RLG00000011580

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013814
Physical Location & Seq
Reverse (-)
10679372 .. 10680887
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011580

Sequence Viewer

Length: 996 bp
ATGGAAAAGCGATTTCGAATTTGGCCATACAAGGAAGGAGAGCCACCACTCTTCTACAACGGTCCAGTGAATGACATATACTCCATCGAAGGACAGTTCATGGATGAACTTAGGAAGAGCCCTTTTGCAGCACAAGACCCTAATGAGGCCATTGCGTTCTATCTTCCCATCAGTGTTGTCAGCATTGTGAGATACGTATATAGACCTTACACCAGCTACTCACGCCTACGGCTCCAGATCATCATTGAGGACTACATTAGCATCATGGCAAAGAGATACCCATACTGGAATAGAAGCAATGGGGCTGATCATTTTTTTGTTTCTTGCCATGATTGGGCACCGGATGTTTCAGTTGGCAACCCTAAGCTCTTCAAGAACTTCATTAGAGTACTCTGCAATGCCAACTCCTCAGAAGGCTTTCAAGCAATCCGAGACGTCTCCTTACCCGAAATCAAAATCCCTTTTGGCAAGCTTGGTCCACCCCTACTCAATCCCCCAGAAAACCGATCAATCTTCGCCTTCTTCGCAGGTGGTGATCATGGAGACGTGAGAAGGCGCCTCTTCCAGCATTGGAAAAACAAAGATGGTGAGATCAAAGTCCATGACTACCTCCCCAAAACCCAAAACTATACAGAGCTAATGAGCAAGAGCAAGTTTTGTTTGTGCCCTAGTGGGTATGAAGTTGCGAGCCCGAGAGTGGTCGAATCAATTTACGCAGGATGCGTTCCTGTCATCATTTCAGATGCTTATGTGCTCCCCTTTAGTGATGTTCTTGATTGGAGCAAGTTTTCGGTTCATGTTTCGGTGGCAAAGATACCGGAGCTGAAGTCGATTCTACAAACAATTTCTGAGCATGAGTACGTAAAAAAACAAAAGGGGGTGATGCAAGTGCAGCGACACTTCGTGCTGAACCGACCGTCGAAGCCGTTTGATATGTTGCATATGGTGATGCATTCGGTTTGGCTCAGGAGGCTTAATTTGAGGTTGTTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

332

Amino Acids

38.36

Weight (kDa)

