MD08G1156800.v1.1

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013814
Physical Location & Seq
Reverse (-)
17445442 .. 17449446
4005 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1156800.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGCAAGTGAAGAAGAACCAATTTGAGAAATTGGAAGATGGATTGGCAAGAGCAAGAGCTGCAATACGAGAAGCAGCTCGATCAAGGAGCTATATGTCATACAAGGAGGATTTTGTTCCAACAGGATCGGTTTACATCAACCCTTATTCCTTTCATCAGAGCCACATAGAGATGGAAAAAAGATTTCGAATTTGGTCGTACGAGGAAGGAGAGCCACCACTCTTCCACAAAGGGCCGATGAACGACATTTACTCCATTGAAGGTCAGTTCATGGATGAGCTTGAGTTGAGTGGGAAAAGCCCATTTGTAGCGAAAGACCCCGACGAGGCTGTCGCGTTTTCTCTTCCAATCAGTGTTGTCAACGTTGTGAGATTCGTCTACAGGCCTTACACCACCTACTCTCGTGTCCGGCTCCAGAACATTGTCGAGGACTACATCAGCATCATATCGAAGAAATATCCATACTGGAATAGAAGTAATGGAGCTGACCATTTTCTGGTTTCTTGTCATGATTGGGCACCTGATATTTCGGCTGGACACCCTAAGCCTTTCAAGAACTTCATTAGAGTACTCTGCAATGCAAATTGTTCAGAAGGTTTCCAACCAGTCCGAGATGTATCCCTGCCCGAAATCAAACTCCCTTTTGGAAAGTTAGGCCCTCCCCTCCTTACCCATTCCCCTAAAAACCATTCAATCTTTGCTTTCTTCACTGGTGGTGGTCATGGCGACGTAAGAAAGATACTATTCAAGCACTGGAAAAACAAAGACAAGGAAATCCAAGTCCATAACTACCTCCCCAAAACCCTAAACTACACACACCTAATGGCGCAGAGCAAGTTTTGCTTGTGCCCTAGCGGGTATGAAGTTGCAAGCCCTAGAGTGGTTGAGGCCATATATGCAGGCTGTGTCCCAGTGATCATTTCTGATTCCTATGCGTTGCCGTTCAGTGACGTACATGATTGGTCTAAGTTTTCAGTTCATGTTCCGGTGGCAAGGATACCGGAACTGAAGGCAATTTTGCAATCAGTTTCCGACCATGAATATTTGAGAAAGCAAAAGAGGGTCATGCAAGTGCAGCGCCATTTTGTGATCAATAGGCCTGCTAAGCCATTTGATATGTTGCATATGGTGCTGCATTCAGTGTGGCTTCGGAGGCTTAATCTGAGGCTGTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

393

Amino Acids

45.31

Weight (kDa)

