MD15G1127600.v1.1

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013814
Physical Location & Seq
Reverse (-)
9248728 .. 9250694
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1127600.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGTGGAGCCACATAGAGATGGAGAAAAGATTTCGAATTTGGTCGTACAAGGAAGGAGAGCCACCACTCTTCCACCAAGGGCCAATGAACGACATTTACTCCATTGAAGGCCAGTTCATGGATGAATTTGAGTTGAGTGGGAATAGCCCATTTGTGGCGAAAGACCCTGACGAGGCCATCGCGTTTTTTCTTCCCATCAGTGTTGTCAACATTGTGAGATACGTCTACAGGCCTTACACCAGCTACTCTCGTGTCCGGCTCCAGAACATTGTCGAGGACTACATCAGAATCATATCGAAGATATATCCATACTGGAATAGAAGCAATGGAGCTGACCATTTTCTGGTCTCTTGTCATGATTGGGCACCTGATATTTCGGCTGGACACCCTAAAATTTTGAAGAACTTAATTAGAGTACTCTGCAATGCGAATTGTTCAGAAGGTTTCCAACCAGTCCGAGATGTCCCCCTCCCCGAAATCAAAATCCCGTTTGGAAAGTTAGGTTCTCCCCTCCTTACCCATCCCCCTAAGAACCGTTCAATCTTTGCTTTCTTTGCCGGTGGTGATCATGGAGACGTAAGAAGGGTACTATTCAAGCACTGGAAAAACAAAGACAAGGAAATCCAAGTCCATGACTACCTCCCCAAAACCTCAAACTACACACATCTAATGGCGCAGACCAAGTTTTGCATGTGCCCTAGCGGGTATGAAGTTGCAAGCCCTAGAGTGGTTGAGGCCATATATGCAGGCTGTGTCCCAGTGATCATTTCTGATTCCTATGCGTTGCCGTTCAGTGATGTGCTTGATTGGTCTAAGTTTTCGGTTCATGTTCCGGTGGCAAGGATACCAGAACTGAAGGCAATTTTGCAATCAGTTTCTGAGCATGAATATGTGAGAAAGCAAAAGAGGGTCATGCAAGTGCAGCGCCATTTTGTGATCAATAGACCTGCTAAGCCATTTGATATGTTGCATATGGTGATGCATTCAGTGTGGCTCCGGAGGCTTAATCTGAGGCTGGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

342

Amino Acids

39.63

Weight (kDa)

