Rmu_ssc0000319.1_g000008

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000319.1
OG0013814
Physical Location & Seq
Forward (+)
40578 .. 42098
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000319.1_g000008.1.cds

Sequence Viewer

Length: 999 bp
atggaaaagcgatttcgaatttggccatacaaggaaggagagccaccactcttctacaacggtccagtgaatgacatatactccatcgaaggacagttcatggatgaacttaggaagagcccttttgcagcacaagaccctaatgaggccattgcgttctatcttcccattagtgttgtcagcattgtgagatacgtatatagaccttacaccagctactcacgcctacggctccagatcatcattgaggactacattagcatcatggcaaagagatacccatactggaatagaagcaatggggctgatcatttttttgtttcttgccatgattgggcaccggatgtttcagttggcaaccctaagctcttcaagaacttcattagagtactctgcaatgccaactcctcagaaggctttcaagcaatccgagacgtctccttacccgaaatcaaaatcccttttggcaagcttggtccacccctactcactcaacccccagaaaaccgatcaatcttcgccttcttcgcaggtggtgatcatggagacgtgagaaggcgcctcttccagcattggaaaaacaaagatggtgagatcaaagtccatgactacctccccaaaacccaaaactacacagagctaatgagcaagagcaagttttgtttgtgccctagtgggtatgaagttgcgagcccgagagtggtcgaatcaatttacgcaggatgcgttcctgtcatcatttcagatgcttatgtgctcccctttagtgatgttcttgattggagcaagttttcggttcatgtttcggtggcaaagataccggagctgaagtcgattctacaaacaatttctgagcatgaatatgtaaaaaaacaaaagggggtgatgcaagtgcagcgacacttcgtgctgaaccgaccgtcgaagccgtttgatatgttgcatatggtgatgcattcggtttggctcaggaggcttaatttgaggttgttggggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

332

Amino Acids

38.48

Weight (kDa)

