The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 908, 3126, 3282 |
| AatII | GACGTC | 1 cut(s) | 3070 |
| Acc36I | ACCTGC | 2 cut(s) | 763, 1425 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2483, 2810 |
| AccI | GTMKAC | 1 cut(s) | 126 |
| AccII | CGCG | 2 cut(s) | 2848, 3583 |
| AclWI | GGATC | 6 cut(s) | 686, 699, 858, 1711, 3485, 3920 |
| AcsI | RAATTY | 8 cut(s) | 1634, 2239, 2854, 3046, 3298, 3418, 3457, 4022 |
| AcuI | CTGAAG | 9 cut(s) | 533, 1938, 2481, 2607, 2912, 3018, 3864, 3870, 4064 |
| AcyI | GRCGYC | 1 cut(s) | 3067 |
| AfaI | GTAC | 9 cut(s) | 443, 759, 1653, 1843, 1863, 2703, 2787, 3630, 3762 |
| AflIII | ACRYGT | 1 cut(s) | 2991 |
| AhlI | ACTAGT | 1 cut(s) | 787 |
| AjnI | CCWGG | 5 cut(s) | 1048, 1879, 2347, 2482, 3396 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2746, 2778 |
| AleI | CACNNNNGTG | 3 cut(s) | 1274, 1382, 1514 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3306, 3338 |
| Alw21I | GWGCWC | 7 cut(s) | 366, 456, 1161, 1738, 2156, 3189, 3997 |
| Alw26I | GTCTC | 3 cut(s) | 296, 2231, 3961 |
| Alw44I | GTGCAC | 1 cut(s) | 1734 |
| AlwI | GGATC | 6 cut(s) | 686, 699, 858, 1711, 3485, 3920 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1195, 1850, 2597 |
| Ama87I | CYCGRG | 1 cut(s) | 489 |
| AoxI | GGCC | 8 cut(s) | 43, 402, 584, 900, 1069, 1619, 2594, 2957 |
| ApaLI | GTGCAC | 1 cut(s) | 1734 |
| ApoI | RAATTY | 8 cut(s) | 1634, 2239, 2854, 3046, 3298, 3418, 3457, 4022 |
| AseI | ATTAAT | 2 cut(s) | 632, 3332 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4081 |
| AspLEI | GCGC | 2 cut(s) | 7, 4104 |
| AspS9I | GGNCC | 8 cut(s) | 912, 1022, 2558, 2594, 2801, 3080, 3791, 3858 |
| AsuC2I | CCSGG | 2 cut(s) | 2799, 3589 |
| AsuHPI | GGTGA | 6 cut(s) | 344, 504, 833, 1698, 1920, 3181 |
| AsuII | TTCGAA | 1 cut(s) | 883 |
| AvaI | CYCGRG | 1 cut(s) | 489 |
| AvaII | GGWCC | 7 cut(s) | 912, 1022, 2558, 2801, 3080, 3791, 3858 |
| BaeGI | GKGCMC | 2 cut(s) | 604, 1738 |
| BamHI | GGATCC | 1 cut(s) | 691 |
| BanII | GRGCYC | 3 cut(s) | 2156, 3589, 3997 |
| Bbv12I | GWGCWC | 7 cut(s) | 366, 456, 1161, 1738, 2156, 3189, 3997 |
| BbvCI | CCTCAGC | 1 cut(s) | 539 |
| BceAI | ACGGC | 4 cut(s) | 648, 915, 1634, 2521 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 470, 504 |
| BciT130I | CCWGG | 5 cut(s) | 1050, 1881, 2349, 2484, 3398 |
| BclI | TGATCA | 2 cut(s) | 1771, 3217 |
| BcnI | CCSGG | 2 cut(s) | 2799, 3589 |
| BcoDI | GTCTC | 3 cut(s) | 296, 2231, 3961 |
| BcuI | ACTAGT | 1 cut(s) | 787 |
| BfaI | CTAG | 6 cut(s) | 593, 788, 833, 1839, 2772, 3326 |
| BfmI | CTRYAG | 6 cut(s) | 500, 1314, 1557, 1968, 2451, 3018 |
