Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001510

Physical Location & Seq

Genomic Coordinates Reverse (-)

3476827 .. 3480096

Gene Structure 3270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1042400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAACGTGGGTTCATGGAGACCGTTGATCAGATTTGCCTACAGAAAAGCTCTACCTGTAGCGGTCCACGTGGCAGTTCATTATCAAGTAGTAGTTCTACAACTACTCCCGCCGTCATCAAAGCCCCAGCTGCAAAGCAAAGATTGGAGAGGACCCATCTTTATCTAACGAACTGTGTATTTGGGGTTTTGATATTCAGAGCAAGAATAATTGGGTGGCCGCCGGTAAGATCGATGAGACAGAAGGCGTTGGTGGTGGTGGAGAGCAGCAGAAAGAATGTAAAAGTGAGTGCAGATGGAGCTCCTTATCTGCGTAAACTAGACTTGGAGGAGTACAAAAGTTATCAGGAGCTATTGACAGCCTTAGACCAAATCAATGAGGTTATGAAACCTGCATTGAAAGGAATGGATCAATATGTGCTGACATATGAAGACAAGTATGGAGACTGGATGTTAGTTGGAGACGTCCCTTGGAAGATGTTTATAGAATCATGCAAGCGTATTCGGTTGATGAAAAGTTCAGATGCCGTTGGGATAGGTACACCGTACATGGCGTCCTGCACGGTTAAAGTATCTCAAGTCAATAACGCATGTTCGGACTTACACTATGACATATTCAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

209

Amino Acids

23.35

Weight (kDa)