9.18

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
AatII GACGTC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 2 cut(s) 337, 558
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 848
AcyI GRCGYC 2 cut(s) 435, 559
AdeI CACNNNGTG 1 cut(s) 907
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 145, 334, 700
AgsI TTSAA 2 cut(s) 373, 422
AjiI CACGTC 1 cut(s) 550
AluBI AGCT 5 cut(s) 216, 367, 472, 640, 826
AluI AGCT 5 cut(s) 216, 367, 472, 640, 826
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 3 cut(s) 426, 442, 540
Ama87I CYCGRG 1 cut(s) 694
AoxI GGCC 2 cut(s) 23, 147
ApeKI GCWGC 2 cut(s) 128, 895
ApoI RAATTY 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 417
AspLEI GCGC 1 cut(s) 561
AspS9I GGNCC 2 cut(s) 62, 476
AsuHPI GGTGA 4 cut(s) 548, 602, 895, 961
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 694
AvaII GGWCC 2 cut(s) 62, 476
BaeGI GKGCMC 2 cut(s) 340, 671
BalI TGGCCA 1 cut(s) 25
BanI GGYRCC 2 cut(s) 337, 558
BanII GRGCYC 2 cut(s) 122, 695
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 2 cut(s) 140, 907
BccI CCATC 2 cut(s) 92, 581
BceAI ACGGC 2 cut(s) 245, 913
BclI TGATCA 2 cut(s) 307, 538
BcoDI GTCTC 3 cut(s) 426, 442, 540
BfaI CTAG 1 cut(s) 672
BfoI RGCGCY 1 cut(s) 562
BfuAI ACCTGC 1 cut(s) 521
BisI GCNGC 2 cut(s) 129, 896
BlsI GCNGC 2 cut(s) 130, 897
BmcAI AGTACT 1 cut(s) 390
Bme18I GGWCC 2 cut(s) 62, 476
BmeT110I CYCGRG 1 cut(s) 694
BmgBI CACGTC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 62, 476
BmiI GGNNCC 3 cut(s) 233, 339, 560
BmsI GCATC 5 cut(s) 270, 713, 736, 876, 942
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 2 cut(s) 363, 968
Bpu14I TTCGAA 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 196
BsaHI GRCGYC 2 cut(s) 435, 559
BsaWI WCCGGW 2 cut(s) 340, 820
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 815, 845
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 334, 700
Bse1I ACTGG 2 cut(s) 65, 290
Bse3DI GCAATG 3 cut(s) 150, 304, 403
BseGI GGATG 3 cut(s) 109, 349, 728
BseLI CCNNNNNNNGG 3 cut(s) 145, 334, 700
BseMI GCAATG 3 cut(s) 150, 304, 403
BseMII CTCAG 3 cut(s) 423, 843, 982
BseNI ACTGG 2 cut(s) 65, 290
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 2 cut(s) 340, 671
BseXI GCAGC 2 cut(s) 140, 907
BsgI GTGCAG 1 cut(s) 914
Bsh1285I CGRYCG 1 cut(s) 920
BshFI GGCC 2 cut(s) 25, 149
BshNI GGYRCC 2 cut(s) 337, 558
BsiEI CGRYCG 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 694
BsiSI CCGG 2 cut(s) 341, 821
BslI CCNNNNNNNGG 3 cut(s) 145, 334, 700
BsmAI GTCTC 3 cut(s) 426, 442, 540
BsmBI CGTCTC 3 cut(s) 426, 442, 540
BsmI GAATGC 1 cut(s) 955
BsnI GGCC 2 cut(s) 25, 149
BsoBI CYCGRG 1 cut(s) 694
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 5 cut(s) 122, 340, 671, 695, 759
Bsp143I GATC 5 cut(s) 237, 307, 509, 538, 594
BspANI GGCC 2 cut(s) 25, 149
BspCNI CTCAG 3 cut(s) 422, 844, 981
BspLI GGNNCC 3 cut(s) 233, 339, 560
BspMI ACCTGC 1 cut(s) 521
BspQI GCTCTTC 2 cut(s) 110, 374
BspT104I TTCGAA 1 cut(s) 16
BspT107I GGYRCC 2 cut(s) 337, 558
BsrDI GCAATG 3 cut(s) 150, 304, 403
BsrI ACTGG 2 cut(s) 65, 290
BssMI GATC 5 cut(s) 237, 307, 509, 538, 594
BssNI GRCGYC 2 cut(s) 435, 559
Bst4CI ACNGT 3 cut(s) 62, 96, 921
Bst6I CTCTTC 4 cut(s) 56, 110, 374, 569
BstACI GRCGYC 2 cut(s) 435, 559
BstBAI YACGTR 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 470, 691
BstDEI CTNAG 5 cut(s) 110, 363, 409, 852, 968
BstF5I GGATG 3 cut(s) 109, 349, 728
BstH2I RGCGCY 1 cut(s) 562
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 5 cut(s) 240, 310, 512, 541, 597
BstMAI GTCTC 3 cut(s) 426, 442, 540
BstMBI GATC 5 cut(s) 237, 307, 509, 538, 594
BstMCI CGRYCG 1 cut(s) 920
BstMWI GCNNNNNNNGC 4 cut(s) 222, 527, 895, 973
BstSLI GKGCMC 2 cut(s) 340, 671
BstSNI TACGTA 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 140, 907
BsuRI GGCC 2 cut(s) 25, 149
BtrI CACGTC 1 cut(s) 550
BtsCI GGATG 3 cut(s) 109, 349, 728
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 470, 691
CfoI GCGC 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 62, 476
Csp6I GTAC 1 cut(s) 389
CviAII CATG 7 cut(s) 100, 265, 329, 542, 605, 800, 857
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 5 cut(s) 110, 363, 409, 852, 968
DinI GGCGCC 1 cut(s) 560
DpnI GATC 5 cut(s) 239, 309, 511, 540, 596
DpnII GATC 5 cut(s) 237, 307, 509, 538, 594
DraIII CACNNNGTG 1 cut(s) 907
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 4 cut(s) 56, 110, 374, 569
