FvH4_1g04240

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001510
Physical Location & Seq
Reverse (-)
2245662 .. 2247416
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04240.t2

Sequence Viewer

Length: 690 bp
ATGGCGATGAGTTATAAGGACACTGAGCTGACCTTGGGATTACCTGGTGGAGGAAGCCGTGGTTATTCCACAGGTGGAGGAGTCTACGGAGAGTTGATGAAACGTGGGTTCATAGAGACCCTTGATGATCCTCACGACCTTGACCTGCTTAGCTCTACCGGAGAGGAGTTTCGTGGCCAAGTTAAACCGGAGGATGAGCAGTCGGAAGCAGCTAACTACTCTTCCATTAGAAACAGTACTACTGCCGTGAAAGCCCCAACTGCAAAGGATCAAGTAGTTGGGTGGCCGCCGGTGAGATCGACGAGAAATAAGGCTTTGGACTCCAAGAACTTAAAGAACATCAGCAGCAGTAAATATGTGAAAGTGGGAGCTGATGGAGCTCCTTACCTGAGGAAAGTAGATTTAGAGATGTATACAAGTTATGAGGAGCTATTAACAGCCATGGAGAAAATTTTCACTTCCTTCACCATAAACGGTAAGCAGTACATGGAGGATGATAGGAAGCAACAGGTGCTTCTTATGAAACATGCAGTAGTGAATGGAATGGTGGAATATAATCAATATGTGCTGACATATGAAGATAAGGATAATGACTGGATGTTAGTTGGAGATGTTCCTTGGAAAATGTTTAAGGAATCGTGCAAACGTATCCGGTTGATGAGAAGTTCAGAATCTGTAGTCAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

230

Amino Acids

25.83

Weight (kDa)