9.19

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	2 - 125	1.9e-15	AUX/IAA family
AUX_IAA	PF02309	129 - 180	2.9e-24	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25510
fragaria_vesca	FvH4_1g04230 FvH4_1g04230 FvH4_1g04240 FvH4_1g04240 FvH4_2g30110
malus_domestica	MD02G1042300.v1.1 MD02G1042400.v1.1 MD02G1061700.v1.1 MD02G1061900.v1.1 MD08G1137200.v1.1 MD15G1115800.v1.1
prunus_persica	Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234900_v2.0.a1 Prupe.7G234900_v2.0.a1
pyrus_communis	pycom02g03510 pycom08g11580 pycom15g10440 pycom15g16290 pycom15g16300
rosa_chinensis	RchiOBHm_Chr2g0089791 RchiOBHm_Chr2g0089801 RchiOBHm_Chr6g0312811
rosa_laevigata	RLG00000010296 RLG00000016055 RLG00000016056
rosa_multiflora	Rmu_sc0000665.1_g000009 Rmu_sc0008049.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151610 Rroxscaffold_2G00151620 Rroxscaffold_7G00156470
rosa_rugosa	Rorug02G0003200 Rorug06G0399900
rosa_samantha	Rh2AG048400 Rh2AG048500 Rh2BG047200 Rh2BG047300 Rh2CG049300 Rh2CG049400 Rh2DG048700 Rh2DG048800 Rh6AG516900 Rh6BG528300 Rh6DG519500
rosa_wichuraiana	Rw2G004190 Rw2G004200 Rw6G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	400
AciI	CCGC	3 cut(s)	63, 111, 221
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	218
AcvI	CACGTG	1 cut(s)	71
AcyI	GRCGYC	2 cut(s)	465, 554
AfaI	GTAC	3 cut(s)	335, 541, 548
AgsI	TTSAA	2 cut(s)	400, 619
AluBI	AGCT	4 cut(s)	51, 131, 302, 352
AluI	AGCT	4 cut(s)	51, 131, 302, 352
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	4 cut(s)	14, 232, 438, 456
AlwI	GGATC	1 cut(s)	417
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	131, 267
AspS9I	GGNCC	2 cut(s)	65, 153
AvaII	GGWCC	2 cut(s)	65, 153
BanII	GRGCYC	1 cut(s)	304
BbrPI	CACGTG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	118, 279
BccI	CCATC	2 cut(s)	165, 290
BceAI	ACGGC	2 cut(s)	98, 512
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	4 cut(s)	14, 232, 438, 456
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	2 cut(s)	41, 58
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	3 cut(s)	132, 221, 268
BlsI	GCNGC	3 cut(s)	133, 222, 269
Bme18I	GGWCC	2 cut(s)	65, 153
BmgT120I	GGNCC	2 cut(s)	65, 153
BmiI	GGNNCC	1 cut(s)	155
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	561
Bsa29I	ATCGAT	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	71
BsaHI	GRCGYC	2 cut(s)	465, 554
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	452
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	118, 279
BseYI	CCCAGC	1 cut(s)	127
BsgI	GTGCAG	2 cut(s)	312, 544
BshFI	GGCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	452
BsmAI	GTCTC	4 cut(s)	14, 232, 438, 456
BsmBI	CGTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	28, 230, 409
BspACI	CCGC	3 cut(s)	63, 111, 221
BspANI	GGCC	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	417
BspTNI	GGTCTC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	28, 230, 409
BssNI	GRCGYC	2 cut(s)	465, 554
BssT1I	CCWWGG	1 cut(s)	470
Bst4CI	ACNGT	4 cut(s)	25, 176, 546, 565
BstACI	GRCGYC	2 cut(s)	465, 554
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	3 cut(s)	31, 233, 412
BstMAI	GTCTC	4 cut(s)	14, 232, 438, 456
BstMBI	GATC	3 cut(s)	28, 230, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 299
BstNSI	RCATGY	1 cut(s)	594
BstSFI	CTRYAG	2 cut(s)	41, 58
BstV1I	GCAGC	2 cut(s)	118, 279
BstV2I	GAAGAC	1 cut(s)	438
Bsu15I	ATCGAT	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	497
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	65, 153
ClaI	ATCGAT	1 cut(s)	233
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	3 cut(s)	334, 540, 547
CviAII	CATG	4 cut(s)	16, 492, 550, 591
CviJI	RGCY	7 cut(s)	51, 125, 131, 220, 302, 352, 362
CviKI_1	RGCY	7 cut(s)	51, 125, 131, 220, 302, 352, 362
CviQI	GTAC	3 cut(s)	334, 540, 547
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	3 cut(s)	30, 232, 411
DpnII	GATC	3 cut(s)	28, 230, 409
EaeI	YGGCCR	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	65, 153
Eco53kI	GAGCTC	1 cut(s)	302
Eco72I	CACGTG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	4 cut(s)	19, 495, 553, 594
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	4 cut(s)	15, 491, 549, 590
FauI	CCCGC	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	132, 221, 268
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	132, 221, 268
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	3 cut(s)	132, 221, 268
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	543
Hin1I	GRCGYC	2 cut(s)	465, 554
Hin1II	CATG	4 cut(s)	19, 495, 553, 594
HinfI	GANTC	1 cut(s)	488
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	68, 317, 542
Hpy188I	TCNGA	5 cut(s)	33, 200, 523, 598, 626
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	3 cut(s)	68, 317, 542
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	4 cut(s)	25, 176, 546, 565
HpyCH4IV	ACGT	3 cut(s)	7, 70, 465
HpyCH4V	TGCA	5 cut(s)	134, 293, 395, 495, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 299
HpyF3I	CTNAG	1 cut(s)	364
HpySE526I	ACGT	3 cut(s)	7, 70, 465
Hsp92I	GRCGYC	2 cut(s)	465, 554
Hsp92II	CATG	4 cut(s)	19, 495, 553, 594
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	28, 230, 409
LmnI	GCTCC	3 cut(s)	299, 307, 349
LpnPI	CCDG	7 cut(s)	70, 141, 237, 332, 405, 433, 571
Lsp1109I	GCAGC	2 cut(s)	118, 279
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	3 cut(s)	7, 70, 465
MalI	GATC	3 cut(s)	30, 232, 411
MboI	GATC	3 cut(s)	28, 230, 409
MboII	GAAGA	2 cut(s)	443, 487
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	144, 322, 373
MseI	TTAA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	131, 299
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	3 cut(s)	28, 230, 409
NlaIII	CATG	4 cut(s)	19, 495, 553, 594
NlaIV	GGNNCC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	133, 222, 269
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	71
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	153
PspCI	CACGTG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	2 cut(s)	65, 153
PspPPI	RGGWCCY	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	335, 541, 548
RsaNI	GTAC	3 cut(s)	334, 540, 547
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	3 cut(s)	132, 221, 268
Sau3AI	GATC	3 cut(s)	28, 230, 409
Sau96I	GGNCC	2 cut(s)	65, 153
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	2 cut(s)	41, 58
SinI	GGWCC	2 cut(s)	65, 153
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	3 cut(s)	63, 111, 221
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	4 cut(s)	25, 176, 546, 565
TaiI	ACGT	3 cut(s)	10, 73, 468
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	210
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TseI	GCWGC	2 cut(s)	131, 267
TspDTI	ATGAA	6 cut(s)	4, 17, 69, 401, 444, 527
VpaK11BI	GGWCC	2 cut(s)	65, 153
XceI	RCATGY	1 cut(s)	594
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.