Rroxscaffold_2G00151610

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001510
Physical Location & Seq
Forward (+)
88836570 .. 88838224
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151610.1

Sequence Viewer

Length: 849 bp
ATGCTCTATTTATGTCTAAAATGTGCAGGTAGCAGAGTTGCGCCCGGGTTTGGATCTGATACGTACGTACCAGTTAAGAACAAGGAACAAATCCTACGCCGTACTTACACGTACTGGGCTCGCAGGAAAGCTGACGTGAACGTGTGGAATATGACGATGAATTACAAGGACACTGAGCTGACCTTGGGATTACCTGGTGGCGGAAGCCGTGGTTGTTCAACAGGTGTAGTGGTCTTCGGAGAGTTGATGAAGAGCTCGATGAAACGTGGGTTCATGGATACCGATGATGATCTCAACAACCTTGACCTGGAAAGCTCTAATGGCGAGCCTCGTGGCCAAGCTAAATTGGATGATGGGCCGTCGAAGGAAGCAGCCAAGTACTCTTCCGGTAGTACCAGTACTACTGCCGTGAAAGCCCCAACTGCAAAGGGTCAAGTAGTTGGGTGGCCGCCGGTGAGATCGACAAGAAATAAGGCCTTGGACTCGAAGAACTTGAAGAACAACAGCAGCAGTAAATATGTGAAAGTGGGTGCTGATGGAGCTCCTTACCTGCGGAAAGTAGATTTGGAGATGTATAAAAGTTACGAGGAGCTATTAACAGCCTTGGAGAAAATTTTCACTTCCTTCACCATAAACGGTAAGTACATGGAGGATGATAGGAAGCAACAGGTGCTTTTTATGGAACATGCAGTAGTGAATGGAACAGTGGAATATAATCAATATGTGCTGACATATGAAGATAAGGATAATGACTGGATGTTAGTTGGAGACGTTCCTTGGAAAATGTTTAAAGATTCGTGCAAGCGTATCCGGTTGATGAAAAGTTCAGAAGCTGCGGTCAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

282

Amino Acids

31.62

Weight (kDa)

