AT5G11310

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
3606385 .. 3608628
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11310.1

Sequence Viewer

Length: 1809 bp
ATGAACTCTCTGTTCACCGCCTTCCGCCGCAACCTCCTCTTAAACCCTAATCCTCACCGCAACTTCTTTCTTCATAGATTGTTATCATCATCTCGCCGTTCATCCCCGCTCATTCCCGTCGAGCCTCTCATCCAACGGATACAATCACCCGCCGTACCCGATTCTACATGTACTCCACCGCAACAAAACACCGTCTCGAAAACCGATCTCTCTACTATATCGAATCTTCTCGAGAACACTGATGTTGTTCCCGGTTCGAGTCTCGAGTCAGCTTTAGATGAAACCGGAATCGAACCGAGTGTTGAGTTGGTTCACGCGTTGTTCGATCGGTTAAGTTCATCGCCGATGTTGCTTCACTCAGTGTTCAAATGGGCGGAGATGAAACCTGGGTTTACACTTTCTCCTTCACTTTTCGATTCTGTTGTCAATTCTCTATGTAAAGCTCGTGAATTTGAAATTGCTTGGTCGTTGGTTTTTGATCGAGTGAGAAGCGATGAAGGATCGAATTTGGTTTCTGCAGATACGTTCATCGTTTTGATCAGACGGTATGCTCGTGCTGGTATGGTGCAACAAGCTATACGAGCTTTTGAATTCGCTAGAAGTTATGAACCGGTTTGTAAATCAGCTACGGAACTTAGGTTGCTTGAGGTTTTGTTAGATGCACTTTGTAAAGAAGGTCATGTTAGAGAAGCTTCAATGTATTTGGAGAGAATAGGAGGGACGATGGATTCGAATTGGGTTCCTTCTGTTCGGATTTTCAACATTTTATTGAATGGATGGTTTCGTTCAAGAAAGCTAAAGCAGGCAGAGAAGTTATGGGAAGAGATGAAAGCGATGAATGTGAAGCCGACTGTTGTTACTTACGGTACTCTTATCGAAGGGTATTGCAGGATGCGTCGTGTTCAGATTGCTATGGAGGTTCTTGAAGAAATGAAGATGGCAGAAATGGAGATTAATTTTATGGTCTTTAATCCGATTATCGATGGTTTAGGAGAAGCGGGGCGGTTAAGTGAAGCTCTAGGTATGATGGAAAGGTTCTTCGTTTGTGAATCAGGTCCTACTATAGTGACTTATAATTCACTAGTGAAGAATTTCTGCAAGGCTGGAGATCTTCCTGGTGCTAGCAAAATACTCAAGATGATGATGACACGAGGTGTTGATCCTACCACGACTACATACAACCATTTCTTCAAGTATTTCTCAAAGCATAACAAAACGGAAGAGGGCATGAACTTATATTTCAAGTTGATTGAAGCTGGACACAGTCCAGACCGGTTAACGTATCATTTGATCTTGAAAATGCTGTGTGAGGATGGGAAGCTGAGCTTGGCGATGCAAGTGAACAAGGAGATGAAAAACAGAGGAATCGATCCTGACTTATTAACAACCACAATGCTTATACATTTGCTCTGCAGACTCGAGATGTTAGAAGAAGCCTTTGAAGAGTTTGACAACGCAGTGAGACGAGGGATTATTCCACAGTACATCACATTTAAGATGATCGATAACGGGTTGAGATCGAAAGGGATGAGCGATATGGCGAAGAGACTATCCAGCCTAATGTCGTCTCTTCCTCACTCGAAGAAGCTGCCAAATACATACAGAGAAGCAGTAGATGCACCGCCTGATAAAGATAGAAGGAAGTCTATTTTGCATAGAGCAGAAGCCATGTCTGATGTGTTGAAAGGTTGCAGGAACCCGAGAAAACTCGTGAAGATGCGTGGATCGCACAAAAAAGCTGTTGGTGAAGACATAAACCTGATAGATGATATCAATGAACGAAATGGAGATGCAGGGGATTTTGAGTGA

Protein Analysis

602

Amino Acids

68.34

Weight (kDa)