| BfoI | RGCGCY | 2 cut(s) | 8, 4105 |
| BfuAI | ACCTGC | 2 cut(s) | 763, 1425 |
| BglII | AGATCT | 1 cut(s) | 1104 |
| Bme1390I | CCNGG | 7 cut(s) | 1050, 1881, 2349, 2484, 2799, 3398, 3589 |
| Bme18I | GGWCC | 7 cut(s) | 912, 1022, 2558, 2801, 3080, 3791, 3858 |
| BmeT110I | CYCGRG | 1 cut(s) | 489 |
| BmgT120I | GGNCC | 8 cut(s) | 912, 1022, 2558, 2594, 2801, 3080, 3791, 3858 |
| BmiI | GGNNCC | 5 cut(s) | 693, 1485, 2535, 2560, 2979 |
| BmrFI | CCNGG | 7 cut(s) | 1050, 1881, 2349, 2484, 2799, 3398, 3589 |
| BmrI | ACTGGG | 1 cut(s) | 456 |
| BmuI | ACTGGG | 1 cut(s) | 456 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1912 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1495, 1527 |
| BpmI | CTGGAG | 6 cut(s) | 1145, 1407, 2313, 2631, 2832, 2964 |
| Bpu10I | CCTNAGC | 4 cut(s) | 539, 1281, 1389, 3113 |
| Bpu14I | TTCGAA | 1 cut(s) | 883 |
| BpuEI | CTTGAG | 3 cut(s) | 340, 3023, 3257 |
| BpuMI | CCSGG | 2 cut(s) | 2799, 3589 |
| BsaBI | GATNNNNATC | 2 cut(s) | 855, 3216 |
| BsaHI | GRCGYC | 1 cut(s) | 3067 |
| BsaWI | WCCGGW | 2 cut(s) | 432, 1019 |
| Bse1I | ACTGG | 7 cut(s) | 451, 1076, 1200, 1676, 1709, 2546, 3794 |
| Bse3DI | GCAATG | 4 cut(s) | 587, 1931, 1943, 2433 |
| Bse8I | GATNNNNATC | 2 cut(s) | 855, 3216 |
| BseBI | CCWGG | 5 cut(s) | 1050, 1881, 2349, 2484, 3398 |
| BseJI | GATNNNNATC | 2 cut(s) | 855, 3216 |
| BseMI | GCAATG | 4 cut(s) | 587, 1931, 1943, 2433 |
| BseNI | ACTGG | 7 cut(s) | 451, 1076, 1200, 1676, 1709, 2546, 3794 |
| BseRI | GAGGAG | 8 cut(s) | 1073, 2094, 2244, 2325, 2571, 2634, 2700, 2703 |
| BseSI | GKGCMC | 2 cut(s) | 604, 1738 |
| BsgI | GTGCAG | 3 cut(s) | 402, 1656, 1895 |
| Bsh1236I | CGCG | 2 cut(s) | 2848, 3583 |
| BshFI | GGCC | 8 cut(s) | 45, 404, 586, 902, 1071, 1621, 2596, 2959 |
| BsiHKAI | GWGCWC | 7 cut(s) | 366, 456, 1161, 1738, 2156, 3189, 3997 |
| BsiHKCI | CYCGRG | 1 cut(s) | 489 |
| BsiSI | CCGG | 4 cut(s) | 433, 1020, 2799, 3589 |
| BslFI | GGGAC | 5 cut(s) | 1251, 1491, 2493, 2544, 2847 |
| BsmAI | GTCTC | 3 cut(s) | 296, 2231, 3961 |
| BsmFI | GGGAC | 5 cut(s) | 1251, 1491, 2493, 2544, 2847 |
| BsmI | GAATGC | 2 cut(s) | 1966, 3374 |
| BsnI | GGCC | 8 cut(s) | 45, 404, 586, 902, 1071, 1621, 2596, 2959 |
| BsoBI | CYCGRG | 1 cut(s) | 489 |
| Bsp119I | TTCGAA | 1 cut(s) | 883 |
| Bsp1286I | GDGCHC | 9 cut(s) | 366, 456, 604, 1161, 1738, 2156, 3189, 3589, 3997 |
| Bsp1407I | TGTACA | 1 cut(s) | 3760 |
| BspANI | GGCC | 8 cut(s) | 45, 404, 586, 902, 1071, 1621, 2596, 2959 |
| BspFNI | CGCG | 2 cut(s) | 2848, 3583 |
| BspHI | TCATGA | 2 cut(s) | 853, 3997 |
| BspLI | GGNNCC | 5 cut(s) | 693, 1485, 2535, 2560, 2979 |
