pycom08g12920

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013814
Physical Location & Seq
Reverse (-)
11476180 .. 11481306
5127 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g12920.4

Sequence Viewer

Length: 1509 bp
ATGGCTGGCTCTGCTTATACCAACACTTGTTTGCTATACCCTTCTCTTTTCCTCATCCTTTTCTTCTCTTTCATGAACCACCAGTTCCACTATTTCCCATTTCCTCACAACTCCACAGTTCCAAACCACAGACAGGTCTCCGGCACGTACTGCAACGACGATCTCCAAAATGCCAGCAAAAATAGTACTACACTTGATCATGTGCCTACTTATCGTTCTGTGTATGTACGTTTTAGGAGCCACATAGAGATGGAAAAAAGATTTCGAATTTGGTCGTACGAGGAAGGAGAGCCTCCAGTCTTCCACAAAGGGCCGATGAACGACATTTACTCCATTGAAGGTCAGTTCATGGATGAGTTCGAGTTGAGTGGGAAAAGCCCATTTGTAGCGAAAGACCCCGACGAGGCTGTCGCGTTTTCTCTTCCAATCAGTGTTGTCAACATTGTGAGATTCGTCTACAAGCCTTACACCACCTACTCTCGTGTCCGGCTCCAGAACATTGTCGAGGACTACATCAGCATCATATCGAAGAAATATCCATACTGGAATAGAAGCAATGGAGCTGACCATTTTCTGGTTTCTTGTCATGATTGGGCACCTGATATTTCGGCTGGACACCCTAAGCTTTTCAAGAAGTTCATTAGAGTACTCTGCAATGCAAATTGTTCAGAAGGTTTCCAACCAGTCCGAGATGTATCCCTGCCAGAAATCAAACTCCCTTTTGGAAAGGTAGGCCCTCCCCTCCTTACCCATTCCCCTAAAAACCGTTCAATCTTTGCTTTCTTCGCTGGTGGTGGTCATGGAGACGTAAGAAAGATACTATTCAAGCACTGGAAAAACAAAGACAAGGAAATCCAAGTCCATAACTACCTCCCCAAAACCCTAAACTACACACACCTAATGGCGCAGAGCAAGTTTTGCTTGTGCCCTAGCGGGTATGAAGTTGCAAGCCCTAGAGTGGTTGAGGCCATATATGCAGGCTGTGTCCCAGTGATCATTTCTGATTCCTATGCGTTGCCGTTCAGTGACGTACTTAATTGGTCTAAGTTTTCAGTTCATGTTCCGGTGGCAAGGCTACCGGAACTGAAGGCAATTTTGCAATCAGTTTCCGAGCATGAATATTTGAGAAAGCAAAAGAGGGTCATGCAAGTGCAGCGCCATTTTGTGATCAATAGGCCTGCTAAGCCATTTGATATGTTGTATATGGTGCTGCATTCATGCAAAACAGAACCCTGTATCATCCTTTCAAACACACATTATGCAGATACAATCTCTCCATCCAAAAAACCAATATTCCTCTGCCTCTCACAGGATCTTCACAAAGAATTTCCTTCTTTAAGGAGCTGTAGCACACCCTCATGCTGGTATAACAACTTCTTATGGGATTACCCTTCGTGGGATTTACCGTCAACACTCTCATTCAACATTGGCTTCAGGCCTTTAATATTTACAAAAAACAGAATGAATTCTTCTAGGCAACAAAAGAATGATACTCTTGACAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

503

Amino Acids

57.99

Weight (kDa)

