Rh6AG384800

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013814
Physical Location & Seq
Forward (+)
58424973 .. 58430724
5752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG384800.1

Sequence Viewer

Length: 1539 bp
ATGGGTGGCTTGGGTTGCACCAGCACTCGTTATCTATTCCCATCTCTTTTCCTCATACTTTTCTTCTCTTTCATAAACCACCACTTCCATTACTTACCATTCCCTTACCATAAAAATTCCAAACTCTCCCAGACGCACCATCCCATTTTCTCCCTCCCAAACAATTCCACACTCTCCCTCACCGAAAATTCCACCCTCTCCATCCCAAACAATTCCAGACTCTCCTTTCCGATAAGCTCCAAACTCTCCATTCCGAGTAACTCCACACTATTCTCCAACCAAACTCTAGTCACCGATGATATATACCTCAACGATCGTCTCAACAATTCAACCACAAATAGCACTGAATCTACTCAACATGTCATTACAGTGCATGAGAAGAATCCCTTTGAGAAAATGGAAGAAGGGTTAGCTAGGGCGAGAGCTGAGATAAGAGAAGCAGGTCGATCAAAACGATACACATCATACAGAAAGGGGGGATTTGTGCCCCGAGGATCCGTTTACATCAACCCTTATTCCTTTCATCAGAGCCACATTGAGATGGAAAAGCGATTTCGAATTTGGCCATACAAGGAAGGAGAGCCACCACTCTTCTACAACGGTCCAGTGAATGACATATACTCCATCGAAGGACAGTTCATGGATGAACTTAGGAAGAGCCCTTTTGCAGCACAAGACCCTAATGAGGCCATTGCGTTCTATCTTCCCATTAGTGTTGTCAGCATTGTGAGATACGTATATAGACCTTACACCAGCTACTCACGCCTACGGCTCCAGATCATCATTGAGGACTACATTAGCATCATGGCAAAGAGATACCCATACTGGAATAGAAGCAATGGGGCTGATCATTTTTTTGTTTCTTGCCATGATTGGGCACCGGATGTTTCAGTTGGCAAACCTAAGCTCTTCAAGAACTTCATTAGAGTACTCTGCAATGCCAACTCCTCAGAAGGCTTTCAAGCAATCCGAGACGTCTCCTTACCCGAAATCAAAATCCCTTTTGGCAAGCTTGGTCCACCCCTACTCACTCAACCCCCAGAAAACCGATCAATCTTCGCCTTCTTCGCAGGTGGTGATCATGGAGACGTGAGAAGGCGCCTCTTCCAGCATTGGAAAAACAAAGATGGTGAGATCAAAGTCCATGACTACCTCCCCAAAACCCAAAACTACACAGAGCTAATGAGCAAGAGCAAGTTTTGTTTGTGCCCTAGTGGGTATGAAGTTGCGAGCCCGAGAGTGGTCGAATCAATTTACGCAGGATGCGTTCCTGTCATCATTTCAGATGCTTATGTGCTCCCCTTTAGTGATGTTCTTGATTGGAGCAAGTTTTCGGTTCATGTTTCGGTGGCAAAGATACCGGAGCTGAAGTCGATTCTACAAACAATTTCTGAGCATGAGTATGTAAAAAAACAAAAGGGGGTGATGCAAGTGCAGCGACACTTCGTGCTGAACCGACCGTCGAAGCCGTTTGATATGTTGCATATGGTGATGCATTCGGTTTGGCTCAGGAGGCTTAATTTGAGGTTGTTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

512

Amino Acids

59.0

Weight (kDa)

