FvH4_2g28830

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013814
Physical Location & Seq
Forward (+)
22494119 .. 22497814
3696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28830.t1

Sequence Viewer

Length: 1524 bp
ATGGGTGCCTCCACCTCTTGTTATCTATATCCATCTCTCTTCCTCATCCTTTTCTTCTTTTCTATGAACCACCATTTCCATTACTTGCCATTCCCTTATTATAAACATTCCAAACTCTCTCTCCCCCACCATCCCATTTTCTCCCTCCCAAACAATTCCACACTCTCCCTCACCAATAATTCCACCCTCTCAAACAGTTCCAGACTCTCCCTTCCGGTAAACTCCAAACTCTCCATTCCAAGTAACTCCACACTATTCTCCAACCACACTCAAGCCTCCGATGATACACACCTTAACGATCGTCTCAATAATTCAAGCACAAATAGCACTGGATCTGCTCAACATGTCATTATCGTGCATGACAAGAATCCATTTGAGAAAATCGAAGAAGGGTTAGCTAGGGCGAGAGCTGCGATAAGAGAAGCAGGTCGATCAAAACGATACACACCATACAGAAAGGGAGGTTTTGTGCCCCGAGGATCCGTTTACATCAACCCTTATTCCTTTCATCAGAGCCACATAGAGATGGAGAAGCTATTTCGAATTTGGCCATACAAGGAAGGAGAGCCACCACTCTTCTACAACGGTCCAGTGAATGACATATACTCCATCGAAGGACAGTTCATGGATGAACTCAGGAAGAGCCCTTTTGCAGCAAAAGACCCTAACGAGGCCATTGCCTTCTATCTTCCCATCAGTGTTGTCAACATTGTGAGATACGTTTATAGGCCTTACACCACATACTCACGCCTACGGCTTCAGAACATCATCGAGGACTACATTGGCATCATGGCAAAGAGATACCCATACTGGAATAGAAGTAATGGGGGAGATCATTTTCTTGTTTCCTGCCATGATTGGGCACCGGATGTTTCAGTTGGAAACCCTAAGCTTTTCAAGAACTTCGTTAGAGTACTCTGCAATGCCAACTCCTCAGAAGGCTTTCAACCAATCCGAGACGTCTCCTTACCCGAAATCAAAATCCCTTTCGGCAAACTTGGTCCACCCCTCCTCAAGCACCCCCCAGAAAACCGATCAATCTTCGCCTTCTTCGCGGGTGGTGCTCATGGACATGTGAGAAGGCTTCTCTTCCAGCACTGGAAAAACAAAGACGGTGAGATCAAAGTCCATGACTACCTCCCCAAAACACAAAACTACACAGAGCTTATGAGCAAGAGTAAGTTTTGTTTGTGCCCTAGTGGGTACGAAGTTGCGAGCCCTAGGGTCGTCGAGTCAATTTACACGGGATGTGTTCCGGTTATCATTTCGGATTCTTATGTGCTCCCGTTCAGTGATGTTCTTGATTGGAGCAAGTTTTCGATTCATGTTTCGGTGGCAAAGATACCGGAGCTGAAGTCGATTCTGCAAACAATTTCTGAGCATGAGTATGTGAAAAAGCAAAAGAGGGTGATGCAAGTGCAGCGACACTTCGTGCTGAACCGGCCGTCGAGGCCGTTTGATATGTTGCATATGGTGATGCACTCAGTTTGGCTCAGGAGGCTTAATTTGAGGTTGTTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

508

Amino Acids

58.3

Weight (kDa)