9.07

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 595
AccB7I CCANNNNNTGG 1 cut(s) 574
AccI GTMKAC 1 cut(s) 456
AccII CGCG 1 cut(s) 413
AciI CCGC 1 cut(s) 933
AclWI GGATC 1 cut(s) 1320
AcsI RAATTY 3 cut(s) 267, 1325, 1465
AcuI CTGAAG 2 cut(s) 1106, 1417
AfaI GTAC 6 cut(s) 149, 187, 228, 278, 648, 1032
AfiI CCNNNNNNNGG 7 cut(s) 133, 403, 574, 958, 1309, 1362, 1396
AgsI TTSAA 6 cut(s) 338, 631, 771, 826, 1248, 1423
AluBI AGCT 3 cut(s) 563, 625, 1344
AluI AGCT 3 cut(s) 563, 625, 1344
Alw26I GTCTC 2 cut(s) 142, 798
AlwI GGATC 1 cut(s) 1320
AoxI GGCC 5 cut(s) 311, 733, 966, 1175, 1436
ApeKI GCWGC 2 cut(s) 1153, 1210
ApoI RAATTY 3 cut(s) 267, 1325, 1465
Asp700I GAANNNNTTC 1 cut(s) 1465
AspLEI GCGC 2 cut(s) 907, 1158
AspS9I GGNCC 2 cut(s) 311, 734
AsuII TTCGAA 1 cut(s) 265
BaeGI GKGCMC 2 cut(s) 598, 929
BanI GGYRCC 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 1358, 1390
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 1165, 1197
BccI CCATC 2 cut(s) 244, 1285
BceAI ACGGC 1 cut(s) 1003
BciVI GTATCC 1 cut(s) 706
BclI TGATCA 3 cut(s) 196, 993, 1167
BcoDI GTCTC 2 cut(s) 142, 798
BfaI CTAG 3 cut(s) 930, 954, 1473
BfmI CTRYAG 1 cut(s) 1345
BfoI RGCGCY 1 cut(s) 1159
BfuI GTATCC 1 cut(s) 706
BisI GCNGC 2 cut(s) 1154, 1211
BlpI GCTNAGC 1 cut(s) 1182
BlsI GCNGC 2 cut(s) 1155, 1212
BmcAI AGTACT 2 cut(s) 187, 648
BmgT120I GGNCC 2 cut(s) 311, 734
BmiI GGNNCC 3 cut(s) 239, 491, 597
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 2 cut(s) 279, 476
Bpu10I CCTNAGC 1 cut(s) 621
Bpu1102I GCTNAGC 1 cut(s) 1182
Bpu14I TTCGAA 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 142
BsaWI WCCGGW 2 cut(s) 1063, 1078
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 1258, 1288
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 403, 574, 958, 1309, 1362, 1396
Bse1I ACTGG 6 cut(s) 82, 296, 548, 683, 836, 989
Bse3DI GCAATG 2 cut(s) 562, 661
BseGI GGATG 4 cut(s) 54, 358, 1239, 1277
BseLI CCNNNNNNNGG 7 cut(s) 133, 403, 574, 958, 1309, 1362, 1396
BseMI GCAATG 2 cut(s) 562, 661
BseNI ACTGG 6 cut(s) 82, 296, 548, 683, 836, 989
BseSI GKGCMC 2 cut(s) 598, 929
BseXI GCAGC 2 cut(s) 1165, 1197
BsgI GTGCAG 1 cut(s) 1172
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 5 cut(s) 313, 735, 968, 1177, 1438
BshNI GGYRCC 1 cut(s) 595
BsiSI CCGG 4 cut(s) 141, 487, 1064, 1079
BsiWI CGTACG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 971
BslI CCNNNNNNNGG 7 cut(s) 133, 403, 574, 958, 1309, 1362, 1396
BsmAI GTCTC 2 cut(s) 142, 798
BsmBI CGTCTC 1 cut(s) 798
BsmFI GGGAC 1 cut(s) 971
BsmI GAATGC 1 cut(s) 1213
BsnI GGCC 5 cut(s) 313, 735, 968, 1177, 1438
Bso31I GGTCTC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 598, 929
Bsp143I GATC 5 cut(s) 160, 196, 993, 1167, 1312
Bsp1720I GCTNAGC 1 cut(s) 1182
BspACI CCGC 1 cut(s) 933
BspANI GGCC 5 cut(s) 313, 735, 968, 1177, 1438
BspFNI CGCG 1 cut(s) 413
BspHI TCATGA 2 cut(s) 72, 586
BspLI GGNNCC 3 cut(s) 239, 491, 597
BspPI GGATC 1 cut(s) 1320