9.03

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 57 - 279 4.9e-59 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 17, 558
AciI CCGC 4 cut(s) 201, 449, 553, 836
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 2 cut(s) 334, 446
AcsI RAATTY 1 cut(s) 612
AfaI GTAC 8 cut(s) 65, 69, 103, 113, 380, 394, 400, 644
AfiI CCNNNNNNNGG 3 cut(s) 50, 200, 307
AflIII ACRYGT 2 cut(s) 108, 141
AgsI TTSAA 2 cut(s) 219, 496
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 193, 306
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 8 cut(s) 131, 178, 255, 315, 341, 542, 592, 833
AluI AGCT 8 cut(s) 131, 178, 255, 315, 341, 542, 592, 833
Alw21I GWGCWC 2 cut(s) 257, 544
Alw26I GTCTC 1 cut(s) 762
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 833
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 4 cut(s) 334, 356, 446, 474
ApeKI GCWGC 3 cut(s) 371, 507, 833
ApoI RAATTY 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 614
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 2 cut(s) 45, 46
AsuHPI GGTGA 2 cut(s) 466, 619
AvaI CYCGRG 1 cut(s) 44
BaeI ACNNNNGTAYC 4 cut(s) 51, 51, 84, 84
BalI TGGCCA 1 cut(s) 336
BanII GRGCYC 3 cut(s) 121, 257, 544
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 2 cut(s) 257, 544
BbvI GCAGC 3 cut(s) 383, 519, 820
BccI CCATC 2 cut(s) 347, 530
BceAI ACGGC 4 cut(s) 84, 192, 343, 392
BciT130I CCWGG 2 cut(s) 195, 308
BciVI GTATCC 2 cut(s) 271, 818
BcnI CCSGG 2 cut(s) 45, 46
BcoDI GTCTC 1 cut(s) 762
BfuAI ACCTGC 2 cut(s) 17, 558
BfuI GTATCC 2 cut(s) 271, 818
BisI GCNGC 4 cut(s) 372, 449, 508, 834
BlsI GCNGC 4 cut(s) 373, 450, 509, 835
BmcAI AGTACT 2 cut(s) 380, 400
Bme1390I CCNGG 4 cut(s) 45, 46, 195, 308
BmeT110I CYCGRG 1 cut(s) 44
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 356
BmrFI CCNGG 4 cut(s) 45, 46, 195, 308
BmrI ACTGGG 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 45, 46
BsaAI YACGTR 3 cut(s) 63, 67, 111
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 6 cut(s) 44, 183, 208, 477, 603, 776
BsaWI WCCGGW 2 cut(s) 386, 810
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 200, 307
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 4 cut(s) 71, 119, 396, 758
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 2 cut(s) 195, 308
BseDI CCNNGG 6 cut(s) 44, 183, 208, 477, 603, 776
BseGI GGATG 3 cut(s) 355, 658, 762
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 50, 200, 307
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 4 cut(s) 71, 119, 396, 758
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 3 cut(s) 383, 519, 820
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 4 cut(s) 336, 358, 448, 476
BsiHKAI GWGCWC 2 cut(s) 257, 544
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 4 cut(s) 45, 387, 452, 811
BsiWI CGTACG 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 50, 200, 307
BsmAI GTCTC 1 cut(s) 762
BsmBI CGTCTC 1 cut(s) 762
BsnI GGCC 4 cut(s) 336, 358, 448, 476
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 121, 257, 544
Bsp143I GATC 3 cut(s) 53, 289, 458
BspACI CCGC 4 cut(s) 201, 449, 553, 836
BspANI GGCC 4 cut(s) 336, 358, 448, 476
BspCNI CTCAG 1 cut(s) 166
BspMI ACCTGC 2 cut(s) 17, 558
BspPI GGATC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 4 cut(s) 71, 119, 396, 758
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 6 cut(s) 44, 183, 208, 477, 603, 776
BssMI GATC 3 cut(s) 53, 289, 458
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 4 cut(s) 183, 477, 603, 776
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 195, 308
Bst4CI ACNGT 2 cut(s) 638, 706
Bst6I CTCTTC 2 cut(s) 245, 388
BstAPI GCANNNNNTGC 1 cut(s) 670
BstBAI YACGTR 3 cut(s) 63, 67, 111
BstC8I GCNNGC 3 cut(s) 121, 326, 803
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 3 cut(s) 355, 658, 762
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 3 cut(s) 56, 292, 461
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 3 cut(s) 53, 289, 458
BstMWI GCNNNNNNNGC 5 cut(s) 321, 413, 422, 539, 670
BstNI CCWGG 2 cut(s) 195, 308
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 4 cut(s) 43, 44, 193, 306
BstSNI TACGTA 2 cut(s) 63, 67
BstV1I GCAGC 3 cut(s) 383, 519, 820
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuI GTATCC 2 cut(s) 271, 818
BsuRI GGCC 4 cut(s) 336, 358, 448, 476
BtgI CCRYGG 1 cut(s) 208
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 355, 658, 762
BtsIMutI CAGTG 2 cut(s) 171, 711
BveI ACCTGC 2 cut(s) 17, 558
Cac8I GCNNGC 3 cut(s) 121, 326, 803
CaiI CAGNNNCTG 1 cut(s) 833
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 356
Cfr9I CCCGGG 1 cut(s) 44
CsiI ACCWGGT 1 cut(s) 193
Csp6I GTAC 8 cut(s) 64, 68, 102, 112, 379, 393, 399, 643
CviAII CATG 3 cut(s) 274, 646, 686
CviQI GTAC 8 cut(s) 64, 68, 102, 112, 379, 393, 399, 643
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 55, 291, 460