9.35

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 166 - 462 2.5e-64 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1061
AatII GACGTC 1 cut(s) 978
Acc36I ACCTGC 2 cut(s) 431, 1061
AccB1I GGYRCC 2 cut(s) 877, 1098
AclWI GGATC 2 cut(s) 489, 502
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 3 cut(s) 115, 187, 558
AcuI CTGAAG 1 cut(s) 1388
AcyI GRCGYC 2 cut(s) 975, 1099
AdeI CACNNNGTG 1 cut(s) 1447
AfaI GTAC 1 cut(s) 930
AfiI CCNNNNNNNGG 3 cut(s) 685, 874, 1240
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 3 cut(s) 330, 913, 962
AjiI CACGTC 1 cut(s) 1090
AluBI AGCT 8 cut(s) 237, 413, 425, 756, 907, 1012, 1180, 1366
AluI AGCT 8 cut(s) 237, 413, 425, 756, 907, 1012, 1180, 1366
Alw21I GWGCWC 1 cut(s) 1299
Alw26I GTCTC 4 cut(s) 323, 966, 982, 1080
AlwI GGATC 2 cut(s) 489, 502
Ama87I CYCGRG 2 cut(s) 489, 1234
AoxI GGCC 2 cut(s) 563, 687
ApeKI GCWGC 2 cut(s) 668, 1435
ApoI RAATTY 3 cut(s) 115, 187, 558
Asp700I GAANNNNTTC 1 cut(s) 957
AspLEI GCGC 1 cut(s) 1101
AspS9I GGNCC 2 cut(s) 602, 1016
AsuHPI GGTGA 6 cut(s) 172, 283, 1088, 1142, 1435, 1501
AsuII TTCGAA 1 cut(s) 556
AvaI CYCGRG 2 cut(s) 489, 1234
AvaII GGWCC 2 cut(s) 602, 1016
BaeGI GKGCMC 3 cut(s) 489, 880, 1211
BalI TGGCCA 1 cut(s) 565
BamHI GGATCC 1 cut(s) 494
BanI GGYRCC 2 cut(s) 877, 1098
BanII GRGCYC 2 cut(s) 662, 1235
Bbv12I GWGCWC 1 cut(s) 1299
BbvI GCAGC 2 cut(s) 680, 1447
BccI CCATC 6 cut(s) 49, 147, 209, 535, 632, 1121
BceAI ACGGC 2 cut(s) 785, 1453
BclI TGATCA 2 cut(s) 847, 1078
BcoDI GTCTC 4 cut(s) 323, 966, 982, 1080
BfaI CTAG 3 cut(s) 287, 414, 1212
BfoI RGCGCY 1 cut(s) 1102
BfuAI ACCTGC 2 cut(s) 431, 1061
BisI GCNGC 2 cut(s) 669, 1436
BlsI GCNGC 2 cut(s) 670, 1437
BmcAI AGTACT 1 cut(s) 930
Bme18I GGWCC 2 cut(s) 602, 1016
BmeT110I CYCGRG 2 cut(s) 489, 1234
BmgBI CACGTC 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 602, 1016
BmiI GGNNCC 4 cut(s) 496, 773, 879, 1100
BmsI GCATC 5 cut(s) 810, 1253, 1276, 1416, 1482
BpmI CTGGAG 1 cut(s) 758
Bpu10I CCTNAGC 2 cut(s) 903, 1508
Bpu14I TTCGAA 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 460
BsaHI GRCGYC 2 cut(s) 975, 1099
BsaJI CCNNGG 1 cut(s) 490
BsaWI WCCGGW 2 cut(s) 880, 1360
BsaXI ACNNNNNCTCC 4 cut(s) 605, 635, 1355, 1385
Bsc4I CCNNNNNNNGG 3 cut(s) 685, 874, 1240
Bse1I ACTGG 2 cut(s) 605, 830
Bse3DI GCAATG 3 cut(s) 690, 844, 943
Bse8I GATNNNNATC 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 5 cut(s) 139, 201, 649, 889, 1268
BseJI GATNNNNATC 1 cut(s) 460
BseLI CCNNNNNNNGG 3 cut(s) 685, 874, 1240
BseMI GCAATG 3 cut(s) 690, 844, 943
BseMII CTCAG 4 cut(s) 417, 963, 1383, 1522
BseNI ACTGG 2 cut(s) 605, 830
BseRI GAGGAG 1 cut(s) 937
BseSI GKGCMC 3 cut(s) 489, 880, 1211
BseXI GCAGC 2 cut(s) 680, 1447