BspT104I TTCGAA 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 2 cut(s) 562, 661
BsrI ACTGG 6 cut(s) 82, 296, 548, 683, 836, 989
BssMI GATC 5 cut(s) 160, 196, 993, 1167, 1312
BssSI CACGAG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 480
Bst4CI ACNGT 3 cut(s) 118, 767, 1407
Bst6I CTCTTC 1 cut(s) 426
BstAPI GCANNNNNTGC 2 cut(s) 150, 918
BstBAI YACGTR 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 265
BstC8I GCNNGC 5 cut(s) 7, 175, 949, 979, 1179
BstDEI CTNAG 3 cut(s) 621, 1044, 1182
BstENI CCTNNNNNAGG 1 cut(s) 1307
BstF5I GGATG 4 cut(s) 54, 358, 1239, 1277
BstFNI CGCG 1 cut(s) 413
BstH2I RGCGCY 1 cut(s) 1159
BstHHI GCGC 2 cut(s) 907, 1158
BstKTI GATC 5 cut(s) 163, 199, 996, 1170, 1315
BstMAI GTCTC 2 cut(s) 142, 798
BstMBI GATC 5 cut(s) 160, 196, 993, 1167, 1312
BstMWI GCNNNNNNNGC 7 cut(s) 11, 150, 785, 918, 974, 1153, 1183
BstSFI CTRYAG 1 cut(s) 1345
BstSLI GKGCMC 2 cut(s) 598, 929
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 1165, 1197
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 5 cut(s) 313, 735, 968, 1177, 1438
BtsCI GGATG 4 cut(s) 54, 358, 1239, 1277
BtsIMutI CAGTG 4 cut(s) 436, 829, 996, 1030
Cac8I GCNNGC 5 cut(s) 7, 175, 949, 979, 1179
CciI TCATGA 2 cut(s) 72, 586
CfoI GCGC 2 cut(s) 907, 1158
Cfr13I GGNCC 2 cut(s) 311, 734
Csp6I GTAC 6 cut(s) 148, 186, 227, 277, 647, 1031
CviQI GTAC 6 cut(s) 148, 186, 227, 277, 647, 1031
DdeI CTNAG 3 cut(s) 621, 1044, 1182
DpnI GATC 5 cut(s) 162, 198, 995, 1169, 1314
DpnII GATC 5 cut(s) 160, 196, 993, 1167, 1312
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco147I AGGCCT 2 cut(s) 1177, 1438
Eco31I GGTCTC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 1106, 1417
EcoNI CCTNNNNNAGG 1 cut(s) 1307
EcoO109I RGGNCCY 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 1465
Esp3I CGTCTC 1 cut(s) 798
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 971
FauI CCCGC 1 cut(s) 926
FbaI TGATCA 3 cut(s) 196, 993, 1167
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 1154, 1211
FokI GGATG 4 cut(s) 41, 365, 1226, 1264
Fsp4HI GCNGC 2 cut(s) 1154, 1211
FspBI CTAG 3 cut(s) 930, 954, 1473
GlaI GCGC 2 cut(s) 906, 1157
GluI GCNGC 2 cut(s) 1154, 1211
GsuI CTGGAG 2 cut(s) 279, 476
HaeII RGCGCY 1 cut(s) 1159
HaeIII GGCC 5 cut(s) 313, 735, 968, 1177, 1438
HapII CCGG 4 cut(s) 141, 487, 1064, 1079
HhaI GCGC 2 cut(s) 907, 1158
Hin6I GCGC 2 cut(s) 905, 1156
HinP1I GCGC 2 cut(s) 905, 1156
HincII GTYRAC 2 cut(s) 439, 1410
HindII GTYRAC 2 cut(s) 439, 1410
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 2 cut(s) 450, 1004
HpaII CCGG 4 cut(s) 141, 487, 1064, 1079
Hpy166II GTNNAC 3 cut(s) 439, 457, 1410
Hpy188I TCNGA 4 cut(s) 670, 689, 1003, 1111
Hpy188III TCNNGA 5 cut(s) 73, 493, 587, 631, 1496
Hpy8I GTNNAC 3 cut(s) 439, 457, 1410
Hpy99I CGWCG 2 cut(s) 161, 404
HpyAV CCTTC 7 cut(s) 51, 278, 332, 665, 1081, 1341, 1401
HpyCH4III ACNGT 3 cut(s) 118, 767, 1407
HpyCH4IV ACGT 4 cut(s) 146, 229, 807, 1029
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 150, 785, 918, 974, 1153, 1183