8.38

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 248 - 297 2.8e-15 PPR repeat family
PPR_3 PF13812 248 - 293 1.5e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 272 - 330 4.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 280 - 312 4.6e-12 PPR repeat
PPR_2 PF13041 283 - 330 1.9e-08 PPR repeat family
PPR PF01535 286 - 313 4.2e-06 PPR repeat
PPR_1 PF12854 353 - 381 2.3e-06 PPR repeat
PPR_2 PF13041 353 - 397 1.3e-09 PPR repeat family
PPR_3 PF13812 354 - 400 1.4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 388 - 436 4.3e-08 PPR repeat family
PPR_2 PF13041 431 - 472 9.3e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11310
fragaria_vesca FvH4_2g30070
malus_domestica MD08G1137400.v1.1
prunus_persica Prupe.1G467400_v2.0.a1
pyrus_communis pycom08g11630
rosa_chinensis RchiOBHm_Chr6g0312841
rosa_laevigata RLG00000010293
rosa_multiflora Rmu_sc0008049.1_g000008
rosa_roxburghii Rroxscaffold_7G00156440
rosa_rugosa Rorug06G0399900
rosa_samantha Rh6AG517200 Rh6BG528600 Rh6CG533300 Rh6DG519800
rosa_wichuraiana Rw6G044930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1074
AccBSI CCGCTC 1 cut(s) 109
AccII CGCG 1 cut(s) 317
AclWI GGATC 4 cut(s) 508, 1154, 1364, 1732
AcsI RAATTY 4 cut(s) 449, 505, 590, 1090
AdeI CACNNNGTG 2 cut(s) 361, 1154
AfaI GTAC 4 cut(s) 156, 172, 868, 1484
AflIII ACRYGT 2 cut(s) 167, 315
AgeI ACCGGT 2 cut(s) 610, 1272
AhlI ACTAGT 1 cut(s) 1081
AjnI CCWGG 2 cut(s) 385, 1114
AjuI GAANNNNNNNTTGG 2 cut(s) 1310, 1342
Alw26I GTCTC 5 cut(s) 199, 266, 1456, 1540, 1572
AlwI GGATC 4 cut(s) 508, 1154, 1364, 1732
Ama87I CYCGRG 4 cut(s) 230, 263, 1418, 1699
ApeKI GCWGC 1 cut(s) 1588
ApoI RAATTY 4 cut(s) 449, 505, 590, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 712, 744
AseI ATTAAT 1 cut(s) 954
AsiGI ACCGGT 2 cut(s) 610, 1272
Asp700I GAANNNNTTC 1 cut(s) 1091
AspS9I GGNCC 1 cut(s) 1055
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 4 cut(s) 7, 47, 138, 1757
AsuII TTCGAA 1 cut(s) 731
AsuNHI GCTAGC 1 cut(s) 1121
AvaI CYCGRG 4 cut(s) 230, 263, 1418, 1699
AvaII GGWCC 1 cut(s) 1055
BauI CACGAG 4 cut(s) 444, 552, 1149, 1709
BbsI GAAGAC 1 cut(s) 1755
BbvI GCAGC 1 cut(s) 1575
BccI CCATC 6 cut(s) 718, 771, 931, 977, 1021, 1307
BceAI ACGGC 2 cut(s) 81, 137
BcgI CGANNNNNNTGC 2 cut(s) 1570, 1604
BciT130I CCWGG 2 cut(s) 387, 1116
BciVI GTATCC 1 cut(s) 132
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 5 cut(s) 199, 266, 1456, 1540, 1572
BcuI ACTAGT 1 cut(s) 1081
BfaI CTAG 4 cut(s) 597, 1019, 1082, 1122
BfmI CTRYAG 3 cut(s) 516, 1062, 1411
BfuI GTATCC 1 cut(s) 132
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 2 cut(s) 28, 1589
BlpI GCTNAGC 1 cut(s) 1322
BlsI GCNGC 2 cut(s) 29, 1590
Bme1390I CCNGG 3 cut(s) 252, 387, 1116
Bme18I GGWCC 1 cut(s) 1055
BmeT110I CYCGRG 4 cut(s) 230, 263, 1418, 1699
