Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001510

Physical Location & Seq

Genomic Coordinates Reverse (-)

8882468 .. 8884838

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGTTTAAGCAGTTTCTGAGTAAACTTCCGAGGAAGTCTTCAAAATCTGATTCAGGAGAGCTGAATCGTTCGAGTTCGGGTCCGGTATCGTCTCCGGTTCAGAGATCCGGTACTAGTGGTGGTGGTTCGGGTCCGGTTCGATCTAACTCAGGGAAGCGTATGTCATCTGCTGTGTTCCCAGCTAGTGTTGTTGCTGGTATTGAGCCTTTGGTACCGTTTAAGGATGTACCAAGCTCTGAGAAGTTGAATCTCTTTGTGAGTAAAGTTAGTCTCTGTTGTGTGACATTTGATTTCTCTGACCCTGGTAAAAACTCTATAGAGAAAGATGTTAAAAGGCAGACATTGTTGGAGCTTTTGGATTTTGTAGCTTCAGGGTCTGTTAAGTTCACTGAGCCAGCTATTCTTGCAATGTGTAGAATGTGTGCTGTTAATCTCTTTAGGGTCTTTCCTCCGAATTATCGGTCTAGTTCTGGTGGCGAAAACGATGATGATGAACCGATGTTTGACCCTGCTTGGCCTCATTTGCAGATTGTGTATGATTTGTTGCTTAAGTTTATCACTTCTCCGTGTCTTGATGCTAAAGTGGCAAAAAAGTATTTAGATCATGCTTTCATTGTGAGGTTGCTTGACTTGTTTGATTCGGAGGATCCTAGAGAACGGGAGTGTTTGAAGACGATTCTGCATCGGGTATATGGGAAGTTCATGGTTCATAGGCCATTTGTACGCAAGTCCATGAGCAATATATTCTACCGGTTTGTGTTTGAGACAGAGAAGCATAGCGGAATCGCTGAGCTTTTGGAGATTTTCGGGAGTATAGTGAGTGGATTTGCGTTGCCTTTGAAAGAAGAGCATAAGATCTTCTTGTGGAGAGTGTTGATTCCATTGCACAAGCCTAAATCTGTTGGAAACTACTTTCAGCAGCTTTCTTATTGTATCACTCAGTTCATAGATAAAGAGCCGAAACTAGGCAGTGTTGTGATAAAGGGTTTGTTGAAGTTCTGGCCTATCACGAATAGTCAGAAGGAAGTGATGTTTCTCGGGGAGGTCGAAGAAATTGTAGAAGCAATGAGTGTGATGGAGTTTCAAAAGATCATGGTCCCTTTGTTCTTGCGGATTGCTTGTTGTGTCACCAGTTCCCACTTTCAGGTTTCTGAAAGAGCTTTATTCTTGTGGAACAACGATCAAATTGTAAACTTGATTGGACATAACCGGCAAGCCATCCTACCAATCATGTTCACTGCTTTAGAAAAGAATGCTCAGAACCACTGGAACCAATCCGTGCTAAACTTAACCTTAAACGTACGAAAAATGTTCTGCGAAATGGACGAGGCTCTGTTCATGTCTTGCCACGCCCGCTTTAAGGAGGACGAAGCAAAGCAATGTTCTGCTGCGGAAAAGAGGAAAGAAGTATGGGCAAGGCTAGAGAATGCAGCAAGTATGAAGCCGATAACAGGAAAGACTGCTGTTCTGGTAACTCCTCGAGCAACCTCCATCGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

500

Amino Acids

56.42

Weight (kDa)