9.51

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 161 - 457 2.2e-63 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
AatII GACGTC 1 cut(s) 963
Acc36I ACCTGC 1 cut(s) 416
AccB1I GGYRCC 2 cut(s) 5, 862
AccII CGCG 1 cut(s) 1055
AciI CCGC 1 cut(s) 1055
AclWI GGATC 3 cut(s) 340, 474, 487
AcoI YGGCCR 2 cut(s) 548, 1442
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 2 cut(s) 743, 1373
AcyI GRCGYC 1 cut(s) 960
AdeI CACNNNGTG 1 cut(s) 1432
AfaI GTAC 2 cut(s) 915, 1205
AfiI CCNNNNNNNGG 2 cut(s) 670, 859
AflIII ACRYGT 2 cut(s) 343, 1072
AgsI TTSAA 3 cut(s) 315, 898, 947
AluBI AGCT 6 cut(s) 398, 410, 535, 892, 1165, 1351
AluI AGCT 6 cut(s) 398, 410, 535, 892, 1165, 1351
Alw21I GWGCWC 2 cut(s) 1066, 1284
Alw26I GTCTC 3 cut(s) 308, 951, 967
AlwI GGATC 3 cut(s) 340, 474, 487
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 5 cut(s) 548, 672, 728, 1442, 1451
ApeKI GCWGC 3 cut(s) 410, 653, 1420
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 942
AspA2I CCTAGG 1 cut(s) 1220
AspS9I GGNCC 2 cut(s) 587, 1001
AsuHPI GGTGA 4 cut(s) 163, 1127, 1420, 1486
AsuII TTCGAA 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 2 cut(s) 587, 1001
AvrII CCTAGG 1 cut(s) 1220
BaeGI GKGCMC 3 cut(s) 474, 865, 1196
BalI TGGCCA 1 cut(s) 550
BamHI GGATCC 1 cut(s) 479
BanI GGYRCC 2 cut(s) 5, 862
BanII GRGCYC 2 cut(s) 647, 1220
Bbv12I GWGCWC 2 cut(s) 1066, 1284
BbvI GCAGC 3 cut(s) 397, 665, 1432
BccI CCATC 5 cut(s) 40, 138, 520, 617, 701
BceAI ACGGC 3 cut(s) 770, 1429, 1438
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BcoDI GTCTC 3 cut(s) 308, 951, 967
BfaI CTAG 3 cut(s) 399, 1197, 1221
BfuAI ACCTGC 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 1450
BisI GCNGC 3 cut(s) 411, 654, 1421
BlnI CCTAGG 1 cut(s) 1220
BlsI GCNGC 3 cut(s) 412, 655, 1422
BmcAI AGTACT 1 cut(s) 915
Bme18I GGWCC 2 cut(s) 587, 1001
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 587, 1001
BmiI GGNNCC 3 cut(s) 7, 481, 864
BmsI GCATC 3 cut(s) 795, 1401, 1467
Bpu10I CCTNAGC 2 cut(s) 888, 1493
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 2 cut(s) 255, 998
BsaHI GRCGYC 1 cut(s) 960
BsaJI CCNNGG 2 cut(s) 475, 1220
BsaWI WCCGGW 4 cut(s) 214, 865, 1255, 1345
BsaXI ACNNNNNCTCC 8 cut(s) 105, 135, 453, 483, 590, 620, 1340, 1370
Bsc4I CCNNNNNNNGG 2 cut(s) 670, 859
Bse118I RCCGGY 1 cut(s) 1440
Bse1I ACTGG 4 cut(s) 334, 590, 815, 1103
Bse3DI GCAATG 2 cut(s) 675, 928
BseDI CCNNGG 2 cut(s) 475, 1220
BseGI GGATG 5 cut(s) 45, 130, 634, 874, 1253
BseLI CCNNNNNNNGG 2 cut(s) 670, 859
BseMI GCAATG 2 cut(s) 675, 928
BseMII CTCAG 5 cut(s) 649, 948, 1368, 1497, 1507
BseNI ACTGG 4 cut(s) 334, 590, 815, 1103