| BspMAI | CTGCAG | 3 cut(s) | 504, 2455, 3022 |
| BspMI | ACCTGC | 2 cut(s) | 763, 1425 |
| BspPI | GGATC | 6 cut(s) | 686, 699, 858, 1711, 3485, 3920 |
| BspQI | GCTCTTC | 1 cut(s) | 14 |
| BspT104I | TTCGAA | 1 cut(s) | 883 |
| BsrDI | GCAATG | 4 cut(s) | 587, 1931, 1943, 2433 |
| BsrGI | TGTACA | 1 cut(s) | 3760 |
| BsrI | ACTGG | 7 cut(s) | 451, 1076, 1200, 1676, 1709, 2546, 3794 |
| BssNI | GRCGYC | 1 cut(s) | 3067 |
| BssT1I | CCWWGG | 5 cut(s) | 978, 1747, 2973, 3192, 3861 |
| Bst2UI | CCWGG | 5 cut(s) | 1050, 1881, 2349, 2484, 3398 |
| Bst6I | CTCTTC | 5 cut(s) | 14, 864, 2101, 2721, 3252 |
| BstACI | GRCGYC | 1 cut(s) | 3067 |
| BstAUI | TGTACA | 1 cut(s) | 3760 |
| BstBI | TTCGAA | 1 cut(s) | 883 |
| BstC8I | GCNNGC | 9 cut(s) | 338, 414, 483, 1623, 2010, 2598, 3120, 3585, 3732 |
| BstDSI | CCRYGG | 3 cut(s) | 1275, 1383, 3344 |
| BstEII | GGTNACC | 2 cut(s) | 350, 2017 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 907, 2412, 3623, 4046 |
| BstFNI | CGCG | 2 cut(s) | 2848, 3583 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 4105 |
| BstHHI | GCGC | 2 cut(s) | 7, 4104 |
| BstMAI | GTCTC | 3 cut(s) | 296, 2231, 3961 |
| BstNI | CCWGG | 5 cut(s) | 1050, 1881, 2349, 2484, 3398 |
| BstNSI | RCATGY | 1 cut(s) | 2995 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1912 |
| BstPI | GGTNACC | 2 cut(s) | 350, 2017 |
| BstSCI | CCNGG | 7 cut(s) | 1048, 1879, 2347, 2482, 2797, 3396, 3587 |
| BstSFI | CTRYAG | 6 cut(s) | 500, 1314, 1557, 1968, 2451, 3018 |
| BstSLI | GKGCMC | 2 cut(s) | 604, 1738 |
| BstUI | CGCG | 2 cut(s) | 2848, 3583 |
| BstX2I | RGATCY | 3 cut(s) | 691, 1104, 3925 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1276, 1384, 1516, 2904 |
| BstYI | RGATCY | 3 cut(s) | 691, 1104, 3925 |
| BsuRI | GGCC | 8 cut(s) | 45, 404, 586, 902, 1071, 1621, 2596, 2959 |
| BtgI | CCRYGG | 3 cut(s) | 1275, 1383, 3344 |
| BtgZI | GCGATG | 1 cut(s) | 2939 |
| BtsI | GCAGTG | 4 cut(s) | 805, 1120, 1303, 2448 |
| BveI | ACCTGC | 2 cut(s) | 763, 1425 |
| Cac8I | GCNNGC | 9 cut(s) | 338, 414, 483, 1623, 2010, 2598, 3120, 3585, 3732 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1195, 1850, 2597 |
| CciI | TCATGA | 2 cut(s) | 853, 3997 |
| CfoI | GCGC | 2 cut(s) | 7, 4104 |
| Cfr13I | GGNCC | 8 cut(s) | 912, 1022, 2558, 2594, 2801, 3080, 3791, 3858 |
| CseI | GACGC | 1 cut(s) | 3826 |
| Csp6I | GTAC | 9 cut(s) | 442, 758, 1652, 1842, 1862, 2702, 2786, 3629, 3761 |
| CviQI | GTAC | 9 cut(s) | 442, 758, 1652, 1842, 1862, 2702, 2786, 3629, 3761 |
| DraI | TTTAAA | 1 cut(s) | 3423 |
| Eam1104I | CTCTTC | 5 cut(s) | 14, 864, 2101, 2721, 3252 |
| EarI | CTCTTC | 5 cut(s) | 14, 864, 2101, 2721, 3252 |