9.32

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 59 - 343 3.3e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 496
AccI GTMKAC 1 cut(s) 378
AccII CGCG 1 cut(s) 335
AciI CCGC 1 cut(s) 855
AclI AACGTT 1 cut(s) 363
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 1028
AfaI GTAC 3 cut(s) 200, 570, 954
AfiI CCNNNNNNNGG 3 cut(s) 325, 496, 880
AgsI TTSAA 5 cut(s) 260, 553, 693, 748, 1174
AluBI AGCT 5 cut(s) 59, 77, 90, 280, 485
AluI AGCT 5 cut(s) 59, 77, 90, 280, 485
AlwI GGATC 1 cut(s) 133
AoxI GGCC 5 cut(s) 233, 383, 655, 888, 1097
ApeKI GCWGC 4 cut(s) 59, 74, 1075, 1132
ApoI RAATTY 1 cut(s) 189
AspLEI GCGC 2 cut(s) 829, 1080
AspS9I GGNCC 2 cut(s) 233, 656
AsuII TTCGAA 1 cut(s) 187
BaeGI GKGCMC 2 cut(s) 520, 851
BanI GGYRCC 1 cut(s) 517
BauI CACGAG 1 cut(s) 402
BbvI GCAGC 4 cut(s) 46, 86, 1087, 1119
BccI CCATC 2 cut(s) 32, 166
BceAI ACGGC 1 cut(s) 925
BciVI GTATCC 2 cut(s) 628, 990
BclI TGATCA 2 cut(s) 915, 1089
BfaI CTAG 2 cut(s) 852, 876
BfmI CTRYAG 1 cut(s) 379
BfoI RGCGCY 1 cut(s) 1081
BfuI GTATCC 2 cut(s) 628, 990
BisI GCNGC 4 cut(s) 60, 75, 1076, 1133
BlpI GCTNAGC 1 cut(s) 1104
BlsI GCNGC 4 cut(s) 61, 76, 1077, 1134
BmcAI AGTACT 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 233, 656
BmiI GGNNCC 2 cut(s) 413, 519
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 905
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 1104
Bpu14I TTCGAA 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 302
BsaWI WCCGGW 2 cut(s) 985, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 496, 880
Bse1I ACTGG 5 cut(s) 470, 605, 715, 758, 911
Bse3DI GCAATG 1 cut(s) 583
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 3 cut(s) 325, 496, 880
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 1154
BseNI ACTGG 5 cut(s) 470, 605, 715, 758, 911
BseSI GKGCMC 2 cut(s) 520, 851
BseXI GCAGC 4 cut(s) 46, 86, 1087, 1119
BsgI GTGCAG 1 cut(s) 1094
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 5 cut(s) 235, 385, 657, 890, 1099
BshNI GGYRCC 1 cut(s) 517
BsiSI CCGG 3 cut(s) 409, 986, 1001
BsiWI CGTACG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 3 cut(s) 325, 496, 880
BsmFI GGGAC 1 cut(s) 893
BsmI GAATGC 1 cut(s) 1135
BsnI GGCC 5 cut(s) 235, 385, 657, 890, 1099
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 520, 851
Bsp143I GATC 4 cut(s) 80, 125, 915, 1089
Bsp1720I GCTNAGC 1 cut(s) 1104
BspACI CCGC 1 cut(s) 855
BspANI GGCC 5 cut(s) 235, 385, 657, 890, 1099
BspCNI CTCAG 1 cut(s) 1155
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 413, 519
BspPI GGATC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 583
BsrI ACTGG 5 cut(s) 470, 605, 715, 758, 911
BssMI GATC 4 cut(s) 80, 125, 915, 1089
BssSI CACGAG 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 402
Bst6I CTCTTC 2 cut(s) 227, 348
BstAPI GCANNNNNTGC 3 cut(s) 59, 840, 1129
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 871, 901, 1101
BstDEI CTNAG 4 cut(s) 543, 966, 1104, 1163
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 1081
BstHHI GCGC 2 cut(s) 829, 1080
BstKTI GATC 4 cut(s) 83, 128, 918, 1092
BstMBI GATC 4 cut(s) 80, 125, 915, 1089
BstMWI GCNNNNNNNGC 7 cut(s) 59, 840, 896, 1075, 1105, 1129, 1153
BstSFI CTRYAG 1 cut(s) 379
BstSLI GKGCMC 2 cut(s) 520, 851
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 4 cut(s) 46, 86, 1087, 1119
BsuI GTATCC 2 cut(s) 628, 990
BsuRI GGCC 5 cut(s) 235, 385, 657, 890, 1099
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 6 cut(s) 358, 708, 751, 918, 952, 1146
Cac8I GCNNGC 3 cut(s) 871, 901, 1101
CciI TCATGA 1 cut(s) 508
CfoI GCGC 2 cut(s) 829, 1080
Cfr13I GGNCC 2 cut(s) 233, 656
Csp6I GTAC 3 cut(s) 199, 569, 953
CviAII CATG 7 cut(s) 271, 509, 722, 956, 980, 1037, 1066
CviQI GTAC 3 cut(s) 199, 569, 953
DdeI CTNAG 4 cut(s) 543, 966, 1104, 1163
DpnI GATC 4 cut(s) 82, 127, 917, 1091
DpnII GATC 4 cut(s) 80, 125, 915, 1089
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
Eam1104I CTCTTC 2 cut(s) 227, 348
EarI CTCTTC 2 cut(s) 227, 348
Eco147I AGGCCT 2 cut(s) 385, 1099
Eco57I CTGAAG 1 cut(s) 1028
EcoO109I RGGNCCY 1 cut(s) 656