BsgI GTGCAG 1 cut(s) 1454
Bsh1285I CGRYCG 2 cut(s) 316, 1460
BshFI GGCC 2 cut(s) 565, 689
BshNI GGYRCC 2 cut(s) 877, 1098
BsiEI CGRYCG 2 cut(s) 316, 1460
BsiHKAI GWGCWC 1 cut(s) 1299
BsiHKCI CYCGRG 2 cut(s) 489, 1234
BsiSI CCGG 2 cut(s) 881, 1361
BslI CCNNNNNNNGG 3 cut(s) 685, 874, 1240
BsmAI GTCTC 4 cut(s) 323, 966, 982, 1080
BsmBI CGTCTC 4 cut(s) 323, 966, 982, 1080
BsmI GAATGC 1 cut(s) 1495
BsnI GGCC 2 cut(s) 565, 689
BsoBI CYCGRG 2 cut(s) 489, 1234
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 6 cut(s) 489, 662, 880, 1211, 1235, 1299
Bsp143I GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
BspANI GGCC 2 cut(s) 565, 689
BspCNI CTCAG 4 cut(s) 418, 962, 1384, 1521
BspLI GGNNCC 4 cut(s) 496, 773, 879, 1100
BspMI ACCTGC 2 cut(s) 431, 1061
BspPI GGATC 2 cut(s) 489, 502
BspQI GCTCTTC 2 cut(s) 650, 914
BspT104I TTCGAA 1 cut(s) 556
BspT107I GGYRCC 2 cut(s) 877, 1098
BsrDI GCAATG 3 cut(s) 690, 844, 943
BsrI ACTGG 2 cut(s) 605, 830
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
BssNI GRCGYC 2 cut(s) 975, 1099
Bst4CI ACNGT 4 cut(s) 370, 602, 636, 1461
Bst6I CTCTTC 4 cut(s) 596, 650, 914, 1109
BstACI GRCGYC 2 cut(s) 975, 1099
BstBAI YACGTR 1 cut(s) 736
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 1010, 1231
BstDEI CTNAG 6 cut(s) 426, 650, 903, 949, 1392, 1508
BstF5I GGATG 5 cut(s) 139, 201, 649, 889, 1268
BstH2I RGCGCY 1 cut(s) 1102
BstHHI GCGC 1 cut(s) 1101
BstKTI GATC 8 cut(s) 316, 449, 497, 780, 850, 1052, 1081, 1137
BstMAI GTCTC 4 cut(s) 323, 966, 982, 1080
BstMBI GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
BstMCI CGRYCG 2 cut(s) 316, 1460
BstMWI GCNNNNNNNGC 5 cut(s) 15, 762, 1067, 1435, 1513
BstNSI RCATGY 1 cut(s) 362
BstSLI GKGCMC 3 cut(s) 489, 880, 1211
BstSNI TACGTA 1 cut(s) 736
BstV1I GCAGC 2 cut(s) 680, 1447
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BsuRI GGCC 2 cut(s) 565, 689
BtrI CACGTC 1 cut(s) 1090
BtsCI GGATG 5 cut(s) 139, 201, 649, 889, 1268
BtsIMutI CAGTG 3 cut(s) 342, 375, 612
BveI ACCTGC 2 cut(s) 431, 1061
Cac8I GCNNGC 2 cut(s) 1010, 1231
CfoI GCGC 1 cut(s) 1101
Cfr13I GGNCC 2 cut(s) 602, 1016
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 929
CviAII CATG 9 cut(s) 359, 374, 640, 805, 869, 1082, 1145, 1340, 1397
CviQI GTAC 1 cut(s) 929
DdeI CTNAG 6 cut(s) 426, 650, 903, 949, 1392, 1508
DinI GGCGCC 1 cut(s) 1100
DpnI GATC 8 cut(s) 315, 448, 496, 779, 849, 1051, 1080, 1136
DpnII GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
DraIII CACNNNGTG 1 cut(s) 1447
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 4 cut(s) 596, 650, 914, 1109
EarI CTCTTC 4 cut(s) 596, 650, 914, 1109
Eco105I TACGTA 1 cut(s) 736
Eco24I GRGCYC 2 cut(s) 662, 1235
Eco47I GGWCC 2 cut(s) 602, 1016
