pycom15g11490

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013814
Physical Location & Seq
Reverse (-)
7780645 .. 7783855
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11490.3

Sequence Viewer

Length: 900 bp
ATGGGATGGCAAGAGCAAGAGCCGCGATACGAGAAGCTGCTCGATCAAGAAGCTATACGTCATACAAAAACGAGGATTTTGTTCCAAGAGCGATCGGTTTACATCAACCCTTATTCCTTTCATCAGAGCCACATAGAGATGGAGAAAAGATTTCGAATTTGGTCGTACAAGGAAGGAGAGCCACCACTCTTCCACCAAGGGCCGATGAACGACATTTACTCCATTGAAGGCCAGTTCATGGATGAAGTTGAGTTGAGTGGGAATAGCCCGTTTGTGGCGAAAGACCCTGATGAGGCCATCGCGTTTTTTCTACCCATCAGTGTTGTCAACATTGTGAGATACGTCTACAGGCCTTACACCAGCTACTCTCGTGTCCGGCTCCAGAACATTGTCGAGGACTACATCAGAATCATATCGAAGAAATATCCATACTGGAATAGAAGCAATGGAGCTGACCATTTTCTGGTCTCTTGTCATGATTGGGCACCTGATATTTCGGCTGGACACCCTAAAATTTTGAAGAACTTAATTAGAGTACTCTGCAATGCGAATTGTTCAGAAGGTTTCCAACCAGTCCGAGATGTCCCCCTCCCCGAAATCAAAATCCCGTTTGGAAAGTTAGGCTCTCCCCTCCTTACCCATCCCCCTAAGAACCGTTCAATCTTTGCTTTCTTTGCCGGCGGTGATCATGGAGACGTAAGAAAGATACTATTCAAGCACTGGAAAAACAAAGACAAGGAAATCCAAGTCCATGACTACCTCCCCAAAACCTTAAACTACACACATATAATGGCGCAGACCAAGTTTTGCATGTGCCCTAGCGGGTATGAAGTTGCAAGCCCTAGAGTGGTTGAGGCCATATATGCAGGCTGTGTCCCAGTGCGGATCGATCATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

300

Amino Acids

34.86

Weight (kDa)