9.15

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 8 - 292 1.7e-62 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11130 AT5G11130
fragaria_vesca FvH4_2g28830
malus_domestica MD08G1156800.v1.1 MD15G1127600.v1.1
prunus_persica Prupe.1G483100_v2.0.a1
pyrus_communis pycom08g12920 pycom15g11490
rosa_chinensis RchiOBHm_Chr6g0297581
rosa_laevigata RLG00000011580
rosa_multiflora Rmu_ssc0000319.1_g000008
rosa_roxburghii Rroxscaffold_7G00170340
rosa_rugosa Rorug06G0273900 Rorug06G0274000
rosa_samantha Rh6AG384800 Rh6CG398700
rosa_wichuraiana Rw6G033520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 955
AccB1I GGYRCC 1 cut(s) 364
AccB7I CCANNNNNTGG 2 cut(s) 118, 343
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 182
AccIII TCCGGA 1 cut(s) 996
AciI CCGC 1 cut(s) 702
AcsI RAATTY 3 cut(s) 36, 125, 393
AcuI CTGAAG 1 cut(s) 875
AfaI GTAC 3 cut(s) 47, 417, 588
AfiI CCNNNNNNNGG 5 cut(s) 118, 154, 172, 343, 727
AgsI TTSAA 4 cut(s) 107, 400, 540, 595
AluBI AGCT 2 cut(s) 243, 332
AluI AGCT 2 cut(s) 243, 332
Alw26I GTCTC 2 cut(s) 352, 567
AlwNI CAGNNNCTG 1 cut(s) 878
Aor13HI TCCGGA 1 cut(s) 996
AoxI GGCC 5 cut(s) 80, 109, 174, 230, 735
ApeKI GCWGC 1 cut(s) 922
ApoI RAATTY 3 cut(s) 36, 125, 393
AspLEI GCGC 2 cut(s) 676, 927
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 575, 988
AsuII TTCGAA 1 cut(s) 34
BaeGI GKGCMC 2 cut(s) 367, 698
BanI GGYRCC 1 cut(s) 364
BauI CACGAG 1 cut(s) 249
BbvI GCAGC 1 cut(s) 934
BccI CCATC 4 cut(s) 13, 185, 203, 528
BceAI ACGGC 1 cut(s) 772
BciVI GTATCC 1 cut(s) 837
BclI TGATCA 3 cut(s) 565, 762, 936
BcoDI GTCTC 2 cut(s) 352, 567
BfaI CTAG 2 cut(s) 699, 723
BfmI CTRYAG 1 cut(s) 226
BfoI RGCGCY 1 cut(s) 928
BfuAI ACCTGC 1 cut(s) 955
BfuI GTATCC 1 cut(s) 837
BisI GCNGC 1 cut(s) 923
BlpI GCTNAGC 1 cut(s) 951
BlsI GCNGC 1 cut(s) 924
BmcAI AGTACT 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 4 cut(s) 8, 260, 366, 995
BmrI ACTGGG 1 cut(s) 752
BmsI GCATC 1 cut(s) 969
BmuI ACTGGG 1 cut(s) 752
BpmI CTGGAG 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 951
Bpu14I TTCGAA 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 76
BsaWI WCCGGW 2 cut(s) 832, 996
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 154, 172, 343, 727
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 5 cut(s) 112, 317, 452, 605, 758
Bse3DI GCAATG 2 cut(s) 331, 430
BseAI TCCGGA 1 cut(s) 996
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 127, 520
BseLI CCNNNNNNNGG 5 cut(s) 118, 154, 172, 343, 727
BseMI GCAATG 2 cut(s) 331, 430
BseMII CTCAG 2 cut(s) 870, 1001
BseNI ACTGG 5 cut(s) 112, 317, 452, 605, 758
BseSI GKGCMC 2 cut(s) 367, 698
BseXI GCAGC 1 cut(s) 934
BsgI GTGCAG 1 cut(s) 941
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 5 cut(s) 82, 111, 176, 232, 737
BshNI GGYRCC 1 cut(s) 364
BsiSI CCGG 4 cut(s) 256, 558, 833, 997
BslFI GGGAC 2 cut(s) 449, 740
BslI CCNNNNNNNGG 5 cut(s) 118, 154, 172, 343, 727
BsmAI GTCTC 2 cut(s) 352, 567
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 449, 740
BsmI GAATGC 1 cut(s) 982
BsnI GGCC 5 cut(s) 82, 111, 176, 232, 737
Bso31I GGTCTC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 367, 698
Bsp13I TCCGGA 1 cut(s) 996
Bsp143I GATC 3 cut(s) 565, 762, 936
Bsp1720I GCTNAGC 1 cut(s) 951
BspACI CCGC 1 cut(s) 702
BspANI GGCC 5 cut(s) 82, 111, 176, 232, 737
BspCNI CTCAG 2 cut(s) 871, 1002
BspEI TCCGGA 1 cut(s) 996
BspFNI CGCG 1 cut(s) 182
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 4 cut(s) 8, 260, 366, 995
BspMI ACCTGC 1 cut(s) 955
BspT104I TTCGAA 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 352
BsrDI GCAATG 2 cut(s) 331, 430
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 5 cut(s) 112, 317, 452, 605, 758
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 3 cut(s) 565, 762, 936
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 718, 748
BstDEI CTNAG 5 cut(s) 528, 813, 879, 951, 1010
BstF5I GGATG 2 cut(s) 127, 520
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 2 cut(s) 676, 927
BstKTI GATC 3 cut(s) 568, 765, 939
BstMAI GTCTC 2 cut(s) 352, 567
BstMBI GATC 3 cut(s) 565, 762, 936
BstMWI GCNNNNNNNGC 4 cut(s) 554, 743, 922, 1000
BstNSI RCATGY 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 226
BstSLI GKGCMC 2 cut(s) 367, 698
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 934
BsuI GTATCC 1 cut(s) 837
BsuRI GGCC 5 cut(s) 82, 111, 176, 232, 737
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 127, 520
BtsIMutI CAGTG 5 cut(s) 205, 598, 765, 799, 993