| EciI | GGCGGA | 3 cut(s) | 2178, 2307, 2388 |
| Ecl136II | GAGCTC | 2 cut(s) | 2154, 3995 |
| Eco130I | CCWWGG | 5 cut(s) | 978, 1747, 2973, 3192, 3861 |
| Eco147I | AGGCCT | 1 cut(s) | 2959 |
| Eco24I | GRGCYC | 3 cut(s) | 2156, 3589, 3997 |
| Eco32I | GATATC | 2 cut(s) | 802, 1727 |
| Eco47I | GGWCC | 7 cut(s) | 912, 1022, 2558, 2801, 3080, 3791, 3858 |
| Eco53kI | GAGCTC | 2 cut(s) | 2154, 3995 |
| Eco57I | CTGAAG | 9 cut(s) | 533, 1938, 2481, 2607, 2912, 3018, 3864, 3870, 4064 |
| Eco88I | CYCGRG | 1 cut(s) | 489 |
| Eco91I | GGTNACC | 2 cut(s) | 350, 2017 |
| EcoICRI | GAGCTC | 2 cut(s) | 2154, 3995 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 907, 2412, 3623, 4046 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2594, 3080, 3858 |
| EcoO65I | GGTNACC | 2 cut(s) | 350, 2017 |
| EcoRI | GAATTC | 1 cut(s) | 4022 |
| EcoRII | CCWGG | 5 cut(s) | 1048, 1879, 2347, 2482, 3396 |
| EcoRV | GATATC | 2 cut(s) | 802, 1727 |
| EcoT14I | CCWWGG | 5 cut(s) | 978, 1747, 2973, 3192, 3861 |
| EcoT22I | ATGCAT | 3 cut(s) | 375, 3615, 3904 |
| EcoT38I | GRGCYC | 3 cut(s) | 2156, 3589, 3997 |
| ErhI | CCWWGG | 5 cut(s) | 978, 1747, 2973, 3192, 3861 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1056, 1088, 2654, 2686, 3106, 3138 |
| FaqI | GGGAC | 5 cut(s) | 1251, 1491, 2493, 2544, 2847 |
| FauI | CCCGC | 2 cut(s) | 3111, 4066 |
| FbaI | TGATCA | 2 cut(s) | 1771, 3217 |
| FblI | GTMKAC | 1 cut(s) | 126 |
| FriOI | GRGCYC | 3 cut(s) | 2156, 3589, 3997 |
| FspBI | CTAG | 6 cut(s) | 593, 788, 833, 1839, 2772, 3326 |
| GlaI | GCGC | 2 cut(s) | 6, 4103 |
| GsuI | CTGGAG | 6 cut(s) | 1145, 1407, 2313, 2631, 2832, 2964 |
| HaeII | RGCGCY | 2 cut(s) | 8, 4105 |
| HaeIII | GGCC | 8 cut(s) | 45, 404, 586, 902, 1071, 1621, 2596, 2959 |
| HapII | CCGG | 4 cut(s) | 433, 1020, 2799, 3589 |
| HgaI | GACGC | 1 cut(s) | 3826 |
| HhaI | GCGC | 2 cut(s) | 7, 4104 |
| Hin1I | GRCGYC | 1 cut(s) | 3067 |
| Hin6I | GCGC | 2 cut(s) | 5, 4102 |
| HinP1I | GCGC | 2 cut(s) | 5, 4102 |
| HincII | GTYRAC | 3 cut(s) | 149, 2163, 3771 |
| HindII | GTYRAC | 3 cut(s) | 149, 2163, 3771 |
| HindIII | AAGCTT | 1 cut(s) | 1659 |
| HpaII | CCGG | 4 cut(s) | 433, 1020, 2799, 3589 |
| HphI | GGTGA | 6 cut(s) | 344, 504, 833, 1698, 1920, 3181 |
| Hpy99I | CGWCG | 1 cut(s) | 3072 |
| HpyCH4IV | ACGT | 5 cut(s) | 99, 461, 865, 2587, 3067 |
| HpySE526I | ACGT | 5 cut(s) | 99, 461, 865, 2587, 3067 |
| Hsp92I | GRCGYC | 1 cut(s) | 3067 |
| HspAI | GCGC | 2 cut(s) | 5, 4102 |
| Ksp22I | TGATCA | 2 cut(s) | 1771, 3217 |
| LguI | GCTCTTC | 1 cut(s) | 14 |
| MaeI | CTAG | 6 cut(s) | 593, 788, 833, 1839, 2772, 3326 |