9.18

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 2 - 281 6.4e-63 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
AatII GACGTC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 518
AccB1I GGYRCC 2 cut(s) 337, 555
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 845
AcyI GRCGYC 2 cut(s) 435, 556
AdeI CACNNNGTG 1 cut(s) 904
AfaI GTAC 2 cut(s) 390, 860
AfiI CCNNNNNNNGG 3 cut(s) 145, 334, 697
AgsI TTSAA 2 cut(s) 373, 422
AjiI CACGTC 1 cut(s) 547
AluBI AGCT 5 cut(s) 216, 367, 472, 637, 823
AluI AGCT 5 cut(s) 216, 367, 472, 637, 823
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 3 cut(s) 426, 442, 537
Ama87I CYCGRG 1 cut(s) 691
AoxI GGCC 2 cut(s) 23, 147
ApeKI GCWGC 2 cut(s) 128, 892
ApoI RAATTY 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 417
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 2 cut(s) 62, 476
AsuHPI GGTGA 4 cut(s) 545, 599, 892, 958
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 691
AvaII GGWCC 2 cut(s) 62, 476
BaeGI GKGCMC 2 cut(s) 340, 668
BalI TGGCCA 1 cut(s) 25
BanI GGYRCC 2 cut(s) 337, 555
BanII GRGCYC 2 cut(s) 122, 692
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 2 cut(s) 140, 904
BccI CCATC 3 cut(s) 92, 176, 578
BceAI ACGGC 2 cut(s) 245, 910
BclI TGATCA 2 cut(s) 307, 535
BcoDI GTCTC 3 cut(s) 426, 442, 537
BfaI CTAG 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 559
BfuAI ACCTGC 1 cut(s) 518
BisI GCNGC 2 cut(s) 129, 893
BlsI GCNGC 2 cut(s) 130, 894
BmcAI AGTACT 1 cut(s) 390
Bme18I GGWCC 2 cut(s) 62, 476
BmeT110I CYCGRG 1 cut(s) 691
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 62, 476
BmiI GGNNCC 3 cut(s) 233, 339, 557
BmsI GCATC 5 cut(s) 270, 710, 733, 873, 939
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 2 cut(s) 363, 965
Bpu14I TTCGAA 1 cut(s) 16
BsaAI YACGTR 2 cut(s) 196, 862
BsaHI GRCGYC 2 cut(s) 435, 556
BsaWI WCCGGW 2 cut(s) 340, 817
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 812, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 334, 697
Bse1I ACTGG 2 cut(s) 65, 290
Bse3DI GCAATG 3 cut(s) 150, 304, 403
BseGI GGATG 3 cut(s) 109, 349, 725
BseLI CCNNNNNNNGG 3 cut(s) 145, 334, 697
BseMI GCAATG 3 cut(s) 150, 304, 403
BseMII CTCAG 3 cut(s) 423, 840, 979
BseNI ACTGG 2 cut(s) 65, 290
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 2 cut(s) 340, 668
BseXI GCAGC 2 cut(s) 140, 904
BsgI GTGCAG 1 cut(s) 911
Bsh1285I CGRYCG 1 cut(s) 917
BshFI GGCC 2 cut(s) 25, 149
BshNI GGYRCC 2 cut(s) 337, 555
BsiEI CGRYCG 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 756
BsiHKCI CYCGRG 1 cut(s) 691
BsiSI CCGG 2 cut(s) 341, 818
BslI CCNNNNNNNGG 3 cut(s) 145, 334, 697
BsmAI GTCTC 3 cut(s) 426, 442, 537
BsmBI CGTCTC 3 cut(s) 426, 442, 537
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 2 cut(s) 25, 149
BsoBI CYCGRG 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 5 cut(s) 122, 340, 668, 692, 756
Bsp143I GATC 5 cut(s) 237, 307, 506, 535, 591
BspANI GGCC 2 cut(s) 25, 149
BspCNI CTCAG 3 cut(s) 422, 841, 978
BspLI GGNNCC 3 cut(s) 233, 339, 557