8.41

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 484
AccB7I CCANNNNNTGG 2 cut(s) 238, 463
AccI GTMKAC 1 cut(s) 345
AccII CGCG 2 cut(s) 25, 302
AciI CCGC 4 cut(s) 23, 681, 822, 883
AclWI GGATC 1 cut(s) 893
AcsI RAATTY 2 cut(s) 156, 513
AfaI GTAC 2 cut(s) 167, 537
AfiI CCNNNNNNNGG 5 cut(s) 238, 274, 292, 463, 847
AgsI TTSAA 4 cut(s) 227, 520, 660, 715
AluBI AGCT 4 cut(s) 37, 53, 363, 452
AluI AGCT 4 cut(s) 37, 53, 363, 452
Alw26I GTCTC 2 cut(s) 472, 687
AlwI GGATC 1 cut(s) 893
AoxI GGCC 5 cut(s) 200, 229, 294, 350, 855
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 156, 513
AspLEI GCGC 1 cut(s) 796
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 695
AsuII TTCGAA 1 cut(s) 154
BaeGI GKGCMC 2 cut(s) 487, 818
BanI GGYRCC 1 cut(s) 484
BauI CACGAG 1 cut(s) 369
BbvI GCAGC 1 cut(s) 24
BccI CCATC 4 cut(s) 133, 305, 323, 648
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 2 cut(s) 472, 687
BfaI CTAG 2 cut(s) 819, 843
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 2 cut(s) 23, 38
BlsI GCNGC 2 cut(s) 24, 39
BmcAI AGTACT 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 380, 486
BmrI ACTGGG 1 cut(s) 872
BmuI ACTGGG 1 cut(s) 872
BpmI CTGGAG 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 274, 292, 463, 847
Bse118I RCCGGY 1 cut(s) 677
Bse1I ACTGG 5 cut(s) 232, 437, 572, 725, 878
Bse3DI GCAATG 2 cut(s) 451, 550
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 11, 247, 640
BseLI CCNNNNNNNGG 5 cut(s) 238, 274, 292, 463, 847
BseMI GCAATG 2 cut(s) 451, 550
BseNI ACTGG 5 cut(s) 232, 437, 572, 725, 878
BseSI GKGCMC 2 cut(s) 487, 818
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 2 cut(s) 25, 302
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 202, 231, 296, 352, 857
BshNI GGYRCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 888
BsiEI CGRYCG 1 cut(s) 95
BsiSI CCGG 2 cut(s) 376, 678
BslFI GGGAC 2 cut(s) 569, 860
BslI CCNNNNNNNGG 5 cut(s) 238, 274, 292, 463, 847
BsmAI GTCTC 2 cut(s) 472, 687
BsmBI CGTCTC 1 cut(s) 687
BsmFI GGGAC 2 cut(s) 569, 860
BsnI GGCC 5 cut(s) 202, 231, 296, 352, 857
Bso31I GGTCTC 1 cut(s) 472
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 487, 818
Bsp143I GATC 5 cut(s) 43, 92, 685, 885, 889
BspACI CCGC 4 cut(s) 23, 681, 822, 883
BspANI GGCC 5 cut(s) 202, 231, 296, 352, 857
BspDI ATCGAT 1 cut(s) 888
BspFNI CGCG 2 cut(s) 25, 302
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 380, 486
BspPI GGATC 1 cut(s) 893
BspT104I TTCGAA 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 472
BsrDI GCAATG 2 cut(s) 451, 550
BsrFI RCCGGY 1 cut(s) 677
BsrI ACTGG 5 cut(s) 232, 437, 572, 725, 878
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 5 cut(s) 43, 92, 685, 885, 889
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 679, 838, 868
BstDEI CTNAG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 11, 247, 640
BstFNI CGCG 2 cut(s) 25, 302
BstHHI GCGC 1 cut(s) 796
BstKTI GATC 5 cut(s) 46, 95, 688, 888, 892
BstMAI GTCTC 2 cut(s) 472, 687
BstMBI GATC 5 cut(s) 43, 92, 685, 885, 889
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 3 cut(s) 22, 674, 863
BstNSI RCATGY 1 cut(s) 814
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 2 cut(s) 487, 818
BstUI CGCG 2 cut(s) 25, 302
BstV1I GCAGC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 888
BsuRI GGCC 5 cut(s) 202, 231, 296, 352, 857
BsuTUI ATCGAT 1 cut(s) 888
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 3 cut(s) 11, 247, 640
BtsIMutI CAGTG 3 cut(s) 325, 718, 885
Cac8I GCNNGC 3 cut(s) 679, 838, 868
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 796
Cfr10I RCCGGY 1 cut(s) 677
Cfr13I GGNCC 1 cut(s) 200
ClaI ATCGAT 1 cut(s) 888
Csp6I GTAC 2 cut(s) 166, 536
CviAII CATG 5 cut(s) 238, 476, 689, 752, 811
CviQI GTAC 2 cut(s) 166, 536
DdeI CTNAG 1 cut(s) 648