8.9

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B56	PF01603	71 - 478	1e-180	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25510
fragaria_vesca	FvH4_1g04230 FvH4_1g04230 FvH4_1g04240 FvH4_1g04240 FvH4_2g30110
malus_domestica	MD02G1042300.v1.1 MD02G1042400.v1.1 MD02G1061700.v1.1 MD02G1061900.v1.1 MD08G1137200.v1.1 MD15G1115800.v1.1
prunus_persica	Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234900_v2.0.a1 Prupe.7G234900_v2.0.a1
pyrus_communis	pycom02g03510 pycom08g11580 pycom15g10440 pycom15g16290 pycom15g16300
rosa_chinensis	RchiOBHm_Chr2g0089791 RchiOBHm_Chr2g0089801 RchiOBHm_Chr6g0312811
rosa_laevigata	RLG00000010296 RLG00000016055 RLG00000016056
rosa_multiflora	Rmu_sc0000665.1_g000009 Rmu_sc0008049.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151610 Rroxscaffold_2G00151620 Rroxscaffold_7G00156470
rosa_rugosa	Rorug02G0003200 Rorug06G0399900
rosa_samantha	Rh2AG048400 Rh2AG048500 Rh2BG047200 Rh2BG047300 Rh2CG049300 Rh2CG049400 Rh2DG048700 Rh2DG048800 Rh6AG516900 Rh6BG528300 Rh6DG519500
rosa_wichuraiana	Rw2G004190 Rw2G004200 Rw6G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	4 cut(s)	780, 1111, 1354, 1391
AclWI	GGATC	3 cut(s)	99, 641, 654
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	5 cut(s)	112, 213, 228, 723, 1302
AfiI	CCNNNNNNNGG	4 cut(s)	965, 1144, 1360, 1451
AflII	CTTAAG	1 cut(s)	548
AgeI	ACCGGT	1 cut(s)	750
AgsI	TTSAA	6 cut(s)	42, 247, 670, 841, 994, 1085
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	9 cut(s)	61, 182, 234, 352, 368, 398, 793, 922, 1160
AluI	AGCT	9 cut(s)	61, 182, 234, 352, 368, 398, 793, 922, 1160
Alw26I	GTCTC	3 cut(s)	96, 275, 758
AlwI	GGATC	3 cut(s)	99, 641, 654
AlwNI	CAGNNNCTG	2 cut(s)	16, 377
Ama87I	CYCGRG	2 cut(s)	1037, 1479
AoxI	GGCC	3 cut(s)	515, 713, 1001
ApeKI	GCWGC	3 cut(s)	919, 1388, 1430
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AsiGI	ACCGGT	1 cut(s)	750
Asp718I	GGTACC	1 cut(s)	211
AspS9I	GGNCC	3 cut(s)	80, 131, 1096
AsuHPI	GGTGA	1 cut(s)	1120
AvaI	CYCGRG	2 cut(s)	1037, 1479
AvaII	GGWCC	3 cut(s)	80, 131, 1096
BamHI	GGATCC	1 cut(s)	646
BanI	GGYRCC	1 cut(s)	211
BbsI	GAAGAC	2 cut(s)	30, 677
BbvI	GCAGC	3 cut(s)	931, 1375, 1442
BccI	CCATC	3 cut(s)	1069, 1226, 1499
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	3 cut(s)	96, 275, 758
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	6 cut(s)	114, 183, 465, 651, 965, 1421
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	548
BglII	AGATCT	1 cut(s)	855
BisI	GCNGC	3 cut(s)	920, 1389, 1431
BlpI	GCTNAGC	1 cut(s)	789
BlsI	GCNGC	3 cut(s)	921, 1390, 1432
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	3 cut(s)	80, 131, 1096
BmeT110I	CYCGRG	2 cut(s)	1037, 1479
BmgT120I	GGNCC	3 cut(s)	80, 131, 1096
BmiI	GGNNCC	6 cut(s)	81, 132, 213, 648, 1098, 1271
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	565, 691
BpiI	GAAGAC	2 cut(s)	30, 677
Bpu1102I	GCTNAGC	1 cut(s)	789
BsaJI	CCNNGG	2 cut(s)	29, 301
BsaWI	WCCGGW	5 cut(s)	82, 94, 107, 133, 750
Bsc4I	CCNNNNNNNGG	4 cut(s)	965, 1144, 1360, 1451
Bse118I	RCCGGY	2 cut(s)	750, 1209
Bse1I	ACTGG	2 cut(s)	1131, 1271
Bse3DI	GCAATG	4 cut(s)	414, 881, 1071, 1385
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	29, 301
BseGI	GGATG	2 cut(s)	229, 1218
BseLI	CCNNNNNNNGG	4 cut(s)	965, 1144, 1360, 1451
BseMI	GCAATG	4 cut(s)	414, 881, 1071, 1385
BseMII	CTCAG	7 cut(s)	8, 162, 228, 381, 780, 953, 1271
BseNI	ACTGG	2 cut(s)	1131, 1271
BseRI	GAGGAG	1 cut(s)	1467