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 2 cut(s) 718, 748
CaiI CAGNNNCTG 1 cut(s) 878
CciI TCATGA 1 cut(s) 355
CfoI GCGC 2 cut(s) 676, 927
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 46, 416, 587
CviAII CATG 8 cut(s) 118, 356, 569, 632, 691, 827, 884, 913
CviQI GTAC 3 cut(s) 46, 416, 587
DdeI CTNAG 5 cut(s) 528, 813, 879, 951, 1010
DpnI GATC 3 cut(s) 567, 764, 938
DpnII GATC 3 cut(s) 565, 762, 936
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 875
EcoT14I CCWWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 984
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 8 cut(s) 121, 359, 572, 635, 694, 830, 887, 916
FaqI GGGAC 2 cut(s) 449, 740
FatI CATG 8 cut(s) 117, 355, 568, 631, 690, 826, 883, 912
FauI CCCGC 1 cut(s) 695
FauNDI CATATG 1 cut(s) 972
FbaI TGATCA 3 cut(s) 565, 762, 936
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 923
FokI GGATG 2 cut(s) 134, 507
Fsp4HI GCNGC 1 cut(s) 923
FspBI CTAG 2 cut(s) 699, 723
GlaI GCGC 2 cut(s) 675, 926
GluI GCNGC 1 cut(s) 923
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 5 cut(s) 82, 111, 176, 232, 737
HapII CCGG 4 cut(s) 256, 558, 833, 997
HhaI GCGC 2 cut(s) 676, 927
Hin1II CATG 8 cut(s) 121, 359, 572, 635, 694, 830, 887, 916
Hin6I GCGC 2 cut(s) 674, 925
HinP1I GCGC 2 cut(s) 674, 925
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 288, 773
HpaII CCGG 4 cut(s) 256, 558, 833, 997
HphI GGTGA 2 cut(s) 575, 988
Hpy166II GTNNAC 2 cut(s) 208, 226
Hpy188I TCNGA 6 cut(s) 287, 439, 458, 772, 880, 1011
Hpy188III TCNNGA 3 cut(s) 262, 356, 997
Hpy8I GTNNAC 2 cut(s) 208, 226
HpyAV CCTTC 5 cut(s) 47, 101, 434, 576, 850
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 2 cut(s) 222, 576
HpyCH4V TGCA 9 cut(s) 423, 690, 716, 746, 868, 916, 922, 970, 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 554, 743, 922, 1000
HpyF3I CTNAG 5 cut(s) 528, 813, 879, 951, 1010
HpySE526I ACGT 2 cut(s) 222, 576
Hsp92II CATG 8 cut(s) 121, 359, 572, 635, 694, 830, 887, 916
HspAI GCGC 2 cut(s) 674, 925
Kpn2I TCCGGA 1 cut(s) 996
Ksp22I TGATCA 3 cut(s) 565, 762, 936
Kzo9I GATC 3 cut(s) 565, 762, 936
LmnI GCTCC 4 cut(s) 6, 264, 329, 999
Lsp1109I GCAGC 1 cut(s) 934
LweI GCATC 1 cut(s) 969
MaeI CTAG 2 cut(s) 699, 723
MaeII ACGT 2 cut(s) 222, 576
MalI GATC 3 cut(s) 567, 764, 938
MboI GATC 3 cut(s) 565, 762, 936
MboII GAAGA 4 cut(s) 61, 182, 310, 412
MhlI GDGCHC 2 cut(s) 367, 698
MluCI AATT 6 cut(s) 36, 125, 393, 408, 430, 861
MmeI TCCRAC 1 cut(s) 472
Mph1103I ATGCAT 1 cut(s) 984
MroI TCCGGA 1 cut(s) 996
MseI TTAA 2 cut(s) 407, 1005
MslI CAYNNNNRTG 3 cut(s) 17, 888, 917
MspI CCGG 4 cut(s) 256, 558, 833, 997
Mva1269I GAATGC 1 cut(s) 982
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 4 cut(s) 554, 743, 922, 1000
NdeI CATATG 1 cut(s) 972
NdeII GATC 3 cut(s) 565, 762, 936
NlaIII CATG 8 cut(s) 121, 359, 572, 635, 694, 830, 887, 916
NlaIV GGNNCC 4 cut(s) 8, 260, 366, 995
NsiI ATGCAT 1 cut(s) 984
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 1 cut(s) 34
PagI TCATGA 1 cut(s) 355
PceI AGGCCT 1 cut(s) 232
PctI GAATGC 1 cut(s) 982
PfeI GAWTC 2 cut(s) 288, 773
PflMI CCANNNNNTGG 2 cut(s) 118, 343
PkrI GCNGC 1 cut(s) 924
PspN4I GGNNCC 4 cut(s) 8, 260, 366, 995
PspPI GGNCC 1 cut(s) 80
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PstNI CAGNNNCTG 1 cut(s) 878
RsaI GTAC 3 cut(s) 47, 417, 588
RsaNI GTAC 3 cut(s) 46, 416, 587
RseI CAYNNNNRTG 3 cut(s) 17, 888, 917
SaqAI TTAA 2 cut(s) 407, 1005
SatI GCNGC 1 cut(s) 923
Sau3AI GATC 3 cut(s) 565, 762, 936
Sau96I GGNCC 1 cut(s) 80
ScaI AGTACT 1 cut(s) 417
SduI GDGCHC 2 cut(s) 367, 698
SfaNI GCATC 1 cut(s) 969
SfcI CTRYAG 1 cut(s) 226
SfuI TTCGAA 1 cut(s) 34
SmiMI CAYNNNNRTG 3 cut(s) 17, 888, 917
Sse9I AATT 6 cut(s) 36, 125, 393, 408, 430, 861
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 1 cut(s) 702
SspMI CTAG 2 cut(s) 699, 723
StuI AGGCCT 1 cut(s) 232
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 2 cut(s) 225, 579
TaqI TCGA 3 cut(s) 34, 273, 296
TasI AATT 6 cut(s) 36, 125, 393, 408, 430, 861
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 2 cut(s) 288, 773
Tru1I TTAA 2 cut(s) 407, 1005
Tru9I TTAA 2 cut(s) 407, 1005
TscAI CASTG 5 cut(s) 205, 605, 765, 799, 993
TseI GCWGC 1 cut(s) 922
TspDTI ATGAA 6 cut(s) 101, 106, 138, 723, 815, 900
TspRI CASTG 5 cut(s) 205, 605, 765, 799, 993
Van91I CCANNNNNTGG 2 cut(s) 118, 343
XapI RAATTY 3 cut(s) 36, 125, 393
XceI RCATGY 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 699, 723
ZrmI AGTACT 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.