5.85

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 7 - 226 1.8e-57 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 153
AccI GTMKAC 2 cut(s) 84, 413
AciI CCGC 1 cut(s) 287
AclWI GGATC 2 cut(s) 122, 276
AcoI YGGCCR 2 cut(s) 175, 284
AcsI RAATTY 1 cut(s) 450
AfaI GTAC 2 cut(s) 238, 485
AfiI CCNNNNNNNGG 1 cut(s) 50
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 6 cut(s) 28, 153, 212, 371, 380, 430
AluI AGCT 6 cut(s) 28, 153, 212, 371, 380, 430
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 2 cut(s) 122, 276
AlwNI CAGNNNCTG 1 cut(s) 674
AoxI GGCC 2 cut(s) 175, 284
ApeKI GCWGC 2 cut(s) 209, 345
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 304, 457
AxyI CCTNAGG 1 cut(s) 389
BalI TGGCCA 1 cut(s) 177
BanII GRGCYC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 221, 357
BccI CCATC 1 cut(s) 368
BceAI ACGGC 2 cut(s) 42, 230
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 659
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 675
BfuAI ACCTGC 1 cut(s) 153
BfuI GTATCC 1 cut(s) 659
BisI GCNGC 3 cut(s) 210, 287, 346
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 3 cut(s) 211, 288, 347
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 4 cut(s) 33, 58, 441, 617
BsaWI WCCGGW 3 cut(s) 158, 187, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 599
Bse21I CCTNAGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 4 cut(s) 33, 58, 441, 617
BseGI GGATG 3 cut(s) 199, 499, 603
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 15, 380
BseNI ACTGG 1 cut(s) 599
BseRI GAGGAG 3 cut(s) 93, 179, 440
BseXI GCAGC 2 cut(s) 221, 357
BshFI GGCC 2 cut(s) 177, 286
BsiHKAI GWGCWC 1 cut(s) 382
BsiSI CCGG 4 cut(s) 159, 188, 290, 652
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 177, 286
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 3 cut(s) 127, 268, 296
Bsp1720I GCTNAGC 1 cut(s) 149
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 1 cut(s) 287
BspANI GGCC 2 cut(s) 177, 286
BspCNI CTCAG 2 cut(s) 16, 381
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 2 cut(s) 122, 276
BspTNI GGTCTC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 599
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 4 cut(s) 33, 58, 441, 617
BssMI GATC 3 cut(s) 127, 268, 296
BssNAI GTATAC 1 cut(s) 414
BssT1I CCWWGG 3 cut(s) 33, 441, 617
Bst1107I GTATAC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 236, 476
Bst6I CTCTTC 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 511
BstDEI CTNAG 3 cut(s) 24, 149, 389
BstDSI CCRYGG 2 cut(s) 58, 441
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 199, 499, 603
BstKTI GATC 3 cut(s) 130, 271, 299
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 127, 268, 296
BstMWI GCNNNNNNNGC 4 cut(s) 251, 260, 377, 511
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 221, 357
BstZ17I GTATAC 1 cut(s) 414
Bsu36I CCTNAGG 1 cut(s) 389
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 2 cut(s) 177, 286
BtgI CCRYGG 2 cut(s) 58, 441
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 199, 499, 603
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 153
CaiI CAGNNNCTG 1 cut(s) 674
Cfr10I RCCGGY 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 2 cut(s) 237, 484
CviAII CATG 3 cut(s) 442, 487, 527
CviQI GTAC 2 cut(s) 237, 484
DdeI CTNAG 3 cut(s) 24, 149, 389
DpnI GATC 3 cut(s) 129, 270, 298
DpnII GATC 3 cut(s) 127, 268, 296
EaeI YGGCCR 2 cut(s) 175, 284
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 3 cut(s) 33, 441, 617
Eco24I GRGCYC 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 380
Eco81I CCTNAGG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 380
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 3 cut(s) 33, 441, 617
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 3 cut(s) 33, 441, 617
FaeI CATG 3 cut(s) 445, 490, 530
FatI CATG 3 cut(s) 441, 486, 526
FauNDI CATATG 1 cut(s) 574
FblI GTMKAC 2 cut(s) 84, 413
Fnu4HI GCNGC 3 cut(s) 210, 287, 346
FokI GGATG 3 cut(s) 206, 506, 610
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 3 cut(s) 210, 287, 346
GluI GCNGC 3 cut(s) 210, 287, 346
HaeIII GGCC 2 cut(s) 177, 286
HapII CCGG 4 cut(s) 159, 188, 290, 652
Hin1II CATG 3 cut(s) 445, 490, 530
HinfI GANTC 4 cut(s) 81, 320, 635, 671
HpaII CCGG 4 cut(s) 159, 188, 290, 652
HphI GGTGA 2 cut(s) 304, 457
Hpy166II GTNNAC 2 cut(s) 85, 414
Hpy188I TCNGA 3 cut(s) 205, 670, 683
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 85, 414
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 236, 476
HpyCH4IV ACGT 2 cut(s) 103, 646
HpyCH4V TGCA 3 cut(s) 263, 530, 642
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 260, 377, 511
HpyF3I CTNAG 3 cut(s) 24, 149, 389
HpySE526I ACGT 2 cut(s) 103, 646
Hsp92II CATG 3 cut(s) 445, 490, 530
Kzo9I GATC 3 cut(s) 127, 268, 296
LmnI GCTCC 4 cut(s) 368, 377, 385, 427
Lsp1109I GCAGC 2 cut(s) 221, 357
MabI ACCWGGT 1 cut(s) 43
MaeII ACGT 2 cut(s) 103, 646
MalI GATC 3 cut(s) 129, 270, 298
MboI GATC 3 cut(s) 127, 268, 296
MboII GAAGA 2 cut(s) 213, 590
MhlI GDGCHC 1 cut(s) 382
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 2 cut(s) 450, 685
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 2 cut(s) 90, 314
MmeI TCCRAC 2 cut(s) 183, 586
MnlI CCTC 8 cut(s) 44, 71, 141, 157, 184, 384, 418, 484
Mox20I TGGCCA 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 452
MscI TGGCCA 1 cut(s) 177
MseI TTAA 4 cut(s) 183, 332, 434, 630
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 4 cut(s) 159, 188, 290, 652
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 251, 260, 377, 511
NcoI CCATGG 1 cut(s) 441
NdeI CATATG 1 cut(s) 574
NdeII GATC 3 cut(s) 127, 268, 296
NlaIII CATG 3 cut(s) 445, 490, 530
NspI RCATGY 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 635, 671
PkrI GCNGC 3 cut(s) 211, 288, 347
PleI GAGTC 2 cut(s) 89, 314
PpsI GAGTC 2 cut(s) 89, 314
PsiI TTATAA 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 674
RsaI GTAC 2 cut(s) 238, 485
RsaNI GTAC 2 cut(s) 237, 484
SacI GAGCTC 1 cut(s) 382
SaqAI TTAA 4 cut(s) 183, 332, 434, 630
SatI GCNGC 3 cut(s) 210, 287, 346
Sau3AI GATC 3 cut(s) 127, 268, 296
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 2 cut(s) 90, 314
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 382
SexAI ACCWGGT 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 675
SgrAI CRCCGGYG 1 cut(s) 289
Sse9I AATT 2 cut(s) 450, 685
SsiI CCGC 1 cut(s) 287
SstI GAGCTC 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 3 cut(s) 33, 441, 617
TaaI ACNGT 2 cut(s) 236, 476
TaiI ACGT 2 cut(s) 106, 649
TaqI TCGA 1 cut(s) 299
TasI AATT 2 cut(s) 450, 685
TatI WGTACW 2 cut(s) 236, 483
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 2 cut(s) 635, 671
Tru1I TTAA 4 cut(s) 183, 332, 434, 630
Tru9I TTAA 4 cut(s) 183, 332, 434, 630
TscAI CASTG 1 cut(s) 28
TseI GCWGC 2 cut(s) 209, 345
TspDTI ATGAA 4 cut(s) 100, 113, 536, 591
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 450
XceI RCATGY 1 cut(s) 530
XmiI GTMKAC 2 cut(s) 84, 413
XmnI GAANNNNTTC 1 cut(s) 452
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.