Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016204

Physical Location & Seq

Genomic Coordinates Forward (+)

71930617 .. 71935000

Gene Structure 4384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG528600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGCCCTCACAGAAACCCCGCCATTTTCTCTCTCTGGCCCTCCTCATCTTCTTCAAGCCAAACCCTAACCCTAACCCTAACTTTAACTTTCGTATTCTCTCTCTTCGATCCTTCTCCGACCAATCATGGCTGTCCGTACCCGGAAACCCCCTAATCAAGTGGCCCTCGCTCTCACCGCCTCCATCTCTCCCTTCCCCTTCCCCTAACCCTAATTTTGACCCCAAATTTTCACAAAATGACTTGTCCGCAATCGCTAACCTGCTCGCCGACCCACCCGGTCCATCGCTTCGGACCGCATTGGACCGGGCCGGAATTGACCCGAGTCCGAGTCTGCTACAGGCTGTGTTCGACCACTTTGATTCGTCTCCCAAATTGCTGCACACGCTGTTTGTTTGGGCTGAGAAGCAGCCCGGGTTTCGATGCTCTGCGACGCTCTTCACCTCCATGGTCAATGTGCTTGCCAAGGCTAGGGACTTTGAGTCTGCGTGGTCTATGATTCTTGATCGAATCGGCGGAGATAAGGAGCCTGGGTTGGTTTCTGTAGATGCATTTGTCATCATGATCAGACGGTATGCTCGTGCAGGTCAACCCCAATCAGCAATTCGAGCTTTTGAATTTGCAAGTACCTTAGAGTCATTTCTCAATTCTGAATCAGAAATGAGTTTGTTTGGAATCTTACTGGATTCCCTTTGTAAGGAGGGTCTTGTGAGGGTGGCCTCGGAATATTTTGATGGGAAAAGAAAGTTGCATCGAGATTGGATTCCATCGGTTCGGGTTTATAATATACTGTTGAATGGATGGTTTCGAGCGAGGAAGCTGAAGAAGGCAGAGCGGCTTTGGGTGGAGATGAAGAGAGACGGCGTGAAACCTAGTGTCGTGACATATGGTACACTTGTAGAAGGATACTGTCGGATGCGTCGTCCTGAAATCTCAATGGAGTTGGTGGGTGAGATGAGGAGGGAAGGAATTGAACCAAATGCGATTGTGTTTAATCCAATAATTGATGCTTTGGGGGAAGCCGGGAGGTTCAAGGAAGCGTGGGGGATGATGGAGCGGTTTTCAGTTCTGGAATCAGGCCCCACTATTTCGACGTACAATTCTCTGGTAAAGGGCTATTGCAAGGCCGGAAATCTTGTAGAAGCTAGTAGGATTATTAAGATGATGATAAGCAGGGGTATTGTACCAACTCCAACAACCTATAACTATTTCTTTAGGTTCTTTTCAAAGTCTGGGAAAATTGAGGAAGGAATGAACCTTTATACCAAAATGATTGAATCTGGGTATACCCCAGATCGTCTTACTTTCCATCTTCTGTTGAAGATGTTATGTGAAGAGGGAAGATTGGATTTGGCTGTTCAAGTTAGCAAGGAAATGAGAACTAGGGGATGTGATATGGATTTAGCCACGAGTACCATGTTGATTCATTTGCTCTGCAAGATGAATAAATTTAAAGAAGCTTTGTCAGAGTTTGAGGACATGATATGCAGGGGTTTAGTTCCGCAGTATCTAACTTTTCAGAGCATGTATGATGAACTAAGGAAACAAGGAATGACTGAAATGGCACGAAAGCTGTGCGCCCTGATGTCTTCTGTTCCTCATTCAACAAAGTTGCCGAATACATATGTCAAAGATAGAGATGAATCTCATGCAAGGAGAAAATCTATAATTCAGAAGGCTGAAGCAATGTCTAATGTGTTGAAAACTTGTTCAGATCCAAGAGAACTTGTTAAGCACAGAAGTTTGCCGGAGACTGTTGAATCAAGAGCAAACCAGTTAATAGAGAATATTAAGACAAAAGCTAACATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009787 GO:0009788 GO:0009791 GO:0009845 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010646 GO:0010648 GO:0016070 GO:0016787 GO:0016788 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1900140 GO:1901360 GO:1901363 GO:1901419 GO:1901420 GO:1905957 GO:1905958 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

