Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0016204

Physical Location & Seq

Genomic Coordinates Forward (+)

34499 .. 35653

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgagtttgtttgaaatcttactggattccctttgtaaggagggtcttgtgagggtggcctcggaatattttgatgggaaaagaaagttgcatcgacattggattccatcggttcgggtttataatatactgttgaatggatggtttcgagcgaggaagctgaagaaggcagagcggctttgggtggagatgaagagagacggcgtgaaacctagtgtcgtgacatatggtacacttgtagaaggatactgtcggatgcgtcgtcctgaaatctcaatggagttggtgggtgagatgaggagggaaggaattgaaccaaatgcgattgtgtttaatccaataattgatgctttgggggaagctgggaggttcaaggaagcgtgggggatgatggagtggttttcagttctggaatcaggccccactatttcgacgtacaattctctggtaaagggctattgcaaggccggaaatcttgtagaagctagtaggattattaagatgatgataagcaggggtattgtaccaactccaacaacctataactatttctttaggttcttttcaaagtctgggaaaattgaggaaggaatgaacctttataccaaaatgattgaatctgggtataccccagatcgtcttactttccatcttctgttgaagatgttatgtgaagagggaagattggatttggctgttcaagttagcaaggaaatgagaactaggggatgtgatatggatttagccacgagtaccatgttgattcatttgctctgcaaggtgaataaatttaaagaagctttgtcagagtttgaggacatgatacgcaggggtttagttccgcagtatctaacttttcagaacatgtatgatgaactaaggaaacaaggaatgactgaaatggcacgaaagctgtgcgccctgatgtcttctgttcctcattcaacaaagttgccgaatacatatggcaaagatagagatgaatctcatgcaaggagaaaatccataattcagaaggctgaagcaatgtctaatgtgttgaaaacttgttcagatccaagagaacttgttaagcacagaagttcgccggatactgttgaatcaagagcaaaccagttaatagagaatattaagacaaaagctaacattaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009787 GO:0009788 GO:0009791 GO:0009845 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010646 GO:0010648 GO:0016070 GO:0016787 GO:0016788 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1900140 GO:1901360 GO:1901363 GO:1901419 GO:1901420 GO:1905957 GO:1905958 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

384

Amino Acids

44.26

Weight (kDa)