BspMI ACCTGC 1 cut(s) 518
BspQI GCTCTTC 2 cut(s) 110, 374
BspT104I TTCGAA 1 cut(s) 16
BspT107I GGYRCC 2 cut(s) 337, 555
BsrDI GCAATG 3 cut(s) 150, 304, 403
BsrI ACTGG 2 cut(s) 65, 290
BssMI GATC 5 cut(s) 237, 307, 506, 535, 591
BssNI GRCGYC 2 cut(s) 435, 556
Bst4CI ACNGT 3 cut(s) 62, 96, 918
Bst6I CTCTTC 4 cut(s) 56, 110, 374, 566
BstACI GRCGYC 2 cut(s) 435, 556
BstBAI YACGTR 2 cut(s) 196, 862
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 470, 688
BstDEI CTNAG 5 cut(s) 110, 363, 409, 849, 965
BstF5I GGATG 3 cut(s) 109, 349, 725
BstH2I RGCGCY 1 cut(s) 559
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 5 cut(s) 240, 310, 509, 538, 594
BstMAI GTCTC 3 cut(s) 426, 442, 537
BstMBI GATC 5 cut(s) 237, 307, 506, 535, 591
BstMCI CGRYCG 1 cut(s) 917
BstMWI GCNNNNNNNGC 4 cut(s) 222, 524, 892, 970
BstSLI GKGCMC 2 cut(s) 340, 668
BstSNI TACGTA 2 cut(s) 196, 862
BstV1I GCAGC 2 cut(s) 140, 904
BsuRI GGCC 2 cut(s) 25, 149
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 3 cut(s) 109, 349, 725
BtsIMutI CAGTG 2 cut(s) 72, 178
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 2 cut(s) 470, 688
CfoI GCGC 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 62, 476
Csp6I GTAC 2 cut(s) 389, 859
CviAII CATG 7 cut(s) 100, 265, 329, 539, 602, 797, 854
CviQI GTAC 2 cut(s) 389, 859
DdeI CTNAG 5 cut(s) 110, 363, 409, 849, 965
DinI GGCGCC 1 cut(s) 557
DpnI GATC 5 cut(s) 239, 309, 508, 537, 593
DpnII GATC 5 cut(s) 237, 307, 506, 535, 591
DraIII CACNNNGTG 1 cut(s) 904
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 4 cut(s) 56, 110, 374, 566
EarI CTCTTC 4 cut(s) 56, 110, 374, 566
Eco105I TACGTA 2 cut(s) 196, 862
Eco24I GRGCYC 2 cut(s) 122, 692
Eco47I GGWCC 2 cut(s) 62, 476
Eco57I CTGAAG 1 cut(s) 845
Eco88I CYCGRG 1 cut(s) 691
EcoT22I ATGCAT 1 cut(s) 954
EcoT38I GRGCYC 2 cut(s) 122, 692
EgeI GGCGCC 1 cut(s) 557
EheI GGCGCC 1 cut(s) 557
Esp3I CGTCTC 3 cut(s) 426, 442, 537
FaeI CATG 7 cut(s) 103, 268, 332, 542, 605, 800, 857
FatI CATG 7 cut(s) 99, 264, 328, 538, 601, 796, 853
FauNDI CATATG 1 cut(s) 942
FbaI TGATCA 2 cut(s) 307, 535
Fnu4HI GCNGC 2 cut(s) 129, 893
FokI GGATG 3 cut(s) 116, 356, 732
FriOI GRGCYC 2 cut(s) 122, 692
Fsp4HI GCNGC 2 cut(s) 129, 893
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 557
GluI GCNGC 2 cut(s) 129, 893
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 559
HaeIII GGCC 2 cut(s) 25, 149
HapII CCGG 2 cut(s) 341, 818
HhaI GCGC 1 cut(s) 558
Hin1I GRCGYC 2 cut(s) 435, 556
Hin1II CATG 7 cut(s) 103, 268, 332, 542, 605, 800, 857
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 704, 832
HpaII CCGG 2 cut(s) 341, 818
HphI GGTGA 4 cut(s) 545, 599, 892, 958
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 4 cut(s) 412, 431, 742, 850
Hpy188III TCNNGA 4 cut(s) 235, 373, 773, 967
Hpy8I GTNNAC 1 cut(s) 479
Hpy99I CGWCG 1 cut(s) 922
HpyAV CCTTC 5 cut(s) 29, 83, 407, 529, 546
HpyCH4III ACNGT 3 cut(s) 62, 96, 918
HpyCH4IV ACGT 4 cut(s) 195, 435, 546, 861