EarI CTCTTC 4 cut(s) 56, 110, 374, 569
Eco105I TACGTA 1 cut(s) 196
Eco24I GRGCYC 2 cut(s) 122, 695
Eco47I GGWCC 2 cut(s) 62, 476
Eco57I CTGAAG 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 694
EcoT22I ATGCAT 1 cut(s) 957
EcoT38I GRGCYC 2 cut(s) 122, 695
EgeI GGCGCC 1 cut(s) 560
EheI GGCGCC 1 cut(s) 560
Esp3I CGTCTC 3 cut(s) 426, 442, 540
FaeI CATG 7 cut(s) 103, 268, 332, 545, 608, 803, 860
FatI CATG 7 cut(s) 99, 264, 328, 541, 604, 799, 856
FauNDI CATATG 1 cut(s) 945
FbaI TGATCA 2 cut(s) 307, 538
Fnu4HI GCNGC 2 cut(s) 129, 896
FokI GGATG 3 cut(s) 116, 356, 735
FriOI GRGCYC 2 cut(s) 122, 695
Fsp4HI GCNGC 2 cut(s) 129, 896
FspBI CTAG 1 cut(s) 672
GlaI GCGC 1 cut(s) 560
GluI GCNGC 2 cut(s) 129, 896
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 562
HaeIII GGCC 2 cut(s) 25, 149
HapII CCGG 2 cut(s) 341, 821
HhaI GCGC 1 cut(s) 561
Hin1I GRCGYC 2 cut(s) 435, 559
Hin1II CATG 7 cut(s) 103, 268, 332, 545, 608, 803, 860
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 707, 835
HpaII CCGG 2 cut(s) 341, 821
HphI GGTGA 4 cut(s) 548, 602, 895, 961
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 4 cut(s) 412, 431, 745, 853
Hpy188III TCNNGA 4 cut(s) 235, 373, 776, 970
Hpy8I GTNNAC 1 cut(s) 479
Hpy99I CGWCG 1 cut(s) 925
HpyAV CCTTC 5 cut(s) 29, 83, 407, 532, 549
HpyCH4III ACNGT 3 cut(s) 62, 96, 921
HpyCH4IV ACGT 3 cut(s) 195, 435, 549
HpyCH4V TGCA 6 cut(s) 128, 396, 889, 895, 943, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 527, 895, 973
HpyF3I CTNAG 5 cut(s) 110, 363, 409, 852, 968
HpySE526I ACGT 3 cut(s) 195, 435, 549
Hsp92I GRCGYC 2 cut(s) 435, 559
Hsp92II CATG 7 cut(s) 103, 268, 332, 545, 608, 803, 860
HspAI GCGC 1 cut(s) 559
KasI GGCGCC 1 cut(s) 558
Ksp22I TGATCA 2 cut(s) 307, 538
Kzo9I GATC 5 cut(s) 237, 307, 509, 538, 594
LguI GCTCTTC 2 cut(s) 110, 374
LmnI GCTCC 4 cut(s) 237, 762, 783, 823
Lsp1109I GCAGC 2 cut(s) 140, 907
LweI GCATC 5 cut(s) 270, 713, 736, 876, 942
MaeI CTAG 1 cut(s) 672
MaeII ACGT 3 cut(s) 195, 435, 549
MalI GATC 5 cut(s) 239, 309, 511, 540, 596
MboI GATC 5 cut(s) 237, 307, 509, 538, 594
MboII GAAGA 7 cut(s) 43, 127, 155, 361, 508, 517, 556
MhlI GDGCHC 5 cut(s) 122, 340, 671, 695, 759
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 4 cut(s) 18, 711, 846, 979
MluNI TGGCCA 1 cut(s) 25
Mly113I GGCGCC 1 cut(s) 559
MnlI CCTC 7 cut(s) 139, 241, 418, 572, 623, 966, 978
Mox20I TGGCCA 1 cut(s) 25
Mph1103I ATGCAT 1 cut(s) 957
MroXI GAANNNNTTC 1 cut(s) 417
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 978
MslI CAYNNNNRTG 1 cut(s) 861
Msp20I TGGCCA 1 cut(s) 25
MspI CCGG 2 cut(s) 341, 821
Mva1269I GAATGC 1 cut(s) 955
MwoI GCNNNNNNNGC 4 cut(s) 222, 527, 895, 973
NarI GGCGCC 1 cut(s) 559
NdeI CATATG 1 cut(s) 945
NdeII GATC 5 cut(s) 237, 307, 509, 538, 594
NlaIII CATG 7 cut(s) 103, 268, 332, 545, 608, 803, 860
NlaIV GGNNCC 3 cut(s) 233, 339, 560
NsiI ATGCAT 1 cut(s) 957
NspV TTCGAA 1 cut(s) 16
PaqCI CACCTGC 1 cut(s) 521
PciSI GCTCTTC 2 cut(s) 110, 374
PcsI WCGNNNNNNNCGW 1 cut(s) 723
PctI GAATGC 1 cut(s) 955
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 707, 835
PkrI GCNGC 2 cut(s) 130, 897
PluTI GGCGCC 1 cut(s) 562
Ppu21I YACGTR 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 233, 339, 560
PspPI GGNCC 2 cut(s) 62, 476
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 861
SapI GCTCTTC 2 cut(s) 110, 374
SaqAI TTAA 1 cut(s) 978
SatI GCNGC 2 cut(s) 129, 896
Sau3AI GATC 5 cut(s) 237, 307, 509, 538, 594
Sau96I GGNCC 2 cut(s) 62, 476
ScaI AGTACT 1 cut(s) 390
SduI GDGCHC 5 cut(s) 122, 340, 671, 695, 759
SfaNI GCATC 5 cut(s) 270, 713, 736, 876, 942
SfoI GGCGCC 1 cut(s) 560
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 2 cut(s) 62, 476
SmiMI CAYNNNNRTG 1 cut(s) 861
SnaBI TACGTA 1 cut(s) 196
Sse9I AATT 4 cut(s) 18, 711, 846, 979
SspDI GGCGCC 1 cut(s) 558
SspMI CTAG 1 cut(s) 672
TaaI ACNGT 3 cut(s) 62, 96, 921
TaiI ACGT 3 cut(s) 198, 438, 552
TaqI TCGA 5 cut(s) 16, 87, 705, 833, 923
TasI AATT 4 cut(s) 18, 711, 846, 979
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 2 cut(s) 707, 835
Tru1I TTAA 1 cut(s) 978
Tru9I TTAA 1 cut(s) 978
TscAI CASTG 1 cut(s) 72
TseI GCWGC 2 cut(s) 128, 895
TspDTI ATGAA 6 cut(s) 88, 120, 370, 696, 788, 873
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 62, 476
XapI RAATTY 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 1 cut(s) 672
ZraI GACGTC 1 cut(s) 436
ZrmI AGTACT 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.