FaeI CATG 7 cut(s) 274, 512, 725, 959, 983, 1040, 1069
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FaqI GGGAC 1 cut(s) 893
FatI CATG 7 cut(s) 270, 508, 721, 955, 979, 1036, 1065
FauI CCCGC 1 cut(s) 848
FauNDI CATATG 1 cut(s) 1125
FbaI TGATCA 2 cut(s) 915, 1089
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 4 cut(s) 60, 75, 1076, 1133
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 4 cut(s) 60, 75, 1076, 1133
FspBI CTAG 2 cut(s) 852, 876
GlaI GCGC 2 cut(s) 828, 1079
GluI GCNGC 4 cut(s) 60, 75, 1076, 1133
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 1081
HaeIII GGCC 5 cut(s) 235, 385, 657, 890, 1099
HapII CCGG 3 cut(s) 409, 986, 1001
HhaI GCGC 2 cut(s) 829, 1080
Hin1II CATG 7 cut(s) 274, 512, 725, 959, 983, 1040, 1069
Hin6I GCGC 2 cut(s) 827, 1078
HinP1I GCGC 2 cut(s) 827, 1078
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 2 cut(s) 372, 926
HpaII CCGG 3 cut(s) 409, 986, 1001
Hpy166II GTNNAC 3 cut(s) 133, 361, 379
Hpy188I TCNGA 7 cut(s) 159, 592, 611, 925, 1033, 1152, 1164
Hpy188III TCNNGA 3 cut(s) 415, 509, 553
Hpy8I GTNNAC 3 cut(s) 133, 361, 379
Hpy99I CGWCG 2 cut(s) 326, 731
HpyAV CCTTC 4 cut(s) 200, 254, 587, 1003
HpyCH4IV ACGT 3 cut(s) 363, 729, 951
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 840, 896, 1075, 1105, 1129, 1153
HpyF3I CTNAG 4 cut(s) 543, 966, 1104, 1163
HpySE526I ACGT 3 cut(s) 363, 729, 951
Hsp92II CATG 7 cut(s) 274, 512, 725, 959, 983, 1040, 1069
HspAI GCGC 2 cut(s) 827, 1078
Ksp22I TGATCA 2 cut(s) 915, 1089
Kzo9I GATC 4 cut(s) 80, 125, 915, 1089
LmnI GCTCC 3 cut(s) 87, 417, 482
Lsp1109I GCAGC 4 cut(s) 46, 86, 1087, 1119
LweI GCATC 1 cut(s) 450
MaeI CTAG 2 cut(s) 852, 876
MaeII ACGT 3 cut(s) 363, 729, 951
MaeIII GTNAC 1 cut(s) 947
MalI GATC 4 cut(s) 82, 127, 917, 1091
MboI GATC 4 cut(s) 80, 125, 915, 1089
MboII GAAGA 7 cut(s) 22, 25, 47, 214, 335, 463, 697
MhlI GDGCHC 2 cut(s) 520, 851
MluCI AATT 5 cut(s) 20, 29, 189, 583, 1014
MmeI TCCRAC 3 cut(s) 143, 625, 1056
MseI TTAA 1 cut(s) 1158
MslI CAYNNNNRTG 2 cut(s) 170, 1070
MspI CCGG 3 cut(s) 409, 986, 1001
Mva1269I GAATGC 1 cut(s) 1135
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 7 cut(s) 59, 840, 896, 1075, 1105, 1129, 1153
NdeI CATATG 1 cut(s) 1125
NdeII GATC 4 cut(s) 80, 125, 915, 1089
NlaIII CATG 7 cut(s) 274, 512, 725, 959, 983, 1040, 1069
NlaIV GGNNCC 2 cut(s) 413, 519
NmuCI GTSAC 1 cut(s) 947
NspV TTCGAA 1 cut(s) 187
PagI TCATGA 1 cut(s) 508
PceI AGGCCT 2 cut(s) 385, 1099
PctI GAATGC 1 cut(s) 1135
PfeI GAWTC 2 cut(s) 372, 926
Pfl23II CGTACG 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 496
PkrI GCNGC 4 cut(s) 61, 76, 1077, 1134
Psp1406I AACGTT 1 cut(s) 363
PspLI CGTACG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 413, 519
PspPI GGNCC 2 cut(s) 233, 656
PsrI GAACNNNNNNTAC 2 cut(s) 233, 265
RsaI GTAC 3 cut(s) 200, 570, 954
RsaNI GTAC 3 cut(s) 199, 569, 953
RseI CAYNNNNRTG 2 cut(s) 170, 1070
SaqAI TTAA 1 cut(s) 1158
SatI GCNGC 4 cut(s) 60, 75, 1076, 1133
Sau3AI GATC 4 cut(s) 80, 125, 915, 1089
Sau96I GGNCC 2 cut(s) 233, 656
ScaI AGTACT 1 cut(s) 570
SduI GDGCHC 2 cut(s) 520, 851
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 187
SmiMI CAYNNNNRTG 2 cut(s) 170, 1070
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 5 cut(s) 20, 29, 189, 583, 1014
SseBI AGGCCT 2 cut(s) 385, 1099
SsiI CCGC 1 cut(s) 855
SspI AATATT 1 cut(s) 1043
SspMI CTAG 2 cut(s) 852, 876
StuI AGGCCT 2 cut(s) 385, 1099
TaiI ACGT 3 cut(s) 366, 732, 954
TaqI TCGA 4 cut(s) 79, 187, 426, 449
TasI AATT 5 cut(s) 20, 29, 189, 583, 1014
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 2 cut(s) 372, 926
Tru1I TTAA 1 cut(s) 1158
Tru9I TTAA 1 cut(s) 1158
TscAI CASTG 6 cut(s) 358, 715, 758, 918, 952, 1146
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 4 cut(s) 59, 74, 1075, 1132
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 7 cut(s) 143, 254, 259, 550, 876, 968, 1053
TspRI CASTG 6 cut(s) 358, 715, 758, 918, 952, 1146
Van91I CCANNNNNTGG 1 cut(s) 496
XapI RAATTY 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 2 cut(s) 852, 876
ZrmI AGTACT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.