Rw2G004190

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001510
Physical Location & Seq
Forward (+)
4001958 .. 4002943
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004190.1

Sequence Viewer

Length: 699 bp
ATGACGATGAATTACAAGGACACTGAGCTGACCTTGGGATTACCTGGTGGTGGAAGCCGTGGTTGTTCAACAGGTGTAGTGGTCTTCGGAGAGTTGATGAAGAGCTCGATGAAACGTGGGTTCATGGATACCGATGATGATCTCAACAAACTTGACCTGGAAAGCTCTAATGGCGAGCCTCGCGGCCAAGCTAAATTGGATGATGGGCCGTCGATGGAAGCAGCTAAGTACACTTCCAGCAGTACCAGTACTACTGCCGTGAAAGCCCCAACTGCAAAGGGTCAAGTAGTTGGGTGGCCGCCGGTGAGATCGACGAGAAATAAGGCCTTGGACTCGAAGAACTTGAAGAACAACAGCAGCAGTAAATATGTGAAAGTGGGTGCTGATGGAGCTCCTTACCTGCGGAAAGTAGATTTAGAGATGTATAAAAGTTACGAGGAGCTATTAACAGCCTTGGAGAAAATTTTCACTTACTTCACCATAAACGGTAAGTACATGGAGGATGATAGGAAGCAACAGATGCTTTTTATGGAGCATGCAGTAGGGAATGGAACGGTAGAATATAATCAATATGTGCTGACATATGAAGATAAGGATAATGACTGGATGTTAGTTGGAGACGTTCCTTGGAAAATGTTTAAAGATTCGTGCAAGCGTATCCGGTTGATGAAAAGTTCAGAAGCTGCGGTCAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

232

Amino Acids

25.92

Weight (kDa)