BseXI	GCAGC	3 cut(s)	931, 1375, 1442
BseYI	CCCAGC	1 cut(s)	178
BshFI	GGCC	3 cut(s)	517, 715, 1003
BshNI	GGYRCC	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	750
BsiHKCI	CYCGRG	2 cut(s)	1037, 1479
BsiSI	CCGG	6 cut(s)	83, 95, 108, 134, 751, 1210
BsiWI	CGTACG	1 cut(s)	1300
BslFI	GGGAC	1 cut(s)	1082
BslI	CCNNNNNNNGG	4 cut(s)	965, 1144, 1360, 1451
BsmAI	GTCTC	3 cut(s)	96, 275, 758
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	1082
BsmI	GAATGC	2 cut(s)	1258, 1432
BsnI	GGCC	3 cut(s)	517, 715, 1003
BsoBI	CYCGRG	2 cut(s)	1037, 1479
Bsp143I	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
Bsp1720I	GCTNAGC	1 cut(s)	789
BspACI	CCGC	4 cut(s)	780, 1111, 1354, 1391
BspANI	GGCC	3 cut(s)	517, 715, 1003
BspCNI	CTCAG	7 cut(s)	9, 161, 229, 382, 781, 952, 1270
BspLI	GGNNCC	6 cut(s)	81, 132, 213, 648, 1098, 1271
BspPI	GGATC	3 cut(s)	99, 641, 654
BspQI	GCTCTTC	1 cut(s)	840
BspT107I	GGYRCC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	4 cut(s)	414, 881, 1071, 1385
BsrFI	RCCGGY	2 cut(s)	750, 1209
BsrI	ACTGG	2 cut(s)	1131, 1271
BssAI	RCCGGY	2 cut(s)	750, 1209
BssECI	CCNNGG	2 cut(s)	29, 301
BssMI	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	840
BstAFI	CTTAAG	1 cut(s)	548
BstC8I	GCNNGC	4 cut(s)	396, 1215, 1354, 1498
BstDEI	CTNAG	7 cut(s)	17, 148, 237, 390, 789, 939, 1257
BstF5I	GGATG	2 cut(s)	229, 1218
BstKTI	GATC	7 cut(s)	107, 143, 604, 649, 858, 1092, 1183
BstMAI	GTCTC	3 cut(s)	96, 275, 758
BstMBI	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
BstMWI	GCNNNNNNNGC	4 cut(s)	404, 523, 584, 1353
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	931, 1375, 1442
BstV2I	GAAGAC	2 cut(s)	30, 677
BstX2I	RGATCY	3 cut(s)	104, 646, 855
BstYI	RGATCY	3 cut(s)	104, 646, 855
BsuRI	GGCC	3 cut(s)	517, 715, 1003
BtgZI	GCGATG	1 cut(s)	1477
BtsCI	GGATG	2 cut(s)	229, 1218
BtsI	GCAGTG	2 cut(s)	976, 1236
BtsIMutI	CAGTG	4 cut(s)	387, 976, 1236, 1264
Cac8I	GCNNGC	4 cut(s)	396, 1215, 1354, 1498
CaiI	CAGNNNCTG	2 cut(s)	16, 377
Cfr10I	RCCGGY	2 cut(s)	750, 1209
Cfr13I	GGNCC	3 cut(s)	80, 131, 1096
Csp6I	GTAC	5 cut(s)	111, 212, 227, 722, 1301
CspAI	ACCGGT	1 cut(s)	750
CviAII	CATG	6 cut(s)	605, 703, 733, 1093, 1231, 1339
CviQI	GTAC	5 cut(s)	111, 212, 227, 722, 1301
DdeI	CTNAG	7 cut(s)	17, 148, 237, 390, 789, 939, 1257
DpnI	GATC	7 cut(s)	106, 142, 603, 648, 857, 1091, 1182
DpnII	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco47I	GGWCC	3 cut(s)	80, 131, 1096
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	2 cut(s)	1037, 1479
EcoRII	CCWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	6 cut(s)	608, 706, 736, 1096, 1234, 1342
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	1 cut(s)	1082
FatI	CATG	6 cut(s)	604, 702, 732, 1092, 1230, 1338
FauI	CCCGC	1 cut(s)	1361
Fnu4HI	GCNGC	3 cut(s)	920, 1389, 1431
FokI	GGATG	2 cut(s)	236, 1205
Fsp4HI	GCNGC	3 cut(s)	920, 1389, 1431
FspBI	CTAG	6 cut(s)	114, 183, 465, 651, 965, 1421
GluI	GCNGC	3 cut(s)	920, 1389, 1431
GsaI	CCCAGC	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	517, 715, 1003
HapII	CCGG	6 cut(s)	83, 95, 108, 134, 751, 1210
Hin1II	CATG	6 cut(s)	608, 706, 736, 1096, 1234, 1342
HinfI	GANTC	7 cut(s)	50, 64, 247, 638, 676, 783, 877
HpaII	CCGG	6 cut(s)	83, 95, 108, 134, 751, 1210
HphI	GGTGA	1 cut(s)	1120
Hpy166II	GTNNAC	4 cut(s)	23, 387, 1192, 1236
Hpy188III	TCNNGA	4 cut(s)	54, 572, 808, 1009
Hpy8I	GTNNAC	4 cut(s)	23, 387, 1192, 1236
HpyAV	CCTTC	1 cut(s)	1015