DpnI GATC 5 cut(s) 45, 94, 687, 887, 891
DpnII GATC 5 cut(s) 43, 92, 685, 885, 889
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 687
FaeI CATG 5 cut(s) 241, 479, 692, 755, 814
FaqI GGGAC 2 cut(s) 569, 860
FatI CATG 5 cut(s) 237, 475, 688, 751, 810
FauI CCCGC 1 cut(s) 815
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 23, 38
FokI GGATG 3 cut(s) 18, 254, 627
Fsp4HI GCNGC 2 cut(s) 23, 38
FspBI CTAG 2 cut(s) 819, 843
GlaI GCGC 1 cut(s) 795
GluI GCNGC 2 cut(s) 23, 38
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 5 cut(s) 202, 231, 296, 352, 857
HapII CCGG 2 cut(s) 376, 678
HhaI GCGC 1 cut(s) 796
Hin1II CATG 5 cut(s) 241, 479, 692, 755, 814
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 408
HpaII CCGG 2 cut(s) 376, 678
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 3 cut(s) 100, 328, 346
Hpy188I TCNGA 5 cut(s) 126, 407, 559, 578, 899
Hpy188III TCNNGA 3 cut(s) 47, 382, 476
Hpy8I GTNNAC 3 cut(s) 100, 328, 346
HpyAV CCTTC 3 cut(s) 167, 221, 554
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 3 cut(s) 58, 342, 696
HpyCH4V TGCA 4 cut(s) 543, 810, 836, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 674, 863
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 3 cut(s) 58, 342, 696
Hsp92II CATG 5 cut(s) 241, 479, 692, 755, 814
HspAI GCGC 1 cut(s) 794
KroI GCCGGC 1 cut(s) 677
KroNI GCCGGC 1 cut(s) 679
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 5 cut(s) 43, 92, 685, 885, 889
LmnI GCTCC 2 cut(s) 384, 449
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 2 cut(s) 819, 843
MaeII ACGT 3 cut(s) 58, 342, 696
MalI GATC 5 cut(s) 45, 94, 687, 887, 891
MboI GATC 5 cut(s) 43, 92, 685, 885, 889
MboII GAAGA 3 cut(s) 181, 430, 532
MhlI GDGCHC 2 cut(s) 487, 818
MluCI AATT 4 cut(s) 156, 513, 528, 550
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 7 cut(s) 66, 286, 388, 599, 641, 770, 847
MroNI GCCGGC 1 cut(s) 677
MseI TTAA 2 cut(s) 527, 773
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 2 cut(s) 376, 678
MvnI CGCG 2 cut(s) 25, 302
MwoI GCNNNNNNNGC 3 cut(s) 22, 674, 863
NaeI GCCGGC 1 cut(s) 679
NdeII GATC 5 cut(s) 43, 92, 685, 885, 889
NgoMIV GCCGGC 1 cut(s) 677
NlaIII CATG 5 cut(s) 241, 479, 692, 755, 814
NlaIV GGNNCC 2 cut(s) 380, 486
NspI RCATGY 1 cut(s) 814
NspV TTCGAA 1 cut(s) 154
PagI TCATGA 1 cut(s) 475
PceI AGGCCT 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 408
PflMI CCANNNNNTGG 2 cut(s) 238, 463
PkrI GCNGC 2 cut(s) 24, 39
Ple19I CGATCG 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 380, 486
PspPI GGNCC 1 cut(s) 200
PsrI GAACNNNNNNTAC 2 cut(s) 200, 232
PvuI CGATCG 1 cut(s) 95
RsaI GTAC 2 cut(s) 167, 537
RsaNI GTAC 2 cut(s) 166, 536
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 2 cut(s) 527, 773
SatI GCNGC 2 cut(s) 23, 38
Sau3AI GATC 5 cut(s) 43, 92, 685, 885, 889
Sau96I GGNCC 1 cut(s) 200
ScaI AGTACT 1 cut(s) 537
SduI GDGCHC 2 cut(s) 487, 818
SfcI CTRYAG 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 4 cut(s) 156, 513, 528, 550
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 4 cut(s) 23, 681, 822, 883
SspMI CTAG 2 cut(s) 819, 843
StuI AGGCCT 1 cut(s) 352
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 3 cut(s) 61, 345, 699
TaqI TCGA 5 cut(s) 42, 154, 393, 416, 888
TasI AATT 4 cut(s) 156, 513, 528, 550
TatI WGTACW 1 cut(s) 535
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 2 cut(s) 527, 773
Tru9I TTAA 2 cut(s) 527, 773
TscAI CASTG 3 cut(s) 325, 725, 885
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 5 cut(s) 110, 221, 226, 258, 843
TspRI CASTG 3 cut(s) 325, 725, 885
Van91I CCANNNNNTGG 2 cut(s) 238, 463
XapI RAATTY 2 cut(s) 156, 513
XceI RCATGY 1 cut(s) 814
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 2 cut(s) 819, 843
ZrmI AGTACT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.