Eco57I CTGAAG 1 cut(s) 1388
Eco88I CYCGRG 2 cut(s) 489, 1234
EcoT22I ATGCAT 1 cut(s) 1497
EcoT38I GRGCYC 2 cut(s) 662, 1235
EgeI GGCGCC 1 cut(s) 1100
EheI GGCGCC 1 cut(s) 1100
Esp3I CGTCTC 4 cut(s) 323, 966, 982, 1080
FaeI CATG 9 cut(s) 362, 377, 643, 808, 872, 1085, 1148, 1343, 1400
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 9 cut(s) 358, 373, 639, 804, 868, 1081, 1144, 1339, 1396
FauNDI CATATG 1 cut(s) 1485
FbaI TGATCA 2 cut(s) 847, 1078
Fnu4HI GCNGC 2 cut(s) 669, 1436
FokI GGATG 5 cut(s) 126, 188, 656, 896, 1275
FriOI GRGCYC 2 cut(s) 662, 1235
Fsp4HI GCNGC 2 cut(s) 669, 1436
FspBI CTAG 3 cut(s) 287, 414, 1212
GlaI GCGC 1 cut(s) 1100
GluI GCNGC 2 cut(s) 669, 1436
GsuI CTGGAG 1 cut(s) 758
HaeII RGCGCY 1 cut(s) 1102
HaeIII GGCC 2 cut(s) 565, 689
HapII CCGG 2 cut(s) 881, 1361
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 1101
Hin1I GRCGYC 2 cut(s) 975, 1099
Hin1II CATG 9 cut(s) 362, 377, 643, 808, 872, 1085, 1148, 1343, 1400
Hin6I GCGC 1 cut(s) 1099
HinP1I GCGC 1 cut(s) 1099
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 5 cut(s) 219, 347, 382, 1247, 1375
HpaII CCGG 2 cut(s) 881, 1361
HphI GGTGA 6 cut(s) 172, 283, 1088, 1142, 1435, 1501
Hpy166II GTNNAC 2 cut(s) 502, 1019
Hpy188I TCNGA 7 cut(s) 231, 255, 528, 952, 971, 1285, 1393
Hpy188III TCNNGA 5 cut(s) 216, 775, 913, 1316, 1510
Hpy8I GTNNAC 2 cut(s) 502, 1019
Hpy99I CGWCG 1 cut(s) 1465
HpyAV CCTTC 6 cut(s) 398, 569, 623, 947, 1072, 1089
HpyCH4III ACNGT 4 cut(s) 370, 602, 636, 1461
HpyCH4IV ACGT 3 cut(s) 735, 975, 1089
HpyCH4V TGCA 8 cut(s) 18, 373, 668, 936, 1429, 1435, 1483, 1495
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 762, 1067, 1435, 1513
HpyF3I CTNAG 6 cut(s) 426, 650, 903, 949, 1392, 1508
HpySE526I ACGT 3 cut(s) 735, 975, 1089
Hsp92I GRCGYC 2 cut(s) 975, 1099
Hsp92II CATG 9 cut(s) 362, 377, 643, 808, 872, 1085, 1148, 1343, 1400
HspAI GCGC 1 cut(s) 1099
KasI GGCGCC 1 cut(s) 1098
Ksp22I TGATCA 2 cut(s) 847, 1078
Kzo9I GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
LguI GCTCTTC 2 cut(s) 650, 914
LmnI GCTCC 5 cut(s) 242, 777, 1302, 1323, 1363
Lsp1109I GCAGC 2 cut(s) 680, 1447
LweI GCATC 5 cut(s) 810, 1253, 1276, 1416, 1482
MaeI CTAG 3 cut(s) 287, 414, 1212
MaeII ACGT 3 cut(s) 735, 975, 1089
MaeIII GTNAC 2 cut(s) 257, 289
MalI GATC 8 cut(s) 315, 448, 496, 779, 849, 1051, 1080, 1136
MboI GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 6 cut(s) 489, 662, 880, 1211, 1235, 1299
MlsI TGGCCA 1 cut(s) 565
MluCI AATT 9 cut(s) 115, 163, 187, 211, 325, 558, 1251, 1386, 1519
MluNI TGGCCA 1 cut(s) 565
Mly113I GGCGCC 1 cut(s) 1099
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 565
Mph1103I ATGCAT 1 cut(s) 1497
MroXI GAANNNNTTC 1 cut(s) 957
MscI TGGCCA 1 cut(s) 565