| MaeII | ACGT | 5 cut(s) | 99, 461, 865, 2587, 3067 |
| MaeIII | GTNAC | 4 cut(s) | 350, 510, 1813, 2017 |
| MfeI | CAATTG | 2 cut(s) | 1038, 3704 |
| MflI | RGATCY | 3 cut(s) | 691, 1104, 3925 |
| MhlI | GDGCHC | 9 cut(s) | 366, 456, 604, 1161, 1738, 2156, 3189, 3589, 3997 |
| MmeI | TCCRAC | 4 cut(s) | 553, 1639, 3053, 3272 |
| Mph1103I | ATGCAT | 3 cut(s) | 375, 3615, 3904 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4081 |
| MslI | CAYNNNNRTG | 7 cut(s) | 357, 810, 1274, 1296, 1382, 1514, 2221 |
| MspA1I | CMGCKG | 9 cut(s) | 517, 538, 1165, 1847, 1888, 2015, 2182, 2501, 3103 |
| MspI | CCGG | 4 cut(s) | 433, 1020, 2799, 3589 |
| MspR9I | CCNGG | 7 cut(s) | 1050, 1881, 2349, 2484, 2799, 3398, 3589 |
| MunI | CAATTG | 2 cut(s) | 1038, 3704 |
| Mva1269I | GAATGC | 2 cut(s) | 1966, 3374 |
| MvaI | CCWGG | 5 cut(s) | 1050, 1881, 2349, 2484, 3398 |
| MvnI | CGCG | 2 cut(s) | 2848, 3583 |
| NciI | CCSGG | 2 cut(s) | 2799, 3589 |
| NlaIV | GGNNCC | 5 cut(s) | 693, 1485, 2535, 2560, 2979 |
| NmuCI | GTSAC | 3 cut(s) | 350, 510, 1813 |
| NsiI | ATGCAT | 3 cut(s) | 375, 3615, 3904 |
| NspI | RCATGY | 1 cut(s) | 2995 |
| NspV | TTCGAA | 1 cut(s) | 883 |
| OliI | CACNNNNGTG | 3 cut(s) | 1274, 1382, 1514 |
| PaeR7I | CTCGAG | 1 cut(s) | 489 |
| PagI | TCATGA | 2 cut(s) | 853, 3997 |
| PceI | AGGCCT | 1 cut(s) | 2959 |
| PciI | ACATGT | 1 cut(s) | 2991 |
| PciSI | GCTCTTC | 1 cut(s) | 14 |
| PctI | GAATGC | 2 cut(s) | 1966, 3374 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4081 |
| PfeI | GAWTC | 6 cut(s) | 520, 1016, 2666, 2887, 3514, 4094 |
| PflFI | GACNNNGTC | 1 cut(s) | 2838 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2483, 2810 |
| PfoI | TCCNGGA | 2 cut(s) | 2347, 2797 |
| PpuMI | RGGWCCY | 2 cut(s) | 3080, 3858 |
| PscI | ACATGT | 1 cut(s) | 2991 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1912 |
| PshBI | ATTAAT | 2 cut(s) | 632, 3332 |
| PsiI | TTATAA | 3 cut(s) | 908, 3126, 3282 |
| Psp124BI | GAGCTC | 2 cut(s) | 2156, 3997 |
| Psp5II | RGGWCCY | 2 cut(s) | 3080, 3858 |
| Psp6I | CCWGG | 5 cut(s) | 1048, 1879, 2347, 2482, 3396 |
| PspEI | GGTNACC | 2 cut(s) | 350, 2017 |
| PspGI | CCWGG | 5 cut(s) | 1048, 1879, 2347, 2482, 3396 |
| PspN4I | GGNNCC | 5 cut(s) | 693, 1485, 2535, 2560, 2979 |
| PspPI | GGNCC | 8 cut(s) | 912, 1022, 2558, 2594, 2801, 3080, 3791, 3858 |
| PspPPI | RGGWCCY | 2 cut(s) | 3080, 3858 |
| PstI | CTGCAG | 3 cut(s) | 504, 2455, 3022 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1195, 1850, 2597 |
| PsuI | RGATCY | 3 cut(s) | 691, 1104, 3925 |
| PsyI | GACNNNGTC | 1 cut(s) | 2838 |
| PvuII | CAGCTG | 5 cut(s) | 538, 1847, 1888, 2501, 3103 |