DpnII GATC 3 cut(s) 53, 289, 458
DraI TTTAAA 1 cut(s) 790
EaeI YGGCCR 2 cut(s) 334, 446
Eam1104I CTCTTC 2 cut(s) 245, 388
EarI CTCTTC 2 cut(s) 245, 388
EciI GGCGGA 1 cut(s) 216
Ecl136II GAGCTC 2 cut(s) 255, 542
Eco105I TACGTA 2 cut(s) 63, 67
Eco130I CCWWGG 4 cut(s) 183, 477, 603, 776
Eco147I AGGCCT 1 cut(s) 476
Eco24I GRGCYC 3 cut(s) 121, 257, 544
Eco53kI GAGCTC 2 cut(s) 255, 542
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 2 cut(s) 255, 542
EcoRII CCWGG 2 cut(s) 193, 306
EcoT14I CCWWGG 4 cut(s) 183, 477, 603, 776
EcoT38I GRGCYC 3 cut(s) 121, 257, 544
ErhI CCWWGG 4 cut(s) 183, 477, 603, 776
Esp3I CGTCTC 1 cut(s) 762
FaeI CATG 3 cut(s) 277, 649, 689
FatI CATG 3 cut(s) 273, 645, 685
FauNDI CATATG 1 cut(s) 733
Fnu4HI GCNGC 4 cut(s) 372, 449, 508, 834
FokI GGATG 3 cut(s) 362, 665, 769
FriOI GRGCYC 3 cut(s) 121, 257, 544
Fsp4HI GCNGC 4 cut(s) 372, 449, 508, 834
GlaI GCGC 1 cut(s) 42
GluI GCNGC 4 cut(s) 372, 449, 508, 834
HaeIII GGCC 4 cut(s) 336, 358, 448, 476
HapII CCGG 4 cut(s) 45, 387, 452, 811
HhaI GCGC 1 cut(s) 43
Hin1II CATG 3 cut(s) 277, 649, 689
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 482, 794
HpaII CCGG 4 cut(s) 45, 387, 452, 811
HphI GGTGA 2 cut(s) 466, 619
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 58, 239, 829, 842
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 358, 634
HpyCH4III ACNGT 2 cut(s) 638, 706
HpyCH4IV ACGT 7 cut(s) 62, 66, 110, 135, 141, 265, 771
HpyCH4V TGCA 4 cut(s) 26, 425, 689, 801
HpyF10VI GCNNNNNNNGC 5 cut(s) 321, 413, 422, 539, 670
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 7 cut(s) 62, 66, 110, 135, 141, 265, 771
Hsp92II CATG 3 cut(s) 277, 649, 689
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 53, 289, 458
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 3 cut(s) 539, 547, 589
Lsp1109I GCAGC 3 cut(s) 383, 519, 820
MabI ACCWGGT 1 cut(s) 193
MaeII ACGT 7 cut(s) 62, 66, 110, 135, 141, 265, 771
MaeIII GTNAC 1 cut(s) 581
MalI GATC 3 cut(s) 55, 291, 460
MboI GATC 3 cut(s) 53, 289, 458
MboII GAAGA 6 cut(s) 226, 262, 375, 499, 508, 749
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 3 cut(s) 121, 257, 544
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 4 cut(s) 160, 344, 612, 844
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 3 cut(s) 339, 580, 643
Mox20I TGGCCA 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 614
MscI TGGCCA 1 cut(s) 336
MseI TTAA 3 cut(s) 75, 596, 789
Msp20I TGGCCA 1 cut(s) 336
MspI CCGG 4 cut(s) 45, 387, 452, 811
MspR9I CCNGG 4 cut(s) 45, 46, 195, 308
MvaI CCWGG 2 cut(s) 195, 308
MwoI GCNNNNNNNGC 5 cut(s) 321, 413, 422, 539, 670
NciI CCSGG 2 cut(s) 45, 46
NdeI CATATG 1 cut(s) 733
NdeII GATC 3 cut(s) 53, 289, 458
NlaIII CATG 3 cut(s) 277, 649, 689
NspI RCATGY 1 cut(s) 689
PceI AGGCCT 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 794
Pfl23II CGTACG 1 cut(s) 63
PkrI GCNGC 4 cut(s) 373, 450, 509, 835
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Ppu21I YACGTR 3 cut(s) 63, 67, 111
Psp124BI GAGCTC 2 cut(s) 257, 544
Psp6I CCWGG 2 cut(s) 193, 306
PspGI CCWGG 2 cut(s) 193, 306
PspLI CGTACG 1 cut(s) 63
PspPI GGNCC 1 cut(s) 356
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PstNI CAGNNNCTG 1 cut(s) 833
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 8 cut(s) 65, 69, 103, 113, 380, 394, 400, 644
RsaNI GTAC 8 cut(s) 64, 68, 102, 112, 379, 393, 399, 643
SacI GAGCTC 2 cut(s) 257, 544
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 3 cut(s) 75, 596, 789
SatI GCNGC 4 cut(s) 372, 449, 508, 834
Sau3AI GATC 3 cut(s) 53, 289, 458
Sau96I GGNCC 1 cut(s) 356
ScaI AGTACT 2 cut(s) 380, 400
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 4 cut(s) 45, 46, 195, 308
SduI GDGCHC 3 cut(s) 121, 257, 544
SexAI ACCWGGT 1 cut(s) 193
SgrAI CRCCGGYG 1 cut(s) 451
SmaI CCCGGG 1 cut(s) 46
SnaBI TACGTA 2 cut(s) 63, 67
Sse9I AATT 4 cut(s) 160, 344, 612, 844
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 4 cut(s) 201, 449, 553, 836
SstI GAGCTC 2 cut(s) 257, 544
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 43, 44, 193, 306
StyI CCWWGG 4 cut(s) 183, 477, 603, 776
TaaI ACNGT 2 cut(s) 638, 706
TaiI ACGT 7 cut(s) 65, 69, 113, 138, 144, 268, 774
TaqI TCGA 4 cut(s) 257, 362, 461, 485
TasI AATT 4 cut(s) 160, 344, 612, 844
TatI WGTACW 3 cut(s) 378, 398, 642
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 1 cut(s) 794
Tru1I TTAA 3 cut(s) 75, 596, 789
Tru9I TTAA 3 cut(s) 75, 596, 789
TscAI CASTG 2 cut(s) 178, 711
TseI GCWGC 3 cut(s) 371, 507, 833
TspDTI ATGAA 6 cut(s) 173, 262, 263, 275, 750, 833
TspMI CCCGGG 1 cut(s) 44
TspRI CASTG 2 cut(s) 178, 711
XapI RAATTY 1 cut(s) 612
XceI RCATGY 1 cut(s) 689
XmaI CCCGGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 614
ZrmI AGTACT 2 cut(s) 380, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.