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	1299
HpyCH4V	TGCA	5 cut(s)	407, 526, 682, 886, 1430
HpyF10VI	GCNNNNNNNGC	4 cut(s)	404, 523, 584, 1353
HpyF3I	CTNAG	7 cut(s)	17, 148, 237, 390, 789, 939, 1257
HpySE526I	ACGT	1 cut(s)	1299
Hsp92II	CATG	6 cut(s)	608, 706, 736, 1096, 1234, 1342
KpnI	GGTACC	1 cut(s)	215
Kzo9I	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	3 cut(s)	931, 1375, 1442
LweI	GCATC	2 cut(s)	565, 691
MaeI	CTAG	6 cut(s)	114, 183, 465, 651, 965, 1421
MaeII	ACGT	1 cut(s)	1299
MaeIII	GTNAC	3 cut(s)	280, 1126, 1471
MalI	GATC	7 cut(s)	106, 142, 603, 648, 857, 1091, 1182
MboI	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
MboII	GAAGA	5 cut(s)	30, 682, 850, 857, 1061
MflI	RGATCY	3 cut(s)	104, 646, 855
MluCI	AATT	3 cut(s)	454, 1053, 1185
MmeI	TCCRAC	2 cut(s)	327, 883
MseI	TTAA	9 cut(s)	6, 219, 330, 381, 429, 549, 1289, 1295, 1359
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	6 cut(s)	83, 95, 108, 134, 751, 1210
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	2 cut(s)	1258, 1432
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	404, 523, 584, 1353
NdeII	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
NlaIII	CATG	6 cut(s)	608, 706, 736, 1096, 1234, 1342
NlaIV	GGNNCC	6 cut(s)	81, 132, 213, 648, 1098, 1271
NmuCI	GTSAC	2 cut(s)	280, 1126
PaeR7I	CTCGAG	1 cut(s)	1479
PciSI	GCTCTTC	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	1044
PctI	GAATGC	2 cut(s)	1258, 1432
PfeI	GAWTC	7 cut(s)	50, 64, 247, 638, 676, 783, 877
Pfl23II	CGTACG	1 cut(s)	1300
PinAI	ACCGGT	1 cut(s)	750
PkrI	GCNGC	3 cut(s)	921, 1390, 1432
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	301
PspLI	CGTACG	1 cut(s)	1300
PspN4I	GGNNCC	6 cut(s)	81, 132, 213, 648, 1098, 1271
PspPI	GGNCC	3 cut(s)	80, 131, 1096
PspXI	VCTCGAGB	1 cut(s)	1479
PstNI	CAGNNNCTG	2 cut(s)	16, 377
PsuI	RGATCY	3 cut(s)	104, 646, 855
RsaI	GTAC	5 cut(s)	112, 213, 228, 723, 1302
RsaNI	GTAC	5 cut(s)	111, 212, 227, 722, 1301
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	9 cut(s)	6, 219, 330, 381, 429, 549, 1289, 1295, 1359
SatI	GCNGC	3 cut(s)	920, 1389, 1431
Sau3AI	GATC	7 cut(s)	104, 140, 601, 646, 855, 1089, 1180
Sau96I	GGNCC	3 cut(s)	80, 131, 1096
ScrFI	CCNGG	1 cut(s)	303
SfaNI	GCATC	2 cut(s)	565, 691
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	1479
SinI	GGWCC	3 cut(s)	80, 131, 1096
SlaI	CTCGAG	1 cut(s)	1479
SmlI	CTYRAG	2 cut(s)	548, 1479
SmoI	CTYRAG	2 cut(s)	548, 1479
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	3 cut(s)	454, 1053, 1185
SsiI	CCGC	4 cut(s)	780, 1111, 1354, 1391
SspMI	CTAG	6 cut(s)	114, 183, 465, 651, 965, 1421
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	1 cut(s)	1302
TaqI	TCGA	4 cut(s)	71, 139, 1047, 1480
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	3 cut(s)	454, 1053, 1185
TfiI	GAWTC	7 cut(s)	50, 64, 247, 638, 676, 783, 877
Tru1I	TTAA	9 cut(s)	6, 219, 330, 381, 429, 549, 1289, 1295, 1359
Tru9I	TTAA	9 cut(s)	6, 219, 330, 381, 429, 549, 1289, 1295, 1359
TscAI	CASTG	4 cut(s)	394, 976, 1243, 1271
TseFI	GTSAC	2 cut(s)	280, 1126
TseI	GCWGC	3 cut(s)	919, 1388, 1430
Tsp45I	GTSAC	2 cut(s)	280, 1126
TspDTI	ATGAA	7 cut(s)	507, 601, 691, 698, 934, 1327, 1454
TspGWI	ACGGA	2 cut(s)	555, 1267
TspRI	CASTG	4 cut(s)	394, 976, 1243, 1271
Vha464I	CTTAAG	1 cut(s)	548
VpaK11BI	GGWCC	3 cut(s)	80, 131, 1096
XhoI	CTCGAG	1 cut(s)	1479
XspI	CTAG	6 cut(s)	114, 183, 465, 651, 965, 1421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.