BmgT120I GGNCC 1 cut(s) 1055
BmiI GGNNCC 2 cut(s) 741, 1697
BmrFI CCNGG 3 cut(s) 252, 387, 1116
BmsI GCATC 6 cut(s) 649, 882, 1323, 1606, 1707, 1780
BmtI GCTAGC 1 cut(s) 1125
BpiI GAAGAC 1 cut(s) 1755
BpmI CTGGAG 1 cut(s) 1125
Bpu1102I GCTNAGC 1 cut(s) 1322
Bpu14I TTCGAA 1 cut(s) 731
BpuEI CTTGAG 2 cut(s) 665, 1118
BpuMI CCSGG 1 cut(s) 252
Bsa29I ATCGAT 3 cut(s) 981, 1368, 1503
BsaBI GATNNNNATC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 386
BsaWI WCCGGW 3 cut(s) 284, 610, 1272
BsaXI ACNNNNNCTCC 4 cut(s) 157, 187, 385, 415
Bse118I RCCGGY 2 cut(s) 610, 1272
Bse8I GATNNNNATC 1 cut(s) 82
BseBI CCWGG 2 cut(s) 387, 1116
BseCI ATCGAT 3 cut(s) 981, 1368, 1503
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 6 cut(s) 101, 129, 782, 897, 1318, 1533
BseJI GATNNNNATC 1 cut(s) 82
BseMII CTCAG 2 cut(s) 372, 1313
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 1575
Bsh1236I CGCG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 328
BshTI ACCGGT 2 cut(s) 610, 1272
BshVI ATCGAT 3 cut(s) 981, 1368, 1503
BsiEI CGRYCG 1 cut(s) 328
BsiHKCI CYCGRG 4 cut(s) 230, 263, 1418, 1699
BsiSI CCGG 4 cut(s) 252, 285, 611, 1273
BslFI GGGAC 1 cut(s) 733
BsmAI GTCTC 5 cut(s) 199, 266, 1456, 1540, 1572
BsmBI CGTCTC 3 cut(s) 199, 1456, 1572
BsmFI GGGAC 1 cut(s) 733
BsoBI CYCGRG 4 cut(s) 230, 263, 1418, 1699
Bsp119I TTCGAA 1 cut(s) 731
Bsp1720I GCTNAGC 1 cut(s) 1322
BspCNI CTCAG 2 cut(s) 371, 1314
BspDI ATCGAT 3 cut(s) 981, 1368, 1503
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 741, 1697
BspMAI CTGCAG 2 cut(s) 520, 1415
BspOI GCTAGC 1 cut(s) 1125
BspPI GGATC 4 cut(s) 508, 1154, 1364, 1732
BspT104I TTCGAA 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 109
BsrFI RCCGGY 2 cut(s) 610, 1272
BssAI RCCGGY 2 cut(s) 610, 1272
BssECI CCNNGG 1 cut(s) 386
BssSI CACGAG 4 cut(s) 444, 552, 1149, 1709
Bst2BI CACGAG 4 cut(s) 444, 552, 1149, 1709
Bst2UI CCWGG 2 cut(s) 387, 1116
Bst4CI ACNGT 6 cut(s) 193, 546, 853, 866, 1265, 1482
Bst6I CTCTTC 5 cut(s) 816, 1215, 1437, 1538, 1575
BstAPI GCANNNNNTGC 1 cut(s) 1616
BstBI TTCGAA 1 cut(s) 731
BstC8I GCNNGC 2 cut(s) 804, 1123
BstDEI CTNAG 3 cut(s) 358, 635, 1322
BstF5I GGATG 6 cut(s) 101, 129, 782, 897, 1318, 1533
BstFNI CGCG 1 cut(s) 317
BstMAI GTCTC 5 cut(s) 199, 266, 1456, 1540, 1572
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 4 cut(s) 349, 581, 1616, 1726
BstNI CCWGG 2 cut(s) 387, 1116
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 3 cut(s) 250, 385, 1114
BstSFI CTRYAG 3 cut(s) 516, 1062, 1411
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 1575
BstV2I GAAGAC 1 cut(s) 1755
BstX2I RGATCY 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1108
Bsu15I ATCGAT 3 cut(s) 981, 1368, 1503
BsuI GTATCC 1 cut(s) 132
BsuTUI ATCGAT 3 cut(s) 981, 1368, 1503
