, 908
BalI TGGCCA 1 cut(s) 262
BamHI GGATCC 1 cut(s) 191
BanI GGYRCC 2 cut(s) 574, 795
BanII GRGCYC 2 cut(s) 359, 932
BbvI GCAGC 4 cut(s) 109, 377, 981, 1144
BccI CCATC 5 cut(s) 44, 232, 329, 413, 818
BceAI ACGGC 2 cut(s) 482, 1150
BclI TGATCA 2 cut(s) 544, 775
BcoDI GTCTC 3 cut(s) 663, 679, 777
BfaI CTAG 2 cut(s) 111, 909
BfoI RGCGCY 1 cut(s) 799
BfuAI ACCTGC 2 cut(s) 128, 758
BisI GCNGC 4 cut(s) 123, 366, 995, 1133
BlsI GCNGC 4 cut(s) 124, 367, 996, 1134
BmcAI AGTACT 1 cut(s) 627
Bme18I GGWCC 2 cut(s) 299, 713
BmeT110I CYCGRG 2 cut(s) 186, 931
BmgBI CACGTC 1 cut(s) 787
BmgT120I GGNCC 2 cut(s) 299, 713
BmiI GGNNCC 4 cut(s) 193, 470, 576, 797
BmsI GCATC 5 cut(s) 507, 950, 973, 1113, 1179
BpmI CTGGAG 1 cut(s) 455
Bpu10I CCTNAGC 2 cut(s) 600, 1205
Bpu14I TTCGAA 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 433
BsaBI GATNNNNATC 1 cut(s) 157
BsaHI GRCGYC 2 cut(s) 672, 796
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 2 cut(s) 577, 1057
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 1052, 1082
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 571, 937
Bse1I ACTGG 2 cut(s) 302, 527
Bse3DI GCAATG 3 cut(s) 387, 541, 640
Bse8I GATNNNNATC 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 3 cut(s) 346, 586, 965
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 3 cut(s) 382, 571, 937
BseMI GCAATG 3 cut(s) 387, 541, 640
BseMII CTCAG 3 cut(s) 660, 1080, 1219
BseNI ACTGG 2 cut(s) 302, 527
BseRI GAGGAG 1 cut(s) 634
BseSI GKGCMC 3 cut(s) 186, 577, 908
BseXI GCAGC 4 cut(s) 109, 377, 981, 1144
BsgI GTGCAG 1 cut(s) 1151
Bsh1285I CGRYCG 1 cut(s) 1157
BshFI GGCC 2 cut(s) 262, 386
BshNI GGYRCC 2 cut(s) 574, 795
BsiEI CGRYCG 1 cut(s) 1157
BsiHKCI CYCGRG 2 cut(s) 186, 931
BsiSI CCGG 2 cut(s) 578, 1058
BslI CCNNNNNNNGG 3 cut(s) 382, 571, 937
BsmAI GTCTC 3 cut(s) 663, 679, 777
BsmBI CGTCTC 3 cut(s) 663, 679, 777
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 2 cut(s) 262, 386
BsoBI CYCGRG 2 cut(s) 186, 931
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 5 cut(s) 186, 359, 577, 908, 932
Bsp143I GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
BspANI GGCC 2 cut(s) 262, 386
BspCNI CTCAG 3 cut(s) 659, 1081, 1218
BspLI GGNNCC 4 cut(s) 193, 470, 576, 797
BspMI ACCTGC 2 cut(s) 128, 758
BspPI GGATC 2 cut(s) 186, 199
BspQI GCTCTTC 2 cut(s) 347, 611
BspT104I TTCGAA 1 cut(s) 253
BspT107I GGYRCC 2 cut(s) 574, 795
BsrDI GCAATG 3 cut(s) 387, 541, 640
BsrI ACTGG 2 cut(s) 302, 527
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
BssNI GRCGYC 2 cut(s) 672, 796
Bst4CI ACNGT 3 cut(s) 299, 333, 1158
Bst6I CTCTTC 4 cut(s) 293, 347, 611, 806
BstACI GRCGYC 2 cut(s) 672, 796
BstBAI YACGTR 1 cut(s) 433
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 707, 928
BstDEI CTNAG 5 cut(s) 347, 600, 646, 1089, 1205
BstF5I GGATG 3 cut(s) 346, 586, 965
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 7 cut(s) 146, 194, 477, 547, 749, 778, 834
BstMAI GTCTC 3 cut(s) 663, 679, 777