7.63

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 7 - 229 9.2e-59 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 408
AccII CGCG 1 cut(s) 183
AciI CCGC 4 cut(s) 183, 299, 403, 686
AcoI YGGCCR 2 cut(s) 184, 296
AcsI RAATTY 1 cut(s) 462
AfaI GTAC 4 cut(s) 230, 244, 250, 494
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 2 cut(s) 69, 346
AjnI CCWGG 2 cut(s) 43, 156
AluBI AGCT 8 cut(s) 28, 105, 165, 191, 224, 392, 442, 683
AluI AGCT 8 cut(s) 28, 105, 165, 191, 224, 392, 442, 683
Alw21I GWGCWC 2 cut(s) 107, 394
Alw26I GTCTC 1 cut(s) 612
AlwNI CAGNNNCTG 1 cut(s) 683
AoxI GGCC 4 cut(s) 184, 206, 296, 324
ApeKI GCWGC 3 cut(s) 221, 357, 683
ApoI RAATTY 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 316, 469
BanII GRGCYC 2 cut(s) 107, 394
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 107, 394
BbvI GCAGC 3 cut(s) 233, 369, 670
BccI CCATC 3 cut(s) 197, 208, 380
BceAI ACGGC 3 cut(s) 42, 193, 242
BciT130I CCWGG 2 cut(s) 45, 158
BciVI GTATCC 2 cut(s) 121, 668
BcoDI GTCTC 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 408
BfuI GTATCC 2 cut(s) 121, 668
BisI GCNGC 5 cut(s) 184, 222, 299, 358, 684
BlsI GCNGC 5 cut(s) 185, 223, 300, 359, 685
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 45, 158
BmgT120I GGNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 45, 158
BmsI GCATC 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 5 cut(s) 33, 58, 327, 453, 626
BsaWI WCCGGW 1 cut(s) 660
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 2 cut(s) 246, 608
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 45, 158
BseDI CCNNGG 5 cut(s) 33, 58, 327, 453, 626
BseGI GGATG 3 cut(s) 205, 508, 612
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 246, 608
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 3 cut(s) 233, 369, 670
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 4 cut(s) 186, 208, 298, 326
BsiHKAI GWGCWC 2 cut(s) 107, 394
BsiSI CCGG 2 cut(s) 302, 661
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 612
BsmBI CGTCTC 1 cut(s) 612
BsnI GGCC 4 cut(s) 186, 208, 298, 326
Bsp1286I GDGCHC 2 cut(s) 107, 394
Bsp143I GATC 2 cut(s) 139, 308
BspACI CCGC 4 cut(s) 183, 299, 403, 686
BspANI GGCC 4 cut(s) 186, 208, 298, 326
BspCNI CTCAG 1 cut(s) 16
BspFNI CGCG 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 2 cut(s) 246, 608
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 5 cut(s) 33, 58, 327, 453, 626
BssMI GATC 2 cut(s) 139, 308
BssT1I CCWWGG 4 cut(s) 33, 327, 453, 626
Bst2UI CCWGG 2 cut(s) 45, 158
Bst4CI ACNGT 2 cut(s) 488, 556
Bst6I CTCTTC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 3 cut(s) 176, 537, 653
BstDEI CTNAG 2 cut(s) 24, 225
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 3 cut(s) 205, 508, 612
BstFNI CGCG 1 cut(s) 183
BstKTI GATC 2 cut(s) 142, 311
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 2 cut(s) 139, 308
BstMWI GCNNNNNNNGC 6 cut(s) 171, 180, 263, 272, 389, 520
BstNI CCWGG 2 cut(s) 45, 158
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 43, 156
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 233, 369, 670
BstV2I GAAGAC 1 cut(s) 76
BsuI GTATCC 2 cut(s) 121, 668
BsuRI GGCC 4 cut(s) 186, 208, 298, 326
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 3 cut(s) 205, 508, 612
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 176, 537, 653
CaiI CAGNNNCTG 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 206
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 4 cut(s) 229, 243, 249, 493
CviAII CATG 3 cut(s) 124, 496, 536
CviQI GTAC 4 cut(s) 229, 243, 249, 493
DdeI CTNAG 2 cut(s) 24, 225
DpnI GATC 2 cut(s) 141, 310
DpnII GATC 2 cut(s) 139, 308
DraI TTTAAA 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 184, 296
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Ecl136II GAGCTC 2 cut(s) 105, 392
Eco130I CCWWGG 4 cut(s) 33, 327, 453, 626
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 2 cut(s) 107, 394
Eco53kI GAGCTC 2 cut(s) 105, 392
EcoICRI GAGCTC 2 cut(s) 105, 392
EcoRII CCWGG 2 cut(s) 43, 156
EcoT14I CCWWGG 4 cut(s) 33, 327, 453, 626
EcoT38I GRGCYC 2 cut(s) 107, 394
ErhI CCWWGG 4 cut(s) 33, 327, 453, 626
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 3 cut(s) 127, 499, 539
FatI CATG 3 cut(s) 123, 495, 535
FauNDI CATATG 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 184, 222, 299, 358, 684
FokI GGATG 3 cut(s) 212, 515, 619
FriOI GRGCYC 2 cut(s) 107, 394
Fsp4HI GCNGC 5 cut(s) 184, 222, 299, 358, 684
GluI GCNGC 5 cut(s) 184, 222, 299, 358, 684
HaeIII GGCC 4 cut(s) 186, 208, 298, 326
HapII CCGG 2 cut(s) 302, 661
Hin1II CATG 3 cut(s) 127, 499, 539
HinfI GANTC 2 cut(s) 332, 644
HpaII CCGG 2 cut(s) 302, 661
HphI GGTGA 2 cut(s) 316, 469
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 3 cut(s) 89, 679, 692
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 2 cut(s) 214, 316
HpyCH4III ACNGT 2 cut(s) 488, 556
HpyCH4IV ACGT 2 cut(s) 115, 621
HpyCH4V TGCA 3 cut(s) 275, 539, 651
HpyF10VI GCNNNNNNNGC 6 cut(s) 171, 180, 263, 272, 389, 520
HpyF3I CTNAG 2 cut(s) 24, 225
HpySE526I ACGT 2 cut(s) 115, 621
Hsp92II CATG 3 cut(s) 127, 499, 539
Kzo9I GATC 2 cut(s) 139, 308
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 4 cut(s) 389, 397, 439, 532
Lsp1109I GCAGC 3 cut(s) 233, 369, 670
LweI GCATC 1 cut(s) 510
MabI ACCWGGT 1 cut(s) 43
MaeII ACGT 2 cut(s) 115, 621
MaeIII GTNAC 1 cut(s) 431
MalI GATC 2 cut(s) 141, 310
MboI GATC 2 cut(s) 139, 308
MboII GAAGA 5 cut(s) 76, 112, 349, 358, 599
MhlI GDGCHC 2 cut(s) 107, 394
MluCI AATT 4 cut(s) 10, 194, 462, 694
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 3 cut(s) 189, 430, 493
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 2 cut(s) 446, 639
MspI CCGG 2 cut(s) 302, 661
MspR9I CCNGG 2 cut(s) 45, 158
MvaI CCWGG 2 cut(s) 45, 158
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 6 cut(s) 171, 180, 263, 272, 389, 520
NdeI CATATG 1 cut(s) 583
NdeII GATC 2 cut(s) 139, 308
NlaIII CATG 3 cut(s) 127, 499, 539
NspI RCATGY 1 cut(s) 539
PaeI GCATGC 1 cut(s) 539
PceI AGGCCT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 644
PkrI GCNGC 5 cut(s) 185, 223, 300, 359, 685
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Psp124BI GAGCTC 2 cut(s) 107, 394
Psp6I CCWGG 2 cut(s) 43, 156
PspGI CCWGG 2 cut(s) 43, 156
PspPI GGNCC 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 683
RsaI GTAC 4 cut(s) 230, 244, 250, 494
RsaNI GTAC 4 cut(s) 229, 243, 249, 493
SacI GAGCTC 2 cut(s) 107, 394
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 446, 639
SatI GCNGC 5 cut(s) 184, 222, 299, 358, 684
Sau3AI GATC 2 cut(s) 139, 308
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 45, 158
SduI GDGCHC 2 cut(s) 107, 394
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 510
SgrAI CRCCGGYG 1 cut(s) 301
SphI GCATGC 1 cut(s) 539
Sse9I AATT 4 cut(s) 10, 194, 462, 694
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 4 cut(s) 183, 299, 403, 686
SstI GAGCTC 2 cut(s) 107, 394
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 43, 156
StyI CCWWGG 4 cut(s) 33, 327, 453, 626
TaaI ACNGT 2 cut(s) 488, 556
TaiI ACGT 2 cut(s) 118, 624
TaqI TCGA 4 cut(s) 107, 212, 311, 335
TasI AATT 4 cut(s) 10, 194, 462, 694
TatI WGTACW 3 cut(s) 228, 248, 492
TauI GCSGC 2 cut(s) 186, 301
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 2 cut(s) 446, 639
Tru9I TTAA 2 cut(s) 446, 639
TscAI CASTG 1 cut(s) 28
TseI GCWGC 3 cut(s) 221, 357, 683
TspDTI ATGAA 6 cut(s) 23, 112, 113, 125, 600, 683
TspRI CASTG 1 cut(s) 28
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.