BseRI GAGGAG 2 cut(s) 922, 1001
BseSI GKGCMC 3 cut(s) 474, 865, 1196
BseX3I CGGCCG 1 cut(s) 1442
BseXI GCAGC 3 cut(s) 397, 665, 1432
BsgI GTGCAG 1 cut(s) 1439
Bsh1236I CGCG 1 cut(s) 1055
Bsh1285I CGRYCG 2 cut(s) 301, 1445
BshFI GGCC 5 cut(s) 550, 674, 730, 1444, 1453
BshNI GGYRCC 2 cut(s) 5, 862
BsiEI CGRYCG 2 cut(s) 301, 1445
BsiHKAI GWGCWC 2 cut(s) 1066, 1284
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 5 cut(s) 215, 866, 1256, 1346, 1441
BslI CCNNNNNNNGG 2 cut(s) 670, 859
BsmAI GTCTC 3 cut(s) 308, 951, 967
BsmBI CGTCTC 3 cut(s) 308, 951, 967
BsnI GGCC 5 cut(s) 550, 674, 730, 1444, 1453
BsoBI CYCGRG 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 541
Bsp1286I GDGCHC 7 cut(s) 474, 647, 865, 1066, 1196, 1220, 1284
Bsp143I GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
BspACI CCGC 1 cut(s) 1055
BspANI GGCC 5 cut(s) 550, 674, 730, 1444, 1453
BspCNI CTCAG 5 cut(s) 648, 947, 1369, 1496, 1506
BspFNI CGCG 1 cut(s) 1055
BspLI GGNNCC 3 cut(s) 7, 481, 864
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 3 cut(s) 340, 474, 487
BspQI GCTCTTC 1 cut(s) 635
BspT104I TTCGAA 1 cut(s) 541
BspT107I GGYRCC 2 cut(s) 5, 862
BsrDI GCAATG 2 cut(s) 675, 928
BsrFI RCCGGY 1 cut(s) 1440
BsrI ACTGG 4 cut(s) 334, 590, 815, 1103
BssAI RCCGGY 1 cut(s) 1440
BssECI CCNNGG 2 cut(s) 475, 1220
BssMI GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
BssNI GRCGYC 1 cut(s) 960
BssT1I CCWWGG 1 cut(s) 1220
Bst4CI ACNGT 4 cut(s) 197, 587, 621, 1115
Bst6I CTCTTC 4 cut(s) 44, 581, 635, 1094
BstACI GRCGYC 1 cut(s) 960
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 1216
BstDEI CTNAG 6 cut(s) 635, 888, 934, 1377, 1483, 1493
BstF5I GGATG 5 cut(s) 45, 130, 634, 874, 1253
BstFNI CGCG 1 cut(s) 1055
BstKTI GATC 7 cut(s) 301, 335, 434, 482, 835, 1037, 1122
BstMAI GTCTC 3 cut(s) 308, 951, 967
BstMBI GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
BstMCI CGRYCG 2 cut(s) 301, 1445
BstMWI GCNNNNNNNGC 8 cut(s) 324, 410, 1052, 1061, 1420, 1441, 1450, 1498
BstNSI RCATGY 2 cut(s) 347, 1076
BstSLI GKGCMC 3 cut(s) 474, 865, 1196
BstUI CGCG 1 cut(s) 1055
BstV1I GCAGC 3 cut(s) 397, 665, 1432
BstX2I RGATCY 2 cut(s) 332, 479
BstYI RGATCY 2 cut(s) 332, 479
BstZI CGGCCG 1 cut(s) 1442
BsuRI GGCC 5 cut(s) 550, 674, 730, 1444, 1453
BtsCI GGATG 5 cut(s) 45, 130, 634, 874, 1253
BtsIMutI CAGTG 5 cut(s) 327, 597, 703, 1096, 1297
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 1 cut(s) 1216
Cfr10I RCCGGY 1 cut(s) 1440
Cfr13I GGNCC 2 cut(s) 587, 1001
Csp6I GTAC 2 cut(s) 914, 1204
CviQI GTAC 2 cut(s) 914, 1204
DdeI CTNAG 6 cut(s) 635, 888, 934, 1377, 1483, 1493