603

Amino Acids

68.38

Weight (kDa)

9.32

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	255 - 304	3.5e-15	PPR repeat family
PPR_3	PF13812	255 - 299	2.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	279 - 339	6.5e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	286 - 319	4.7e-08	PPR repeat
PPR_2	PF13041	290 - 337	1.6e-09	PPR repeat family
PPR	PF01535	293 - 323	1e-05	PPR repeat
PPR_2	PF13041	360 - 407	1.8e-10	PPR repeat family
PPR_1	PF12854	360 - 388	4.5e-08	PPR repeat
PPR_3	PF13812	362 - 406	5.4e-06	Pentatricopeptide repeat domain
PPR	PF01535	363 - 393	2.9e-08	PPR repeat
PPR_2	PF13041	399 - 443	7.1e-08	PPR repeat family
PPR_2	PF13041	438 - 479	1.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11310
fragaria_vesca	FvH4_2g30070
malus_domestica	MD08G1137400.v1.1
prunus_persica	Prupe.1G467400_v2.0.a1
pyrus_communis	pycom08g11630
rosa_chinensis	RchiOBHm_Chr6g0312841
rosa_laevigata	RLG00000010293
rosa_multiflora	Rmu_sc0008049.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156440
rosa_rugosa	Rorug06G0399900
rosa_samantha	Rh6AG517200 Rh6BG528600 Rh6CG533300 Rh6DG519800
rosa_wichuraiana	Rw6G044930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
Acc36I	ACCTGC	2 cut(s)	267, 572
AccBSI	CCGCTC	2 cut(s)	832, 1054
AccI	GTMKAC	1 cut(s)	1283
AciI	CCGC	8 cut(s)	19, 176, 246, 294, 513, 832, 1054, 1499
AclWI	GGATC	2 cut(s)	102, 1706
AcsI	RAATTY	3 cut(s)	224, 614, 1445
AcuI	CTGAAG	2 cut(s)	839, 1698
AfaI	GTAC	6 cut(s)	138, 625, 889, 1094, 1182, 1411
AfiI	CCNNNNNNNGG	2 cut(s)	468, 694
AhdI	GACNNNNNGTC	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	6 cut(s)	608, 817, 1142, 1457, 1570, 1799
AluI	AGCT	6 cut(s)	608, 817, 1142, 1457, 1570, 1799
Alw26I	GTCTC	3 cut(s)	369, 849, 1742
AlwI	GGATC	2 cut(s)	102, 1706
Ama87I	CYCGRG	2 cut(s)	319, 410
AoxI	GGCC	6 cut(s)	36, 161, 306, 714, 1075, 1122
ApeKI	GCWGC	2 cut(s)	376, 406
ApoI	RAATTY	3 cut(s)	224, 614, 1445
AspLEI	GCGC	1 cut(s)	1577
AspS9I	GGNCC	7 cut(s)	37, 162, 278, 291, 301, 306, 1076
AsuC2I	CCSGG	6 cut(s)	141, 276, 305, 411, 412, 1021
AsuHPI	GGTGA	3 cut(s)	165, 430, 959
AvaI	CYCGRG	2 cut(s)	319, 410
AvaII	GGWCC	3 cut(s)	278, 291, 301
BaeI	ACNNNNGTAYC	2 cut(s)	879, 912
BauI	CACGAG	2 cut(s)	576, 1405
BbsI	GAAGAC	1 cut(s)	1578
BbvI	GCAGC	2 cut(s)	363, 418
BccI	CCATC	7 cut(s)	190, 289, 725, 772, 792, 1042, 1314
BceAI	ACGGC	1 cut(s)	874
BcgI	CGANNNNNNTGC	2 cut(s)	1554, 1588
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	896
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	6 cut(s)	141, 276, 305, 411, 412, 1021
BcoDI	GTCTC	3 cut(s)	369, 849, 1742
BfaI	CTAG	4 cut(s)	468, 870, 1143, 1380
BfmI	CTRYAG	2 cut(s)	335, 540
BfuAI	ACCTGC	2 cut(s)	267, 572
BfuI	GTATCC	1 cut(s)	896
BisI	GCNGC	3 cut(s)	377, 407, 833
BlsI	GCNGC	3 cut(s)	378, 408, 834
Bme1390I	CCNGG	7 cut(s)	141, 276, 305, 411, 412, 528, 1021
Bme18I	GGWCC	3 cut(s)	278, 291, 301
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmeT110I	CYCGRG	2 cut(s)	319, 410
