Prupe.7G234800_v2.0.a1

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001510
Physical Location & Seq
Forward (+)
20438451 .. 20440489
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G234800.1

Sequence Viewer

Length: 768 bp
ATGAACATGCCACCGGATGCTGTTGACGATGATGATGTCAGCAAAAGCATGGATTTTAAGGACACTGAGCTCACCTTAGGACTGCCTGGTCGTCCACGACGTTGTTCTTCATCAGCAGCTGATCATTTCTTCGGAGGAATCAAGAGTGGTAGCTGCAGCGTGAAACGGGGGTTCATGGAGACCGTTGATCAGAATATTGGCCTGGAAAGCTTTACCAGCTGCGAGCCACGTAGCCAAATCAAAGTGGATGGGAAGTTGGAAGCTCATTACAACAACTACTCCTCCTCCAGCTCAAGTAGCAGGACAACTACTGCCGTGAAATCCCCAGCTGCAATGGCAAGAGTAGTTGGGTGGCCTCCAGTGAGATCGTTGAGACAGAAGGCGTTGGTGGAGAGCAAGATGAAGAGCAAGAGCACGTATGTAAAAGTGGGTGCAGATGGAGCTCCTTACTTGCGGAAACTAGACTTAGACATGTACAAAAGTTATCAGGAGCTATTGAGAGCCTTAGACCAAATGTTCCCTTCCTTCATTACAAGCGGTAAGTATGTGGAGGATACTACGAGCAACCAGGAGCAGCTTATGAAACCTGCAGTGAAAGGAATGGATGAATATATGGTGATGACATATGAAGACAAGGATGGGGACTGGATGTTAGTTGGAGACGTCCCTTGGAAAATGTTTATAGAATCATGCAAGCGTATTCGGTTGATGAAAAGTTCAGAGGCTGTTGGGATAGCTCCAAGGACGTCTCAGGTTCTGCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

256

Amino Acids

28.41

Weight (kDa)