DpnI GATC 7 cut(s) 300, 334, 433, 481, 834, 1036, 1121
DpnII GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
DraIII CACNNNGTG 1 cut(s) 1432
EaeI YGGCCR 2 cut(s) 548, 1442
EagI CGGCCG 1 cut(s) 1442
Eam1104I CTCTTC 4 cut(s) 44, 581, 635, 1094
EarI CTCTTC 4 cut(s) 44, 581, 635, 1094
EclXI CGGCCG 1 cut(s) 1442
Eco130I CCWWGG 1 cut(s) 1220
Eco147I AGGCCT 1 cut(s) 730
Eco24I GRGCYC 2 cut(s) 647, 1220
Eco47I GGWCC 2 cut(s) 587, 1001
Eco52I CGGCCG 1 cut(s) 1442
Eco57I CTGAAG 2 cut(s) 743, 1373
Eco88I CYCGRG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 1220
EcoT38I GRGCYC 2 cut(s) 647, 1220
ErhI CCWWGG 1 cut(s) 1220
Esp3I CGTCTC 3 cut(s) 308, 951, 967
FauI CCCGC 1 cut(s) 1048
FauNDI CATATG 1 cut(s) 1470
Fnu4HI GCNGC 3 cut(s) 411, 654, 1421
FokI GGATG 5 cut(s) 32, 117, 641, 881, 1260
FriOI GRGCYC 2 cut(s) 647, 1220
Fsp4HI GCNGC 3 cut(s) 411, 654, 1421
FspBI CTAG 3 cut(s) 399, 1197, 1221
GluI GCNGC 3 cut(s) 411, 654, 1421
HaeIII GGCC 5 cut(s) 550, 674, 730, 1444, 1453
HapII CCGG 5 cut(s) 215, 866, 1256, 1346, 1441
Hin1I GRCGYC 1 cut(s) 960
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 890
HinfI GANTC 6 cut(s) 204, 367, 1232, 1271, 1321, 1360
HpaII CCGG 5 cut(s) 215, 866, 1256, 1346, 1441
HphI GGTGA 4 cut(s) 163, 1127, 1420, 1486
Hpy166II GTNNAC 4 cut(s) 220, 487, 706, 1004
Hpy188I TCNGA 7 cut(s) 280, 513, 762, 937, 956, 1270, 1378
Hpy188III TCNNGA 5 cut(s) 201, 637, 898, 1301, 1495
Hpy8I GTNNAC 4 cut(s) 220, 487, 706, 1004
Hpy99I CGWCG 2 cut(s) 1232, 1450
HpyAV CCTTC 8 cut(s) 221, 383, 554, 608, 691, 932, 1057, 1074
HpyCH4III ACNGT 4 cut(s) 197, 587, 621, 1115
HpyCH4IV ACGT 2 cut(s) 720, 960
HpyCH4V TGCA 8 cut(s) 358, 653, 921, 1366, 1414, 1420, 1468, 1480
HpyF10VI GCNNNNNNNGC 8 cut(s) 324, 410, 1052, 1061, 1420, 1441, 1450, 1498
HpyF3I CTNAG 6 cut(s) 635, 888, 934, 1377, 1483, 1493
HpySE526I ACGT 2 cut(s) 720, 960
Hsp92I GRCGYC 1 cut(s) 960
Kzo9I GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 3 cut(s) 1287, 1308, 1348
Lsp1109I GCAGC 3 cut(s) 397, 665, 1432
LweI GCATC 3 cut(s) 795, 1401, 1467
MaeI CTAG 3 cut(s) 399, 1197, 1221
MaeII ACGT 2 cut(s) 720, 960
MaeIII GTNAC 1 cut(s) 242
MalI GATC 7 cut(s) 300, 334, 433, 481, 834, 1036, 1121
MboI GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
MboII GAAGA 9 cut(s) 31, 46, 398, 568, 652, 680, 1033, 1042, 1081
MflI RGATCY 2 cut(s) 332, 479
MhlI GDGCHC 7 cut(s) 474, 647, 865, 1066, 1196, 1220, 1284
MlsI TGGCCA 1 cut(s) 550
MluCI AATT 7 cut(s) 154, 178, 310, 543, 1236, 1371, 1504
MluNI TGGCCA 1 cut(s) 550
MlyI GAGTC 2 cut(s) 198, 1241
MmeI TCCRAC 2 cut(s) 285, 859
Mox20I TGGCCA 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 942