BmgT120I	GGNCC	7 cut(s)	37, 162, 278, 291, 301, 306, 1076
BmiI	GGNNCC	2 cut(s)	525, 1078
BmrFI	CCNGG	7 cut(s)	141, 276, 305, 411, 412, 528, 1021
BmsI	GCATC	5 cut(s)	410, 535, 757, 903, 994
BoxI	GACNNNNGTC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	1578
BpuMI	CCSGG	6 cut(s)	141, 276, 305, 411, 412, 1021
BsaJI	CCNNGG	5 cut(s)	410, 444, 462, 527, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 694
Bse1I	ACTGG	2 cut(s)	684, 1771
Bse3DI	GCAATG	1 cut(s)	1689
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	5 cut(s)	410, 444, 462, 527, 717
BseGI	GGATG	4 cut(s)	803, 918, 1050, 1391
BseLI	CCNNNNNNNGG	2 cut(s)	468, 694
BseMI	GCAATG	1 cut(s)	1689
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	684, 1771
BseRI	GAGGAG	2 cut(s)	32, 970
BseXI	GCAGC	2 cut(s)	363, 418
BsgI	GTGCAG	2 cut(s)	362, 600
BshFI	GGCC	6 cut(s)	38, 163, 308, 716, 1077, 1124
BsiHKCI	CYCGRG	2 cut(s)	319, 410
BsiSI	CCGG	8 cut(s)	141, 276, 304, 309, 411, 1020, 1125, 1745
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	468, 694
BsmAI	GTCTC	3 cut(s)	369, 849, 1742
BsmBI	CGTCTC	2 cut(s)	369, 849
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	6 cut(s)	38, 163, 308, 716, 1077, 1124
BsoBI	CYCGRG	2 cut(s)	319, 410
Bsp143I	GATC	5 cut(s)	107, 502, 561, 1291, 1711
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	8 cut(s)	19, 176, 246, 294, 513, 832, 1054, 1499
BspANI	GGCC	6 cut(s)	38, 163, 308, 716, 1077, 1124
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	525, 1078
BspMI	ACCTGC	2 cut(s)	267, 572
BspPI	GGATC	2 cut(s)	102, 1706
BspQI	GCTCTTC	1 cut(s)	440
BsrBI	CCGCTC	2 cut(s)	832, 1054
BsrDI	GCAATG	1 cut(s)	1689
BsrI	ACTGG	2 cut(s)	684, 1771
BssECI	CCNNGG	5 cut(s)	410, 444, 462, 527, 717
BssMI	GATC	5 cut(s)	107, 502, 561, 1291, 1711
BssNAI	GTATAC	1 cut(s)	1284
BssSI	CACGAG	2 cut(s)	576, 1405
BssT1I	CCWWGG	2 cut(s)	444, 462
Bst1107I	GTATAC	1 cut(s)	1284
Bst2BI	CACGAG	2 cut(s)	576, 1405
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	4 cut(s)	570, 789, 908, 1753
Bst6I	CTCTTC	4 cut(s)	108, 440, 845, 1326
BstC8I	GCNNGC	2 cut(s)	264, 459
BstDEI	CTNAG	3 cut(s)	399, 628, 1535
BstDSI	CCRYGG	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	4 cut(s)	803, 918, 1050, 1391
BstHHI	GCGC	1 cut(s)	1577
BstKTI	GATC	5 cut(s)	110, 505, 564, 1294, 1714
BstMAI	GTCTC	3 cut(s)	369, 849, 1742
BstMBI	GATC	5 cut(s)	107, 502, 561, 1291, 1711
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 382, 605
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	1525
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	7 cut(s)	139, 274, 303, 409, 410, 526, 1019
BstSFI	CTRYAG	2 cut(s)	335, 540
BstV1I	GCAGC	2 cut(s)	363, 418
BstV2I	GAAGAC	1 cut(s)	1578
BstX2I	RGATCY	1 cut(s)	1711
BstYI	RGATCY	1 cut(s)	1711
BstZ17I	GTATAC	1 cut(s)	1284
BsuI	GTATCC	1 cut(s)	896
BsuRI	GGCC	6 cut(s)	38, 163, 308, 716, 1077, 1124
BtgI	CCRYGG	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	803, 918, 1050, 1391
BveI	ACCTGC	2 cut(s)	267, 572
Cac8I	GCNNGC	2 cut(s)	264, 459