8.22

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 87
AatII GACGTC 2 cut(s) 666, 749
Acc36I ACCTGC 1 cut(s) 595
AciI CCGC 2 cut(s) 454, 537
AcyI GRCGYC 2 cut(s) 663, 746
AfaI GTAC 1 cut(s) 476
AflIII ACRYGT 1 cut(s) 471
AjnI CCWGG 3 cut(s) 85, 201, 567
Alw21I GWGCWC 3 cut(s) 72, 416, 445
Alw26I GTCTC 4 cut(s) 173, 367, 654, 753
AlwNI CAGNNNCTG 3 cut(s) 119, 725, 757
AoxI GGCC 2 cut(s) 199, 353
ApeKI GCWGC 6 cut(s) 116, 153, 156, 219, 329, 574
AsuHPI GGTGA 2 cut(s) 64, 628
AxyI CCTNAGG 1 cut(s) 76
BanII GRGCYC 2 cut(s) 72, 445
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 3 cut(s) 72, 416, 445
BbvI GCAGC 6 cut(s) 128, 140, 168, 206, 316, 586
BccI CCATC 3 cut(s) 242, 431, 632
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 3 cut(s) 87, 203, 569
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 2 cut(s) 121, 187
BcoDI GTCTC 4 cut(s) 173, 367, 654, 753
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 2 cut(s) 154, 588
BfuAI ACCTGC 1 cut(s) 595
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 6 cut(s) 117, 154, 157, 220, 330, 575
BlsI GCNGC 6 cut(s) 118, 155, 158, 221, 331, 576
Bme1390I CCNGG 3 cut(s) 87, 203, 569
BmrFI CCNGG 3 cut(s) 87, 203, 569
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 636
BpmI CTGGAG 2 cut(s) 271, 342
BpuEI CTTGAG 1 cut(s) 277
BsaAI YACGTR 2 cut(s) 230, 417
BsaHI GRCGYC 2 cut(s) 663, 746
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 668, 740
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 6 cut(s) 263, 266, 269, 293, 296, 299
Bse1I ACTGG 2 cut(s) 359, 650
Bse21I CCTNAGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 3 cut(s) 87, 203, 569
BseDI CCNNGG 2 cut(s) 668, 740
BseGI GGATG 5 cut(s) 22, 253, 610, 643, 654
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 57, 764
BseNI ACTGG 2 cut(s) 359, 650
BseRI GAGGAG 2 cut(s) 271, 274
BseXI GCAGC 6 cut(s) 128, 140, 168, 206, 316, 586
BseYI CCCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 2 cut(s) 201, 355
BsiHKAI GWGCWC 3 cut(s) 72, 416, 445
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 2 cut(s) 650, 656
BsmAI GTCTC 4 cut(s) 173, 367, 654, 753
BsmBI CGTCTC 2 cut(s) 654, 753
BsmFI GGGAC 2 cut(s) 650, 656
BsnI GGCC 2 cut(s) 201, 355
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 72, 416, 445
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 3 cut(s) 121, 187, 365
BspACI CCGC 2 cut(s) 454, 537
BspANI GGCC 2 cut(s) 201, 355
BspCNI CTCAG 2 cut(s) 58, 763
BspMAI CTGCAG 2 cut(s) 158, 592
BspMI ACCTGC 1 cut(s) 595
BspQI GCTCTTC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 2 cut(s) 359, 650
BssECI CCNNGG 2 cut(s) 668, 740
BssMI GATC 3 cut(s) 121, 187, 365
BssNI GRCGYC 2 cut(s) 663, 746
BssT1I CCWWGG 2 cut(s) 668, 740
Bst2UI CCWGG 3 cut(s) 87, 203, 569
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 398
BstACI GRCGYC 2 cut(s) 663, 746
BstAUI TGTACA 1 cut(s) 474
BstBAI YACGTR 2 cut(s) 230, 417
BstC8I GCNNGC 2 cut(s) 224, 695
BstDEI CTNAG 5 cut(s) 66, 76, 466, 505, 750
BstF5I GGATG 5 cut(s) 22, 253, 610, 643, 654
BstKTI GATC 3 cut(s) 124, 190, 368
BstMAI GTCTC 4 cut(s) 173, 367, 654, 753
BstMBI GATC 3 cut(s) 121, 187, 365
BstMWI GCNNNNNNNGC 5 cut(s) 207, 216, 297, 335, 440
BstNI CCWGG 3 cut(s) 87, 203, 569
BstNSI RCATGY 2 cut(s) 10, 475
BstSCI CCNGG 3 cut(s) 85, 201, 567
BstSFI CTRYAG 2 cut(s) 154, 588
BstV1I GCAGC 6 cut(s) 128, 140, 168, 206, 316, 586
BstV2I GAAGAC 1 cut(s) 636
Bsu36I CCTNAGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 2 cut(s) 201, 355
BtsCI GGATG 5 cut(s) 22, 253, 610, 643, 654
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 3 cut(s) 63, 366, 597
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 224, 695
CaiI CAGNNNCTG 3 cut(s) 119, 725, 757
Csp6I GTAC 1 cut(s) 475
CviAII CATG 5 cut(s) 7, 49, 175, 472, 690
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 5 cut(s) 66, 76, 466, 505, 750
DpnI GATC 3 cut(s) 123, 189, 367
DpnII GATC 3 cut(s) 121, 187, 365
DrdI GACNNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Ecl136II GAGCTC 2 cut(s) 70, 443
Eco130I CCWWGG 2 cut(s) 668, 740