9.42

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11310
fragaria_vesca	FvH4_2g30070
malus_domestica	MD08G1137400.v1.1
prunus_persica	Prupe.1G467400_v2.0.a1
pyrus_communis	pycom08g11630
rosa_chinensis	RchiOBHm_Chr6g0312841
rosa_laevigata	RLG00000010293
rosa_multiflora	Rmu_sc0008049.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156440
rosa_rugosa	Rorug06G0399900
rosa_samantha	Rh6AG517200 Rh6BG528600 Rh6CG533300 Rh6DG519800
rosa_wichuraiana	Rw6G044930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	2 cut(s)	175, 842
AclWI	GGATC	1 cut(s)	1049
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	2 cut(s)	182, 1041
AfaI	GTAC	4 cut(s)	232, 437, 525, 754
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	864
AluBI	AGCT	6 cut(s)	160, 362, 485, 800, 913, 1142
AluI	AGCT	6 cut(s)	160, 362, 485, 800, 913, 1142
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	1049
AoxI	GGCC	3 cut(s)	57, 418, 465
ApoI	RAATTY	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	302, 793
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
BauI	CACGAG	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	921
BccI	CCATC	5 cut(s)	68, 115, 135, 385, 657
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciVI	GTATCC	2 cut(s)	239, 1084
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	3 cut(s)	213, 486, 723
BfuI	GTATCC	2 cut(s)	239, 1084
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	421
BmsI	GCATC	3 cut(s)	100, 246, 337
BpiI	GAAGAC	1 cut(s)	921
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	27, 1114
Bse3DI	GCAATG	1 cut(s)	1032
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	4 cut(s)	146, 261, 393, 734
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	1032
BseNI	ACTGG	2 cut(s)	27, 1114
BseRI	GAGGAG	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	3 cut(s)	59, 420, 467
BsiSI	CCGG	2 cut(s)	468, 1088
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	59, 420, 467
Bsp143I	GATC	2 cut(s)	634, 1054
BspACI	CCGC	2 cut(s)	175, 842
BspANI	GGCC	3 cut(s)	59, 420, 467
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	1049
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	1032
BsrI	ACTGG	2 cut(s)	27, 1114
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	634, 1054
BssNAI	GTATAC	1 cut(s)	627
BssSI	CACGAG	1 cut(s)	748
Bst1107I	GTATAC	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	748
Bst4CI	ACNGT	3 cut(s)	132, 251, 1096
Bst6I	CTCTTC	2 cut(s)	188, 669
BstDEI	CTNAG	1 cut(s)	878
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	4 cut(s)	146, 261, 393, 734
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	2 cut(s)	637, 1057
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	634, 1054
BstNSI	RCATGY	1 cut(s)	868
BstV2I	GAAGAC	1 cut(s)	921
BstX2I	RGATCY	1 cut(s)	1054
BstYI	RGATCY	1 cut(s)	1054
BstZ17I	GTATAC	1 cut(s)	627
BsuI	GTATCC	2 cut(s)	239, 1084
BsuRI	GGCC	3 cut(s)	59, 420, 467
BtsCI	GGATG	4 cut(s)	146, 261, 393, 734
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	231, 436, 524, 753
CviAII	CATG	4 cut(s)	757, 820, 865, 989
CviQI	GTAC	4 cut(s)	231, 436, 524, 753
DdeI	CTNAG	1 cut(s)	878
DpnI	GATC	2 cut(s)	636, 1056
DpnII	GATC	2 cut(s)	634, 1054
DraI	TTTAAA	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	188, 669
EarI	CTCTTC	2 cut(s)	188, 669
Eco57I	CTGAAG	2 cut(s)	182, 1041
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	4 cut(s)	760, 823, 868, 992
FatI	CATG	4 cut(s)	756, 819, 864, 988
FauNDI	CATATG	2 cut(s)	226, 964
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	4 cut(s)	153, 268, 400, 741
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	3 cut(s)	213, 486, 723
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	59, 420, 467
HapII	CCGG	2 cut(s)	468, 1088
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	4 cut(s)	760, 823, 868, 992
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	798
HinfI	GANTC	7 cut(s)	26, 103, 413, 617, 763, 983, 1100
HpaII	CCGG	2 cut(s)	468, 1088
HphI	GGTGA	2 cut(s)	302, 793
Hpy166II	GTNNAC	2 cut(s)	233, 627
Hpy188I	TCNGA	6 cut(s)	64, 255, 808, 861, 1014, 1054
Hpy188III	TCNNGA	4 cut(s)	220, 266, 410, 1104
Hpy8I	GTNNAC	2 cut(s)	233, 627
Hpy99I	CGWCG	2 cut(s)	264, 436
HpyAV	CCTTC	5 cut(s)	160, 236, 299, 581, 1009
HpyCH4III	ACNGT	3 cut(s)	132, 251, 1096
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	4 cut(s)	91, 462, 777, 992
HpyF3I	CTNAG	1 cut(s)	878
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	760, 823, 868, 992
HspAI	GCGC	1 cut(s)	918
Kzo9I	GATC	2 cut(s)	634, 1054
LweI	GCATC	3 cut(s)	100, 246, 337
MaeI	CTAG	3 cut(s)	213, 486, 723
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	2 cut(s)	636, 1056
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	2 cut(s)	634, 1054
MboII	GAAGA	7 cut(s)	175, 205, 644, 673, 686, 693, 921
MflI	RGATCY	1 cut(s)	1054
MluCI	AATT	6 cut(s)	309, 342, 439, 579, 788, 1008
MmeI	TCCRAC	2 cut(s)	233, 557
MseI	TTAA	7 cut(s)	333, 498, 792, 1071, 1118, 1131, 1149
MspI	CCGG	2 cut(s)	468, 1088
NdeI	CATATG	2 cut(s)	226, 964
NdeII	GATC	2 cut(s)	634, 1054
NlaIII	CATG	4 cut(s)	760, 823, 868, 992
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	868
PciI	ACATGT	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	7 cut(s)	26, 103, 413, 617, 763, 983, 1100
PkrI	GCNGC	1 cut(s)	177
PscI	ACATGT	1 cut(s)	864
PsiI	TTATAA	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	1054
RsaI	GTAC	4 cut(s)	232, 437, 525, 754
RsaNI	GTAC	4 cut(s)	231, 436, 524, 753
SaqAI	TTAA	7 cut(s)	333, 498, 792, 1071, 1118, 1131, 1149
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	2 cut(s)	634, 1054
Sau96I	GGNCC	1 cut(s)	419
SfaNI	GCATC	3 cut(s)	100, 246, 337
Sse9I	AATT	6 cut(s)	309, 342, 439, 579, 788, 1008
SsiI	CCGC	2 cut(s)	175, 842
SspI	AATATT	2 cut(s)	68, 1129
SspMI	CTAG	3 cut(s)	213, 486, 723
TaaI	ACNGT	3 cut(s)	132, 251, 1096
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	3 cut(s)	94, 148, 431
TasI	AATT	6 cut(s)	309, 342, 439, 579, 788, 1008
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	7 cut(s)	26, 103, 413, 617, 763, 983, 1100
Tru1I	TTAA	7 cut(s)	333, 498, 792, 1071, 1118, 1131, 1149
Tru9I	TTAA	7 cut(s)	333, 498, 792, 1071, 1118, 1131, 1149
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	5 cut(s)	206, 608, 755, 888, 996
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	788
XceI	RCATGY	1 cut(s)	868
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	3 cut(s)	213, 486, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.