BtgZI GCGATG 4 cut(s) 324, 507, 848, 1346
BtsCI GGATG 6 cut(s) 101, 129, 782, 897, 1318, 1533
BtsI GCAGTG 1 cut(s) 1464
BtsIMutI CAGTG 3 cut(s) 237, 366, 1464
Cac8I GCNNGC 2 cut(s) 804, 1123
Cfr10I RCCGGY 2 cut(s) 610, 1272
Cfr13I GGNCC 1 cut(s) 1055
ClaI ATCGAT 3 cut(s) 981, 1368, 1503
CseI GACGC 1 cut(s) 884
Csp6I GTAC 4 cut(s) 155, 171, 867, 1483
CspAI ACCGGT 2 cut(s) 610, 1272
CviAII CATG 4 cut(s) 168, 680, 1228, 1669
CviQI GTAC 4 cut(s) 155, 171, 867, 1483
DdeI CTNAG 3 cut(s) 358, 635, 1322
DraIII CACNNNGTG 2 cut(s) 361, 1154
Eam1104I CTCTTC 5 cut(s) 816, 1215, 1437, 1538, 1575
EarI CTCTTC 5 cut(s) 816, 1215, 1437, 1538, 1575
EciI GGCGGA 2 cut(s) 14, 389
Eco32I GATATC 1 cut(s) 1771
Eco47I GGWCC 1 cut(s) 1055
Eco88I CYCGRG 4 cut(s) 230, 263, 1418, 1699
EcoO109I RGGNCCY 1 cut(s) 1055
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 385, 1114
EcoRV GATATC 1 cut(s) 1771
Esp3I CGTCTC 3 cut(s) 199, 1456, 1572
FaeI CATG 4 cut(s) 171, 683, 1231, 1672
FalI AAGNNNNNCTT 2 cut(s) 1310, 1342
FaqI GGGAC 1 cut(s) 733
FatI CATG 4 cut(s) 167, 679, 1227, 1668
FauI CCCGC 3 cut(s) 114, 157, 991
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 2 cut(s) 28, 1589
FokI GGATG 6 cut(s) 88, 116, 789, 904, 1325, 1540
Fsp4HI GCNGC 2 cut(s) 28, 1589
FspBI CTAG 4 cut(s) 597, 1019, 1082, 1122
GluI GCNGC 2 cut(s) 28, 1589
GsuI CTGGAG 1 cut(s) 1125
HapII CCGG 4 cut(s) 252, 285, 611, 1273
HgaI GACGC 1 cut(s) 884
Hin1II CATG 4 cut(s) 171, 683, 1231, 1672
HincII GTYRAC 1 cut(s) 1278
HindII GTYRAC 1 cut(s) 1278
HindIII AAGCTT 1 cut(s) 690
HpaI GTTAAC 1 cut(s) 1278
HpaII CCGG 4 cut(s) 252, 285, 611, 1273
HphI GGTGA 4 cut(s) 7, 47, 138, 1757
Hpy166II GTNNAC 5 cut(s) 15, 313, 393, 1278, 1342
Hpy188I TCNGA 5 cut(s) 542, 753, 906, 975, 1675
Hpy8I GTNNAC 5 cut(s) 15, 313, 393, 1278, 1342
Hpy99I CGWCG 2 cut(s) 122, 900
HpyAV CCTTC 7 cut(s) 31, 414, 491, 668, 753, 872, 1632
HpyCH4III ACNGT 6 cut(s) 193, 546, 853, 866, 1265, 1482
HpyCH4IV ACGT 2 cut(s) 524, 1280
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 581, 1616, 1726
HpyF3I CTNAG 3 cut(s) 358, 635, 1322
HpySE526I ACGT 2 cut(s) 524, 1280
Hsp92II CATG 4 cut(s) 171, 683, 1231, 1672
Ksp22I TGATCA 1 cut(s) 537
KspAI GTTAAC 1 cut(s) 1278
Lsp1109I GCAGC 1 cut(s) 1575
LweI GCATC 6 cut(s) 649, 882, 1323, 1606, 1707, 1780
MaeI CTAG 4 cut(s) 597, 1019, 1082, 1122
MaeII ACGT 2 cut(s) 524, 1280
MaeIII GTNAC 2 cut(s) 856, 1066
MbiI CCGCTC 1 cut(s) 109
MflI RGATCY 1 cut(s) 1108
MluCI AATT 9 cut(s) 427, 449, 456, 505, 590, 733, 955, 1075, 1090
MluI ACGCGT 1 cut(s) 315
MlyI GAGTC 3 cut(s) 268, 275, 1410
MmeI TCCRAC 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 1091
MseI TTAA 8 cut(s) 41, 332, 954, 969, 1007, 1277, 1382, 1494
MspI CCGG 4 cut(s) 252, 285, 611, 1273
MspR9I CCNGG 3 cut(s) 252, 387, 1116