MscI TGGCCA 1 cut(s) 550
MseI TTAA 2 cut(s) 294, 1503
MslI CAYNNNNRTG 4 cut(s) 353, 524, 1071, 1386
Msp20I TGGCCA 1 cut(s) 550
MspI CCGG 5 cut(s) 215, 866, 1256, 1346, 1441
MvnI CGCG 1 cut(s) 1055
MwoI GCNNNNNNNGC 8 cut(s) 324, 410, 1052, 1061, 1420, 1441, 1450, 1498
NdeI CATATG 1 cut(s) 1470
NdeII GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
NlaIV GGNNCC 3 cut(s) 7, 481, 864
NspI RCATGY 2 cut(s) 347, 1076
NspV TTCGAA 1 cut(s) 541
PceI AGGCCT 1 cut(s) 730
PciI ACATGT 2 cut(s) 343, 1072
PciSI GCTCTTC 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 4 cut(s) 367, 1271, 1321, 1360
PkrI GCNGC 3 cut(s) 412, 655, 1422
Ple19I CGATCG 1 cut(s) 301
PleI GAGTC 2 cut(s) 198, 1240
PpsI GAGTC 2 cut(s) 198, 1240
PscI ACATGT 2 cut(s) 343, 1072
PsiI TTATAA 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 7, 481, 864
PspPI GGNCC 2 cut(s) 587, 1001
PsuI RGATCY 2 cut(s) 332, 479
PvuI CGATCG 1 cut(s) 301
RsaI GTAC 2 cut(s) 915, 1205
RsaNI GTAC 2 cut(s) 914, 1204
RseI CAYNNNNRTG 4 cut(s) 353, 524, 1071, 1386
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 2 cut(s) 294, 1503
SatI GCNGC 3 cut(s) 411, 654, 1421
Sau3AI GATC 7 cut(s) 298, 332, 431, 479, 832, 1034, 1119
Sau96I GGNCC 2 cut(s) 587, 1001
ScaI AGTACT 1 cut(s) 915
SchI GAGTC 2 cut(s) 198, 1241
SduI GDGCHC 7 cut(s) 474, 647, 865, 1066, 1196, 1220, 1284
SfaNI GCATC 3 cut(s) 795, 1401, 1467
SfiI GGCCNNNNNGGCC 1 cut(s) 1450
SfuI TTCGAA 1 cut(s) 541
SinI GGWCC 2 cut(s) 587, 1001
SmiMI CAYNNNNRTG 4 cut(s) 353, 524, 1071, 1386
SmlI CTYRAG 2 cut(s) 270, 1013
SmoI CTYRAG 2 cut(s) 270, 1013
Sse9I AATT 7 cut(s) 154, 178, 310, 543, 1236, 1371, 1504
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 1 cut(s) 1055
SspMI CTAG 3 cut(s) 399, 1197, 1221
StuI AGGCCT 1 cut(s) 730
StyI CCWWGG 1 cut(s) 1220
TaaI ACNGT 4 cut(s) 197, 587, 621, 1115
TaiI ACGT 2 cut(s) 723, 963
TaqI TCGA 9 cut(s) 384, 430, 541, 612, 771, 1230, 1319, 1358, 1448
TasI AATT 7 cut(s) 154, 178, 310, 543, 1236, 1371, 1504
TatI WGTACW 1 cut(s) 913
TfiI GAWTC 4 cut(s) 367, 1271, 1321, 1360
Tru1I TTAA 2 cut(s) 294, 1503
Tru9I TTAA 2 cut(s) 294, 1503
TscAI CASTG 5 cut(s) 334, 597, 703, 1103, 1297
TseI GCWGC 3 cut(s) 410, 653, 1420
TspDTI ATGAA 5 cut(s) 80, 497, 613, 645, 1313
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 5 cut(s) 334, 597, 703, 1103, 1297
VpaK11BI GGWCC 2 cut(s) 587, 1001
XapI RAATTY 1 cut(s) 543
XceI RCATGY 2 cut(s) 347, 1076
XmaJI CCTAGG 1 cut(s) 1220
XmnI GAANNNNTTC 1 cut(s) 942
XspI CTAG 3 cut(s) 399, 1197, 1221
ZraI GACGTC 1 cut(s) 961
ZrmI AGTACT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.