Eco24I GRGCYC 2 cut(s) 72, 445
Eco31I GGTCTC 1 cut(s) 173
Eco53kI GAGCTC 2 cut(s) 70, 443
Eco81I CCTNAGG 1 cut(s) 76
EcoICRI GAGCTC 2 cut(s) 70, 443
EcoRII CCWGG 3 cut(s) 85, 201, 567
EcoT14I CCWWGG 2 cut(s) 668, 740
EcoT38I GRGCYC 2 cut(s) 72, 445
ErhI CCWWGG 2 cut(s) 668, 740
Esp3I CGTCTC 2 cut(s) 654, 753
FaeI CATG 5 cut(s) 10, 52, 178, 475, 693
FaqI GGGAC 2 cut(s) 650, 656
FatI CATG 5 cut(s) 6, 48, 174, 471, 689
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 2 cut(s) 121, 187
Fnu4HI GCNGC 6 cut(s) 117, 154, 157, 220, 330, 575
FokI GGATG 5 cut(s) 29, 260, 617, 650, 661
FriOI GRGCYC 2 cut(s) 72, 445
Fsp4HI GCNGC 6 cut(s) 117, 154, 157, 220, 330, 575
FspBI CTAG 1 cut(s) 461
GluI GCNGC 6 cut(s) 117, 154, 157, 220, 330, 575
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 271, 342
HaeIII GGCC 2 cut(s) 201, 355
HapII CCGG 1 cut(s) 14
Hin1I GRCGYC 2 cut(s) 663, 746
Hin1II CATG 5 cut(s) 10, 52, 178, 475, 693
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 2 cut(s) 138, 686
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 64, 628
Hpy166II GTNNAC 2 cut(s) 25, 95
Hpy188I TCNGA 3 cut(s) 134, 192, 721
Hpy188III TCNNGA 2 cut(s) 142, 488
Hpy8I GTNNAC 2 cut(s) 25, 95
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 373, 531, 535
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 5 cut(s) 100, 229, 416, 663, 746
HpyCH4V TGCA 5 cut(s) 156, 332, 434, 590, 693
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 216, 297, 335, 440
HpyF3I CTNAG 5 cut(s) 66, 76, 466, 505, 750
HpySE526I ACGT 5 cut(s) 100, 229, 416, 663, 746
Hsp92I GRCGYC 2 cut(s) 663, 746
Hsp92II CATG 5 cut(s) 10, 52, 178, 475, 693
Ksp22I TGATCA 2 cut(s) 121, 187
Kzo9I GATC 3 cut(s) 121, 187, 365
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 5 cut(s) 440, 448, 490, 571, 742
Lsp1109I GCAGC 6 cut(s) 128, 140, 168, 206, 316, 586
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 461
MaeII ACGT 5 cut(s) 100, 229, 416, 663, 746
MalI GATC 3 cut(s) 123, 189, 367
MboI GATC 3 cut(s) 121, 187, 365
MboII GAAGA 4 cut(s) 99, 121, 415, 641
MhlI GDGCHC 3 cut(s) 72, 416, 445
MmeI TCCRAC 2 cut(s) 237, 637
MnlI CCTC 6 cut(s) 128, 292, 295, 366, 544, 715
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 3 cut(s) 119, 219, 329
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 87, 203, 569
MvaI CCWGG 3 cut(s) 87, 203, 569
MwoI GCNNNNNNNGC 5 cut(s) 207, 216, 297, 335, 440
NdeI CATATG 1 cut(s) 625
NdeII GATC 3 cut(s) 121, 187, 365
NlaIII CATG 5 cut(s) 10, 52, 178, 475, 693
NspI RCATGY 2 cut(s) 10, 475
PciI ACATGT 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PfeI GAWTC 2 cut(s) 138, 686
PkrI GCNGC 6 cut(s) 118, 155, 158, 221, 331, 576
Ppu21I YACGTR 2 cut(s) 230, 417
PscI ACATGT 1 cut(s) 471
Psp124BI GAGCTC 2 cut(s) 72, 445
Psp6I CCWGG 3 cut(s) 85, 201, 567
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 3 cut(s) 85, 201, 567
PstI CTGCAG 2 cut(s) 158, 592
PstNI CAGNNNCTG 3 cut(s) 119, 725, 757
PvuII CAGCTG 3 cut(s) 119, 219, 329
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SacI GAGCTC 2 cut(s) 72, 445
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 6 cut(s) 117, 154, 157, 220, 330, 575
Sau3AI GATC 3 cut(s) 121, 187, 365
ScrFI CCNGG 3 cut(s) 87, 203, 569
SduI GDGCHC 3 cut(s) 72, 416, 445
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 2 cut(s) 154, 588
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SsiI CCGC 2 cut(s) 454, 537
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 2 cut(s) 72, 445
StyD4I CCNGG 3 cut(s) 85, 201, 567
StyI CCWWGG 2 cut(s) 668, 740
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 5 cut(s) 103, 232, 419, 666, 749
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 2 cut(s) 138, 686
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 3 cut(s) 70, 366, 597
TseI GCWGC 6 cut(s) 116, 153, 156, 219, 329, 574
TspDTI ATGAA 9 cut(s) 17, 99, 163, 416, 517, 596, 621, 642, 725
TspRI CASTG 3 cut(s) 70, 366, 597
XceI RCATGY 2 cut(s) 10, 475
XspI CTAG 1 cut(s) 461
ZraI GACGTC 2 cut(s) 664, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.