MvaI CCWGG 2 cut(s) 387, 1116
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 349, 581, 1616, 1726
NciI CCSGG 1 cut(s) 252
NheI GCTAGC 1 cut(s) 1121
NlaIII CATG 4 cut(s) 171, 683, 1231, 1672
NlaIV GGNNCC 2 cut(s) 741, 1697
NmuCI GTSAC 1 cut(s) 1066
NspI RCATGY 1 cut(s) 171
NspV TTCGAA 1 cut(s) 731
PaeR7I CTCGAG 3 cut(s) 230, 263, 1418
PciI ACATGT 1 cut(s) 167
PcsI WCGNNNNNNNCGW 3 cut(s) 321, 550, 728
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 7 cut(s) 161, 223, 288, 416, 728, 1049, 1365
PflFI GACNNNGTC 1 cut(s) 1263
PinAI ACCGGT 2 cut(s) 610, 1272
PkrI GCNGC 2 cut(s) 29, 1590
Ple19I CGATCG 1 cut(s) 328
PleI GAGTC 3 cut(s) 267, 274, 1410
PpsI GAGTC 3 cut(s) 267, 274, 1410
PpuMI RGGWCCY 1 cut(s) 1055
PscI ACATGT 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 954
PsiI TTATAA 1 cut(s) 1074
Psp5II RGGWCCY 1 cut(s) 1055
Psp6I CCWGG 2 cut(s) 385, 1114
PspGI CCWGG 2 cut(s) 385, 1114
PspN4I GGNNCC 2 cut(s) 741, 1697
PspPI GGNCC 1 cut(s) 1055
PspPPI RGGWCCY 1 cut(s) 1055
PstI CTGCAG 2 cut(s) 520, 1415
PsuI RGATCY 1 cut(s) 1108
PsyI GACNNNGTC 1 cut(s) 1263
PvuI CGATCG 1 cut(s) 328
RsaI GTAC 4 cut(s) 156, 172, 868, 1484
RsaNI GTAC 4 cut(s) 155, 171, 867, 1483
SaqAI TTAA 8 cut(s) 41, 332, 954, 969, 1007, 1277, 1382, 1494
SatI GCNGC 2 cut(s) 28, 1589
Sau96I GGNCC 1 cut(s) 1055
SchI GAGTC 3 cut(s) 268, 275, 1410
ScrFI CCNGG 3 cut(s) 252, 387, 1116
SfaNI GCATC 6 cut(s) 649, 882, 1323, 1606, 1707, 1780
SfcI CTRYAG 3 cut(s) 516, 1062, 1411
Sfr274I CTCGAG 3 cut(s) 230, 263, 1418
SfuI TTCGAA 1 cut(s) 731
SinI GGWCC 1 cut(s) 1055
SlaI CTCGAG 3 cut(s) 230, 263, 1418
SmlI CTYRAG 5 cut(s) 230, 263, 644, 1133, 1418
SmoI CTYRAG 5 cut(s) 230, 263, 644, 1133, 1418
SpeI ACTAGT 1 cut(s) 1081
Sse9I AATT 9 cut(s) 427, 449, 456, 505, 590, 733, 955, 1075, 1090
SspMI CTAG 4 cut(s) 597, 1019, 1082, 1122
StyD4I CCNGG 3 cut(s) 250, 385, 1114
TaaI ACNGT 6 cut(s) 193, 546, 853, 866, 1265, 1482
TaiI ACGT 2 cut(s) 527, 1283
TasI AATT 9 cut(s) 427, 449, 456, 505, 590, 733, 955, 1075, 1090
TatI WGTACW 2 cut(s) 170, 1482
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 7 cut(s) 161, 223, 288, 416, 728, 1049, 1365
Tru1I TTAA 8 cut(s) 41, 332, 954, 969, 1007, 1277, 1382, 1494
Tru9I TTAA 8 cut(s) 41, 332, 954, 969, 1007, 1277, 1382, 1494
TscAI CASTG 3 cut(s) 244, 366, 1464
TseFI GTSAC 1 cut(s) 1066
TseI GCWGC 1 cut(s) 1588
Tsp45I GTSAC 1 cut(s) 1066
TspGWI ACGGA 3 cut(s) 151, 644, 1232
TspRI CASTG 3 cut(s) 244, 366, 1464
Tth111I GACNNNGTC 1 cut(s) 1263
VpaK11BI GGWCC 1 cut(s) 1055
VspI ATTAAT 1 cut(s) 954
XapI RAATTY 4 cut(s) 449, 505, 590, 1090
XceI RCATGY 1 cut(s) 171
XhoI CTCGAG 3 cut(s) 230, 263, 1418
XmnI GAANNNNTTC 1 cut(s) 1091
XspI CTAG 4 cut(s) 597, 1019, 1082, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.