HpyCH4V TGCA 6 cut(s) 128, 396, 886, 892, 940, 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 524, 892, 970
HpyF3I CTNAG 5 cut(s) 110, 363, 409, 849, 965
HpySE526I ACGT 4 cut(s) 195, 435, 546, 861
Hsp92I GRCGYC 2 cut(s) 435, 556
Hsp92II CATG 7 cut(s) 103, 268, 332, 542, 605, 800, 857
HspAI GCGC 1 cut(s) 556
KasI GGCGCC 1 cut(s) 555
Ksp22I TGATCA 2 cut(s) 307, 535
Kzo9I GATC 5 cut(s) 237, 307, 506, 535, 591
LguI GCTCTTC 2 cut(s) 110, 374
LmnI GCTCC 4 cut(s) 237, 759, 780, 820
Lsp1109I GCAGC 2 cut(s) 140, 904
LweI GCATC 5 cut(s) 270, 710, 733, 873, 939
MaeI CTAG 1 cut(s) 669
MaeII ACGT 4 cut(s) 195, 435, 546, 861
MalI GATC 5 cut(s) 239, 309, 508, 537, 593
MboI GATC 5 cut(s) 237, 307, 506, 535, 591
MboII GAAGA 7 cut(s) 43, 127, 155, 361, 505, 514, 553
MhlI GDGCHC 5 cut(s) 122, 340, 668, 692, 756
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 4 cut(s) 18, 708, 843, 976
MluNI TGGCCA 1 cut(s) 25
Mly113I GGCGCC 1 cut(s) 556
MnlI CCTC 7 cut(s) 139, 241, 418, 569, 620, 963, 975
Mox20I TGGCCA 1 cut(s) 25
Mph1103I ATGCAT 1 cut(s) 954
MroXI GAANNNNTTC 1 cut(s) 417
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 975
Msp20I TGGCCA 1 cut(s) 25
MspI CCGG 2 cut(s) 341, 818
Mva1269I GAATGC 1 cut(s) 952
MwoI GCNNNNNNNGC 4 cut(s) 222, 524, 892, 970
NarI GGCGCC 1 cut(s) 556
NdeI CATATG 1 cut(s) 942
NdeII GATC 5 cut(s) 237, 307, 506, 535, 591
NlaIII CATG 7 cut(s) 103, 268, 332, 542, 605, 800, 857
NlaIV GGNNCC 3 cut(s) 233, 339, 557
NsiI ATGCAT 1 cut(s) 954
NspV TTCGAA 1 cut(s) 16
PaqCI CACCTGC 1 cut(s) 518
PciSI GCTCTTC 2 cut(s) 110, 374
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PctI GAATGC 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 704, 832
PkrI GCNGC 2 cut(s) 130, 894
PluTI GGCGCC 1 cut(s) 559
Ppu21I YACGTR 2 cut(s) 196, 862
PspN4I GGNNCC 3 cut(s) 233, 339, 557
PspPI GGNCC 2 cut(s) 62, 476
RsaI GTAC 2 cut(s) 390, 860
RsaNI GTAC 2 cut(s) 389, 859
SapI GCTCTTC 2 cut(s) 110, 374
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 2 cut(s) 129, 893
Sau3AI GATC 5 cut(s) 237, 307, 506, 535, 591
Sau96I GGNCC 2 cut(s) 62, 476
ScaI AGTACT 1 cut(s) 390
SduI GDGCHC 5 cut(s) 122, 340, 668, 692, 756
SfaNI GCATC 5 cut(s) 270, 710, 733, 873, 939
SfoI GGCGCC 1 cut(s) 557
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 2 cut(s) 62, 476
SnaBI TACGTA 2 cut(s) 196, 862
Sse9I AATT 4 cut(s) 18, 708, 843, 976
SspDI GGCGCC 1 cut(s) 555
SspMI CTAG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 62, 96, 918
TaiI ACGT 4 cut(s) 198, 438, 549, 864
TaqI TCGA 5 cut(s) 16, 87, 702, 830, 920
TasI AATT 4 cut(s) 18, 708, 843, 976
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 2 cut(s) 704, 832
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TscAI CASTG 2 cut(s) 72, 178
TseI GCWGC 2 cut(s) 128, 892
TspDTI ATGAA 5 cut(s) 88, 120, 370, 693, 785
TspRI CASTG 2 cut(s) 72, 178
VpaK11BI GGWCC 2 cut(s) 62, 476
XapI RAATTY 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 1 cut(s) 669
ZraI GACGTC 1 cut(s) 436
ZrmI AGTACT 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.