MseI TTAA 1 cut(s) 1518
MslI CAYNNNNRTG 3 cut(s) 368, 539, 1401
Msp20I TGGCCA 1 cut(s) 565
MspI CCGG 2 cut(s) 881, 1361
Mva1269I GAATGC 1 cut(s) 1495
MwoI GCNNNNNNNGC 5 cut(s) 15, 762, 1067, 1435, 1513
NarI GGCGCC 1 cut(s) 1099
NdeI CATATG 1 cut(s) 1485
NdeII GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
NlaIII CATG 9 cut(s) 362, 377, 643, 808, 872, 1085, 1148, 1343, 1400
NlaIV GGNNCC 4 cut(s) 496, 773, 879, 1100
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 1497
NspI RCATGY 1 cut(s) 362
NspV TTCGAA 1 cut(s) 556
PaqCI CACCTGC 1 cut(s) 1061
PciI ACATGT 1 cut(s) 358
PciSI GCTCTTC 2 cut(s) 650, 914
PcsI WCGNNNNNNNCGW 2 cut(s) 451, 1263
PctI GAATGC 1 cut(s) 1495
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 4 cut(s) 347, 382, 1247, 1375
PkrI GCNGC 2 cut(s) 670, 1437
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 1 cut(s) 213
PluTI GGCGCC 1 cut(s) 1102
PpsI GAGTC 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 736
PscI ACATGT 1 cut(s) 358
PspN4I GGNNCC 4 cut(s) 496, 773, 879, 1100
PspPI GGNCC 2 cut(s) 602, 1016
PsuI RGATCY 1 cut(s) 494
PvuI CGATCG 1 cut(s) 316
RsaI GTAC 1 cut(s) 930
RsaNI GTAC 1 cut(s) 929
RseI CAYNNNNRTG 3 cut(s) 368, 539, 1401
SapI GCTCTTC 2 cut(s) 650, 914
SaqAI TTAA 1 cut(s) 1518
SatI GCNGC 2 cut(s) 669, 1436
Sau3AI GATC 8 cut(s) 313, 446, 494, 777, 847, 1049, 1078, 1134
Sau96I GGNCC 2 cut(s) 602, 1016
ScaI AGTACT 1 cut(s) 930
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 6 cut(s) 489, 662, 880, 1211, 1235, 1299
SfaNI GCATC 5 cut(s) 810, 1253, 1276, 1416, 1482
SfoI GGCGCC 1 cut(s) 1100
SfuI TTCGAA 1 cut(s) 556
SinI GGWCC 2 cut(s) 602, 1016
SmiMI CAYNNNNRTG 3 cut(s) 368, 539, 1401
SnaBI TACGTA 1 cut(s) 736
Sse9I AATT 9 cut(s) 115, 163, 187, 211, 325, 558, 1251, 1386, 1519
SspDI GGCGCC 1 cut(s) 1098
SspMI CTAG 3 cut(s) 287, 414, 1212
TaaI ACNGT 4 cut(s) 370, 602, 636, 1461
TaiI ACGT 3 cut(s) 738, 978, 1092
TaqI TCGA 6 cut(s) 445, 556, 627, 1245, 1373, 1463
TasI AATT 9 cut(s) 115, 163, 187, 211, 325, 558, 1251, 1386, 1519
TatI WGTACW 1 cut(s) 928
TfiI GAWTC 4 cut(s) 347, 382, 1247, 1375
Tru1I TTAA 1 cut(s) 1518
Tru9I TTAA 1 cut(s) 1518
TscAI CASTG 3 cut(s) 349, 375, 612
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 668, 1435
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 7 cut(s) 61, 512, 628, 660, 910, 1236, 1328
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 3 cut(s) 349, 375, 612
VpaK11BI GGWCC 2 cut(s) 602, 1016
XapI RAATTY 3 cut(s) 115, 187, 558
XceI RCATGY 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 3 cut(s) 287, 414, 1212
ZraI GACGTC 1 cut(s) 976
ZrmI AGTACT 1 cut(s) 930
Zsp2I ATGCAT 1 cut(s) 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.