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	1577
Cfr13I	GGNCC	7 cut(s)	37, 162, 278, 291, 301, 306, 1076
Cfr9I	CCCGGG	1 cut(s)	410
CpoI	CGGWCCG	1 cut(s)	291
CseI	GACGC	2 cut(s)	439, 905
Csp6I	GTAC	6 cut(s)	137, 624, 888, 1093, 1181, 1410
CspI	CGGWCCG	1 cut(s)	291
CviAII	CATG	7 cut(s)	126, 445, 559, 1414, 1477, 1522, 1646
CviQI	GTAC	6 cut(s)	137, 624, 888, 1093, 1181, 1410
DdeI	CTNAG	3 cut(s)	399, 628, 1535
DpnI	GATC	5 cut(s)	109, 504, 563, 1293, 1713
DpnII	GATC	5 cut(s)	107, 502, 561, 1291, 1711
DraI	TTTAAA	1 cut(s)	1450
DriI	GACNNNNNGTC	1 cut(s)	478
Eam1104I	CTCTTC	4 cut(s)	108, 440, 845, 1326
Eam1105I	GACNNNNNGTC	1 cut(s)	478
EarI	CTCTTC	4 cut(s)	108, 440, 845, 1326
EciI	GGCGGA	1 cut(s)	528
Eco130I	CCWWGG	2 cut(s)	444, 462
Eco47I	GGWCC	3 cut(s)	278, 291, 301
Eco57I	CTGAAG	2 cut(s)	839, 1698
Eco88I	CYCGRG	2 cut(s)	319, 410
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	1076
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	444, 462
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	444, 462
Esp3I	CGTCTC	2 cut(s)	369, 849
FaeI	CATG	7 cut(s)	129, 448, 562, 1417, 1480, 1525, 1649
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	7 cut(s)	125, 444, 558, 1413, 1476, 1521, 1645
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	2 cut(s)	883, 1621
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	1283
Fnu4HI	GCNGC	3 cut(s)	377, 407, 833
FokI	GGATG	4 cut(s)	810, 925, 1057, 1398
Fsp4HI	GCNGC	3 cut(s)	377, 407, 833
FspBI	CTAG	4 cut(s)	468, 870, 1143, 1380
GlaI	GCGC	1 cut(s)	1576
GluI	GCNGC	3 cut(s)	377, 407, 833
HaeIII	GGCC	6 cut(s)	38, 163, 308, 716, 1077, 1124
HapII	CCGG	8 cut(s)	141, 276, 304, 309, 411, 1020, 1125, 1745
HgaI	GACGC	2 cut(s)	439, 905
HhaI	GCGC	1 cut(s)	1577
Hin1II	CATG	7 cut(s)	129, 448, 562, 1417, 1480, 1525, 1649
Hin6I	GCGC	1 cut(s)	1575
HinP1I	GCGC	1 cut(s)	1575
HincII	GTYRAC	1 cut(s)	587
HindII	GTYRAC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	1455
HpaII	CCGG	8 cut(s)	141, 276, 304, 309, 411, 1020, 1125, 1745
HphI	GGTGA	3 cut(s)	165, 430, 959
Hpy166II	GTNNAC	3 cut(s)	587, 890, 1284
Hpy188III	TCNNGA	7 cut(s)	500, 559, 752, 877, 923, 1067, 1761
Hpy8I	GTNNAC	3 cut(s)	587, 890, 1284
Hpy99I	CGWCG	3 cut(s)	433, 921, 1093
HpyAV	CCTTC	8 cut(s)	121, 201, 207, 817, 893, 956, 1238, 1666
HpyCH4III	ACNGT	4 cut(s)	570, 789, 908, 1753
HpyCH4IV	ACGT	1 cut(s)	1091
HpyCH4V	TGCA	9 cut(s)	379, 548, 581, 620, 748, 1119, 1434, 1485, 1649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 382, 605
HpyF3I	CTNAG	3 cut(s)	399, 628, 1535
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	7 cut(s)	129, 448, 562, 1417, 1480, 1525, 1649
HspAI	GCGC	1 cut(s)	1575
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	107, 502, 561, 1291, 1711
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	2 cut(s)	523, 1051
Lsp1109I	GCAGC	2 cut(s)	363, 418
LweI	GCATC	5 cut(s)	410, 535, 757, 903, 994
MaeI	CTAG	4 cut(s)	468, 870, 1143, 1380
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	1 cut(s)	877