BstMBI GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
BstMCI CGRYCG 1 cut(s) 1157
BstMWI GCNNNNNNNGC 5 cut(s) 122, 459, 764, 1132, 1210
BstSLI GKGCMC 3 cut(s) 186, 577, 908
BstSNI TACGTA 1 cut(s) 433
BstV1I GCAGC 4 cut(s) 109, 377, 981, 1144
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 262, 386
BtrI CACGTC 1 cut(s) 787
BtsCI GGATG 3 cut(s) 346, 586, 965
BtsIMutI CAGTG 2 cut(s) 309, 415
BveI ACCTGC 2 cut(s) 128, 758
Cac8I GCNNGC 2 cut(s) 707, 928
CfoI GCGC 1 cut(s) 798
Cfr13I GGNCC 2 cut(s) 299, 713
Csp6I GTAC 1 cut(s) 626
CviAII CATG 9 cut(s) 59, 71, 337, 502, 566, 779, 842, 1037, 1094
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 5 cut(s) 347, 600, 646, 1089, 1205
DinI GGCGCC 1 cut(s) 797
DpnI GATC 7 cut(s) 145, 193, 476, 546, 748, 777, 833
DpnII GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
DraIII CACNNNGTG 1 cut(s) 1144
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 4 cut(s) 293, 347, 611, 806
EarI CTCTTC 4 cut(s) 293, 347, 611, 806
Eco105I TACGTA 1 cut(s) 433
Eco24I GRGCYC 2 cut(s) 359, 932
Eco47I GGWCC 2 cut(s) 299, 713
Eco57I CTGAAG 1 cut(s) 1085
Eco88I CYCGRG 2 cut(s) 186, 931
EcoT22I ATGCAT 1 cut(s) 1194
EcoT38I GRGCYC 2 cut(s) 359, 932
EgeI GGCGCC 1 cut(s) 797
EheI GGCGCC 1 cut(s) 797
Esp3I CGTCTC 3 cut(s) 663, 679, 777
FaeI CATG 9 cut(s) 62, 74, 340, 505, 569, 782, 845, 1040, 1097
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 9 cut(s) 58, 70, 336, 501, 565, 778, 841, 1036, 1093
FauNDI CATATG 1 cut(s) 1182
FbaI TGATCA 2 cut(s) 544, 775
Fnu4HI GCNGC 4 cut(s) 123, 366, 995, 1133
FokI GGATG 3 cut(s) 353, 593, 972
FriOI GRGCYC 2 cut(s) 359, 932
Fsp4HI GCNGC 4 cut(s) 123, 366, 995, 1133
FspBI CTAG 2 cut(s) 111, 909
GlaI GCGC 1 cut(s) 797
GluI GCNGC 4 cut(s) 123, 366, 995, 1133
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 2 cut(s) 262, 386
HapII CCGG 2 cut(s) 578, 1058
HhaI GCGC 1 cut(s) 798
Hin1I GRCGYC 2 cut(s) 672, 796
Hin1II CATG 9 cut(s) 62, 74, 340, 505, 569, 782, 845, 1040, 1097
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 3 cut(s) 79, 944, 1072
HpaII CCGG 2 cut(s) 578, 1058
HphI GGTGA 5 cut(s) 722, 785, 839, 1132, 1198
Hpy166II GTNNAC 2 cut(s) 199, 716
Hpy188I TCNGA 5 cut(s) 225, 649, 668, 982, 1090
Hpy188III TCNNGA 4 cut(s) 472, 610, 1013, 1207
Hpy8I GTNNAC 2 cut(s) 199, 716
Hpy99I CGWCG 1 cut(s) 1162
HpyAV CCTTC 6 cut(s) 95, 266, 320, 644, 769, 786
HpyCH4III ACNGT 3 cut(s) 299, 333, 1158
HpyCH4IV ACGT 3 cut(s) 432, 672, 786
HpyCH4V TGCA 7 cut(s) 70, 365, 633, 1126, 1132, 1180, 1192
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 459, 764, 1132, 1210
HpyF3I CTNAG 5 cut(s) 347, 600, 646, 1089, 1205
HpySE526I ACGT 3 cut(s) 432, 672, 786
Hsp92I GRCGYC 2 cut(s) 672, 796
Hsp92II CATG 9 cut(s) 62, 74, 340, 505, 569, 782, 845, 1040, 1097
HspAI GCGC 1 cut(s) 796
KasI GGCGCC 1 cut(s) 795
Ksp22I TGATCA 2 cut(s) 544, 775
Kzo9I GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
LguI GCTCTTC 2 cut(s) 347, 611