HpyF3I CTNAG 3 cut(s) 621, 1044, 1182
HpySE526I ACGT 4 cut(s) 146, 229, 807, 1029
HspAI GCGC 2 cut(s) 905, 1156
Ksp22I TGATCA 3 cut(s) 196, 993, 1167
Kzo9I GATC 5 cut(s) 160, 196, 993, 1167, 1312
LmnI GCTCC 4 cut(s) 237, 495, 560, 1341
Lsp1109I GCAGC 2 cut(s) 1165, 1197
LweI GCATC 1 cut(s) 528
MaeI CTAG 3 cut(s) 930, 954, 1473
MaeII ACGT 4 cut(s) 146, 229, 807, 1029
MaeIII GTNAC 1 cut(s) 1025
MalI GATC 5 cut(s) 162, 198, 995, 1169, 1314
MboI GATC 5 cut(s) 160, 196, 993, 1167, 1312
MboII GAAGA 7 cut(s) 55, 292, 413, 541, 775, 1307, 1461
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 2 cut(s) 598, 929
MluCI AATT 6 cut(s) 267, 661, 1036, 1092, 1325, 1465
MmeI TCCRAC 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 1465
MseI TTAA 3 cut(s) 1035, 1337, 1442
MslI CAYNNNNRTG 3 cut(s) 248, 1148, 1357
MspI CCGG 4 cut(s) 141, 487, 1064, 1079
Mva1269I GAATGC 1 cut(s) 1213
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 7 cut(s) 11, 150, 785, 918, 974, 1153, 1183
NdeII GATC 5 cut(s) 160, 196, 993, 1167, 1312
NlaIV GGNNCC 3 cut(s) 239, 491, 597
NmuCI GTSAC 1 cut(s) 1025
NspV TTCGAA 1 cut(s) 265
PagI TCATGA 2 cut(s) 72, 586
PceI AGGCCT 2 cut(s) 1177, 1438
PctI GAATGC 1 cut(s) 1213
PdmI GAANNNNTTC 1 cut(s) 1465
PfeI GAWTC 2 cut(s) 450, 1004
Pfl23II CGTACG 1 cut(s) 276
PflMI CCANNNNNTGG 1 cut(s) 574
PkrI GCNGC 2 cut(s) 1155, 1212
Ppu21I YACGTR 1 cut(s) 147
PspLI CGTACG 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 239, 491, 597
PspPI GGNCC 2 cut(s) 311, 734
PsrI GAACNNNNNNTAC 2 cut(s) 311, 343
PsuI RGATCY 1 cut(s) 1312
RsaI GTAC 6 cut(s) 149, 187, 228, 278, 648, 1032
RsaNI GTAC 6 cut(s) 148, 186, 227, 277, 647, 1031
RseI CAYNNNNRTG 3 cut(s) 248, 1148, 1357
SaqAI TTAA 3 cut(s) 1035, 1337, 1442
SatI GCNGC 2 cut(s) 1154, 1211
Sau3AI GATC 5 cut(s) 160, 196, 993, 1167, 1312
Sau96I GGNCC 2 cut(s) 311, 734
ScaI AGTACT 2 cut(s) 187, 648
SduI GDGCHC 2 cut(s) 598, 929
SfaNI GCATC 1 cut(s) 528
SfcI CTRYAG 1 cut(s) 1345
SfuI TTCGAA 1 cut(s) 265
SmiMI CAYNNNNRTG 3 cut(s) 248, 1148, 1357
Sse9I AATT 6 cut(s) 267, 661, 1036, 1092, 1325, 1465
SseBI AGGCCT 2 cut(s) 1177, 1438
SsiI CCGC 1 cut(s) 933
SspI AATATT 3 cut(s) 1121, 1293, 1446
SspMI CTAG 3 cut(s) 930, 954, 1473
StuI AGGCCT 2 cut(s) 1177, 1438
TaaI ACNGT 3 cut(s) 118, 767, 1407
TaiI ACGT 4 cut(s) 149, 232, 810, 1032
TaqI TCGA 4 cut(s) 265, 360, 504, 527
TasI AATT 6 cut(s) 267, 661, 1036, 1092, 1325, 1465
TatI WGTACW 2 cut(s) 185, 646
TfiI GAWTC 2 cut(s) 450, 1004
Tru1I TTAA 3 cut(s) 1035, 1337, 1442
Tru9I TTAA 3 cut(s) 1035, 1337, 1442
TscAI CASTG 4 cut(s) 436, 836, 996, 1030
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 2 cut(s) 1153, 1210
Tsp45I GTSAC 1 cut(s) 1025
TspRI CASTG 4 cut(s) 436, 836, 996, 1030
Van91I CCANNNNNTGG 1 cut(s) 574
XagI CCTNNNNNAGG 1 cut(s) 1307
XapI RAATTY 3 cut(s) 267, 1325, 1465
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 1465
XspI CTAG 3 cut(s) 930, 954, 1473
ZrmI AGTACT 2 cut(s) 187, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.