| RsaI | GTAC | 9 cut(s) | 443, 759, 1653, 1843, 1863, 2703, 2787, 3630, 3762 |
| RsaNI | GTAC | 9 cut(s) | 442, 758, 1652, 1842, 1862, 2702, 2786, 3629, 3761 |
| RseI | CAYNNNNRTG | 7 cut(s) | 357, 810, 1274, 1296, 1382, 1514, 2221 |
| SacI | GAGCTC | 2 cut(s) | 2156, 3997 |
| SapI | GCTCTTC | 1 cut(s) | 14 |
| Sau96I | GGNCC | 8 cut(s) | 912, 1022, 2558, 2594, 2801, 3080, 3791, 3858 |
| ScrFI | CCNGG | 7 cut(s) | 1050, 1881, 2349, 2484, 2799, 3398, 3589 |
| SduI | GDGCHC | 9 cut(s) | 366, 456, 604, 1161, 1738, 2156, 3189, 3589, 3997 |
| SfcI | CTRYAG | 6 cut(s) | 500, 1314, 1557, 1968, 2451, 3018 |
| Sfr274I | CTCGAG | 1 cut(s) | 489 |
| SfuI | TTCGAA | 1 cut(s) | 883 |
| SinI | GGWCC | 7 cut(s) | 912, 1022, 2558, 2801, 3080, 3791, 3858 |
| SlaI | CTCGAG | 1 cut(s) | 489 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 357, 810, 1274, 1296, 1382, 1514, 2221 |
| SmlI | CTYRAG | 4 cut(s) | 319, 489, 3002, 3272 |
| SmoI | CTYRAG | 4 cut(s) | 319, 489, 3002, 3272 |
| SpeI | ACTAGT | 1 cut(s) | 787 |
| SseBI | AGGCCT | 1 cut(s) | 2959 |
| SspI | AATATT | 3 cut(s) | 672, 919, 4135 |
| SspMI | CTAG | 6 cut(s) | 593, 788, 833, 1839, 2772, 3326 |
| SstI | GAGCTC | 2 cut(s) | 2156, 3997 |
| StuI | AGGCCT | 1 cut(s) | 2959 |
| StyD4I | CCNGG | 7 cut(s) | 1048, 1879, 2347, 2482, 2797, 3396, 3587 |
| StyI | CCWWGG | 5 cut(s) | 978, 1747, 2973, 3192, 3861 |
| TaiI | ACGT | 5 cut(s) | 102, 464, 868, 2590, 3070 |
| TaqII | GACCGA | 2 cut(s) | 338, 1198 |
| TatI | WGTACW | 4 cut(s) | 441, 1651, 1841, 3760 |
| TauI | GCSGC | 1 cut(s) | 37 |
| TfiI | GAWTC | 6 cut(s) | 520, 1016, 2666, 2887, 3514, 4094 |
| TseFI | GTSAC | 3 cut(s) | 350, 510, 1813 |
| Tsp45I | GTSAC | 3 cut(s) | 350, 510, 1813 |
| TspGWI | ACGGA | 6 cut(s) | 110, 143, 1264, 1372, 2278, 3300 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2838 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2483, 2810 |
| VneI | GTGCAC | 1 cut(s) | 1734 |
| VpaK11BI | GGWCC | 7 cut(s) | 912, 1022, 2558, 2801, 3080, 3791, 3858 |
| VspI | ATTAAT | 2 cut(s) | 632, 3332 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 907, 2412, 3623, 4046 |
| XapI | RAATTY | 8 cut(s) | 1634, 2239, 2854, 3046, 3298, 3418, 3457, 4022 |
| XbaI | TCTAGA | 1 cut(s) | 832 |
| XceI | RCATGY | 1 cut(s) | 2995 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3496 |
| XhoI | CTCGAG | 1 cut(s) | 489 |
| XmiI | GTMKAC | 1 cut(s) | 126 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4081 |
| XspI | CTAG | 6 cut(s) | 593, 788, 833, 1839, 2772, 3326 |
| ZraI | GACGTC | 1 cut(s) | 3068 |
| Zsp2I | ATGCAT | 3 cut(s) | 375, 3615, 3904 |