MalI	GATC	5 cut(s)	109, 504, 563, 1293, 1713
MbiI	CCGCTC	2 cut(s)	832, 1054
MboI	GATC	5 cut(s)	107, 502, 561, 1291, 1711
MflI	RGATCY	1 cut(s)	1711
MlyI	GAGTC	4 cut(s)	331, 337, 488, 641
MmeI	TCCRAC	3 cut(s)	141, 890, 1214
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	8 cut(s)	84, 990, 1155, 1449, 1728, 1775, 1788, 1806
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	8 cut(s)	141, 276, 304, 309, 411, 1020, 1125, 1745
MspR9I	CCNGG	7 cut(s)	141, 276, 305, 411, 412, 528, 1021
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	175, 382, 605
NciI	CCSGG	6 cut(s)	141, 276, 305, 411, 412, 1021
NcoI	CCATGG	1 cut(s)	444
NdeI	CATATG	2 cut(s)	883, 1621
NdeII	GATC	5 cut(s)	107, 502, 561, 1291, 1711
NlaIII	CATG	7 cut(s)	129, 448, 562, 1417, 1480, 1525, 1649
NlaIV	GGNNCC	2 cut(s)	525, 1078
NmuCI	GTSAC	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	1525
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	2 cut(s)	574, 916
PkrI	GCNGC	3 cut(s)	378, 408, 834
PleI	GAGTC	4 cut(s)	330, 336, 487, 640
PpsI	GAGTC	4 cut(s)	330, 336, 487, 640
PshAI	GACNNNNGTC	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	525, 1078
PspPI	GGNCC	7 cut(s)	37, 162, 278, 291, 301, 306, 1076
PsuI	RGATCY	1 cut(s)	1711
RsaI	GTAC	6 cut(s)	138, 625, 889, 1094, 1182, 1411
RsaNI	GTAC	6 cut(s)	137, 624, 888, 1093, 1181, 1410
RseI	CAYNNNNRTG	1 cut(s)	443
Rsr2I	CGGWCCG	1 cut(s)	291
RsrII	CGGWCCG	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	8 cut(s)	84, 990, 1155, 1449, 1728, 1775, 1788, 1806
SatI	GCNGC	3 cut(s)	377, 407, 833
Sau3AI	GATC	5 cut(s)	107, 502, 561, 1291, 1711
Sau96I	GGNCC	7 cut(s)	37, 162, 278, 291, 301, 306, 1076
SchI	GAGTC	4 cut(s)	331, 337, 488, 641
ScrFI	CCNGG	7 cut(s)	141, 276, 305, 411, 412, 528, 1021
SfaNI	GCATC	5 cut(s)	410, 535, 757, 903, 994
SfcI	CTRYAG	2 cut(s)	335, 540
SinI	GGWCC	3 cut(s)	278, 291, 301
SmaI	CCCGGG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	443
SsiI	CCGC	8 cut(s)	19, 176, 246, 294, 513, 832, 1054, 1499
SspI	AATATT	2 cut(s)	725, 1786
SspMI	CTAG	4 cut(s)	468, 870, 1143, 1380
StyD4I	CCNGG	7 cut(s)	139, 274, 303, 409, 410, 526, 1019
StyI	CCWWGG	2 cut(s)	444, 462
TaaI	ACNGT	4 cut(s)	570, 789, 908, 1753
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	8 cut(s)	106, 348, 418, 505, 604, 751, 805, 1088
TauI	GCSGC	1 cut(s)	835
Tru1I	TTAA	8 cut(s)	84, 990, 1155, 1449, 1728, 1775, 1788, 1806
Tru9I	TTAA	8 cut(s)	84, 990, 1155, 1449, 1728, 1775, 1788, 1806
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	2 cut(s)	376, 406
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	6 cut(s)	863, 1265, 1412, 1454, 1545, 1653
TspGWI	ACGGA	1 cut(s)	124
TspMI	CCCGGG	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	278, 291, 301
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	3 cut(s)	224, 614, 1445
XceI	RCATGY	1 cut(s)	1525
XmaI	CCCGGG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	1283
XspI	CTAG	4 cut(s)	468, 870, 1143, 1380
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.