LmnI GCTCC 3 cut(s) 474, 1020, 1060
Lsp1109I GCAGC 4 cut(s) 109, 377, 981, 1144
LweI GCATC 5 cut(s) 507, 950, 973, 1113, 1179
MaeI CTAG 2 cut(s) 111, 909
MaeII ACGT 3 cut(s) 432, 672, 786
MalI GATC 7 cut(s) 145, 193, 476, 546, 748, 777, 833
MboI GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
MboII GAAGA 9 cut(s) 88, 110, 280, 364, 392, 598, 745, 754, 793
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 5 cut(s) 186, 359, 577, 908, 932
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 4 cut(s) 255, 948, 1083, 1216
MluNI TGGCCA 1 cut(s) 262
Mly113I GGCGCC 1 cut(s) 796
MnlI CCTC 8 cut(s) 182, 376, 478, 655, 809, 860, 1203, 1215
Mox20I TGGCCA 1 cut(s) 262
Mph1103I ATGCAT 1 cut(s) 1194
MroXI GAANNNNTTC 1 cut(s) 654
MscI TGGCCA 1 cut(s) 262
MseI TTAA 3 cut(s) 20, 63, 1215
MslI CAYNNNNRTG 2 cut(s) 236, 1098
Msp20I TGGCCA 1 cut(s) 262
MspI CCGG 2 cut(s) 578, 1058
Mva1269I GAATGC 1 cut(s) 1192
MwoI GCNNNNNNNGC 5 cut(s) 122, 459, 764, 1132, 1210
NarI GGCGCC 1 cut(s) 796
NdeI CATATG 1 cut(s) 1182
NdeII GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
NlaIII CATG 9 cut(s) 62, 74, 340, 505, 569, 782, 845, 1040, 1097
NlaIV GGNNCC 4 cut(s) 193, 470, 576, 797
NsiI ATGCAT 1 cut(s) 1194
NspV TTCGAA 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 758
PciSI GCTCTTC 2 cut(s) 347, 611
PcsI WCGNNNNNNNCGW 2 cut(s) 148, 960
PctI GAATGC 1 cut(s) 1192
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 3 cut(s) 79, 944, 1072
PkrI GCNGC 4 cut(s) 124, 367, 996, 1134
PluTI GGCGCC 1 cut(s) 799
Ppu21I YACGTR 1 cut(s) 433
PspN4I GGNNCC 4 cut(s) 193, 470, 576, 797
PspPI GGNCC 2 cut(s) 299, 713
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
RseI CAYNNNNRTG 2 cut(s) 236, 1098
SapI GCTCTTC 2 cut(s) 347, 611
SaqAI TTAA 3 cut(s) 20, 63, 1215
SatI GCNGC 4 cut(s) 123, 366, 995, 1133
Sau3AI GATC 7 cut(s) 143, 191, 474, 544, 746, 775, 831
Sau96I GGNCC 2 cut(s) 299, 713
ScaI AGTACT 1 cut(s) 627
SduI GDGCHC 5 cut(s) 186, 359, 577, 908, 932
SfaNI GCATC 5 cut(s) 507, 950, 973, 1113, 1179
SfoI GGCGCC 1 cut(s) 797
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 2 cut(s) 299, 713
SmiMI CAYNNNNRTG 2 cut(s) 236, 1098
SnaBI TACGTA 1 cut(s) 433
Sse9I AATT 4 cut(s) 255, 948, 1083, 1216
SspDI GGCGCC 1 cut(s) 795
SspMI CTAG 2 cut(s) 111, 909
TaaI ACNGT 3 cut(s) 299, 333, 1158
TaiI ACGT 3 cut(s) 435, 675, 789
TaqI TCGA 6 cut(s) 142, 253, 324, 942, 1070, 1160
TasI AATT 4 cut(s) 255, 948, 1083, 1216
TatI WGTACW 1 cut(s) 625
TfiI GAWTC 3 cut(s) 79, 944, 1072
Tru1I TTAA 3 cut(s) 20, 63, 1215
Tru9I TTAA 3 cut(s) 20, 63, 1215
TscAI CASTG 2 cut(s) 309, 415
TseI GCWGC 4 cut(s) 122, 365, 994, 1132
TspDTI ATGAA 7 cut(s) 47, 209, 325, 357, 607, 933, 1025
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 2 cut(s) 309, 415
VpaK11BI GGWCC 2 cut(s) 299, 713
XapI RAATTY 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 2 cut(s) 111, 909
ZraI GACGTC 1 cut(s) 673
ZrmI AGTACT 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.